LOC110525475 (LOC106585430)


Basic Information

Item Value
gene id LOC110525475
gene name LOC106585430
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 21718415 ~ 21732524 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605607.2
GACGTCACGGCGGATCAACTTGGACAGGGAAGAAAACGCCACTACTGCGTAGTGCGCACAGGTGATTCAGTTGTCGGTGCCACCTTCTCGTGGTGGAAAACATGGGAAAACTCCAAGAATTCGACATAACTTTTAAAGACAATAAAGTTGTTTATAGTCCTGGAGAGTCACTTTCAGGCACTCTGAAAATCACAACCACCGAAGCTCTGCTATGTAAAGATATCAAAGTGAATTGCCAAGGCTTCTGTGGTGTCACCAGCAAGAGCAATGACACAGCCTGGATGGTGGAAGAGCAGTACTTCAGCAGCACGCTCTCTGTGGCAGATAAAGGAACCCTGAAACCGGGAGATCACAGTTTTCCGTTCAAGTTTCTCATTCCAGCCTCTGTTCCCACATCCTTTGAAGGAAACTATGGAAAAGTTATGTACAGAGTGAGGGCTTTCATTGACACTCCTCGCTTCTCTAAGGACTATAAGGTGGAGAAGCCTTTCTACCTGCTGAGTCTCCTCAACCTCAATGATGTACCTGACATCCATGGACGTAGTTCATCTTCCATTACTAAGAAGTTCACCTACCTGCTGGGGGTAAAGACAGGAACTGTGGTGCTGAAGGCCCATAGTGACATGAAGGGCTACACGCCTGGTCAGGTCATCCAACTGACCACAGAGCTCCACAACCAGTCTGGGAAAACCACAGGGACTGTGGTAGCCTGTCTCATTCAGAAAGTAACTTACCAGACAaagaagcctaccattgacttgAGGACTTTAGTGCAGGTGGAGGGTGCTGGGGTGAAGGCTGGCAAACAAGCTGAGTGGAAGGAGAAGATTATTGTACCTCCTCTGCCCCAGTCATCTCTGGCTGACTGTGGTCTAATAAACATGGAATACTTTATTCAAATCTCCTTGAAATCTCCAGAGGCTTCGTTTTTGTTGCCCATCCACATTGGAAACATCTCAGTGGATACCACGTCAGCACGACCCTCCAGACCCCCTCCTCCAACCACCGATCCTTCTCGCTCCTCCGCAAACCCTACCAAGCTAGAAAATAGCAGACGCTCTGAGCCGTCCTCCCAAGACAAAGAAACTCCTACTACCCCTTGCCCTTCCCCCCACCCAGCCCCAAAACCTGTTCCCAGAATCAGAGTCTCCActtcctcccctgcctcccccagtGCCCCTCCAGCTGAGATGGACTATCTGGTCATGGGCGCTAAGGGGCAGGTGACCGAGGCCCTCCCAACTGAGAGCCACTCCCAGCTTGGTTTCTTGAGTTCTCAGGCCACTGTCTCCCCCAGTGCCTTCAGCTATGCCCCAGGCCTCACCTTCTCCCAGAACCAGTCCCAGAGTGACGCCAAAAACCCAACGGGACCTTTGTTCTGTGTGTCCACAGGTGCCAccatcccattcttctctgaggGCAGTACCAACCCCAAGCCTACCCTCTACCCACTCCTGCCTCCTGAGTACAGCACCTCAACACTCCCACATGAGGCTCCTCCCAGCTATGTCGAGAGCTGTAGCAGCAACACATAAAACAACGTCATGACACAGGAGAGACTGCTGGCAACACTGAACATGACAACCAACCTCCCTTCTACTCGATCATGCTTCCAGATAGATCTCTTAAGTACGTCAGCCCAGGTTAAGCAACACCTTTTTTATGATTACTGATTGCTTTCACACATTGTTTGCGCTTTCAGGACAGTAATGTTTTTACATAAACAATTTTTATAGCTGGAGACACATTTTCAAAGTTAAGTCAGGGTAGAATTAGTTAAGAATATgttgaaattgtattttttttactaggcaagtcagttaagaacaaattcttatttacaatgacggcctaccccggccaaacccggacgaagctgggccaattgtgcgccgccctatgggactcccaatcacggccggttatgatacagtctagaatcgaaccagggtgtctagtgaggttctagcactgagatgcagtgctttagaccgctgtgccactcgggagccaaaacACCTATGATTGAAACAAGTGAAGATCCATGAAGCCCACTAGCAACTGCCCAGGCTATgttttatgtaacctgtatgtttatttattgttttcACTAAACTGTCTATTCATAGACAATTCACTATGTTCTATATCCAAATAATGTTTTATGCataggaaatacagtgccttgatACTCTACAATGCACAACCTAATAAAATTGTGTTGTATGTTTAGCCA

Function

NR:

description
arrestin domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605607.2 True 2236 mRNA 0.48 8 21718415 21732524

Neighbor

gene id symbol gene type direction distance location
ehmt1a LOC106585429 coding downstream 16666 21691111 ~ 21701749 (-)
cacna1ba LOC106585428 coding downstream 29274 21499304 ~ 21689141 (-)
si:dkey-61l1.4 LOC106585426 coding downstream 224492 21464228 ~ 21493923 (-)
man1b1b LOC106585427 coding downstream 254448 21455398 ~ 21463967 (-)
inpp5e LOC106585421 coding downstream 379188 21332767 ~ 21339227 (-)
p2ry2 p2ry2 coding upstream 3165 21735689 ~ 21737605 (-)
LOC110525477 LOC106585431 coding upstream 5844 21738368 ~ 21740331 (-)
LOC110525478 LOC106585434 coding upstream 12952 21745476 ~ 21764123 (-)
LOC110525119 LOC106585327 coding upstream 43077 21775601 ~ 21779162 (-)
tubb2b tubb2b coding upstream 159546 21892070 ~ 21894808 (-)
G484929 NA non-coding downstream 171970 21518135 ~ 21546445 (-)
G484888 NA non-coding downstream 177996 21421212 ~ 21540419 (-)
G484904 NA non-coding downstream 264276 21451333 ~ 21454139 (-)
G484863 NA non-coding downstream 331238 21386796 ~ 21387177 (-)
G484862 NA non-coding downstream 333954 21384189 ~ 21384461 (-)
G485307 NA non-coding upstream 75897 21808421 ~ 21808697 (-)
G485275 NA non-coding upstream 95076 21827600 ~ 21828319 (-)
G485278 NA non-coding upstream 96153 21828677 ~ 21829752 (-)
G485351 NA non-coding upstream 150882 21883406 ~ 21883617 (-)
G484895 LOC106585423 other downstream 283696 21431930 ~ 21434719 (-)
G484807 LOC106585304 other downstream 420242 21296580 ~ 21298173 (-)
LOC110525458 LOC106585411 other downstream 597348 21115008 ~ 21121728 (-)
G484409 NA other downstream 709333 21007016 ~ 21009082 (-)
G484232 NA other downstream 1109679 20588262 ~ 20608736 (-)
G485279 NA other upstream 101024 21833548 ~ 21834360 (-)
G485864 NA other upstream 528110 22260634 ~ 22263353 (-)
G485877 NA other upstream 548202 22280726 ~ 22281026 (-)
G486716 NA other upstream 1105129 22837653 ~ 22840566 (-)
G486953 NA other upstream 1518762 23251286 ~ 23258106 (-)

Expression


Co-expression Network