LOC110525119 (LOC106585327)


Basic Information

Item Value
gene id LOC110525119
gene name LOC106585327
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 21775601 ~ 21779162 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110525119
ATGTCTACCTACTCAGGGGGAGGGATATCTAGCTATGCAGGGGAACGAAGGGGTGCAGGGAGCAGTCTGGAACCCGGTCTGGAATAGGCTTTGCAGAACATCCCCAAATCCAGACACCGCCTCACTCCTGTGTATCTGGGAGCCACAGCCGGTATGAGGCTACTGAAtATATCCAACCCCACAGAGTCAGAGCAGATACTGAAGGATGTAGGCAGCAAATTGCGTACTTATCCTTTTGACAGAGGGGAGACCATCTTGAGTGGACAGGAGGAGGGGGCATATGGCTGGGTCACTGTCAACTACCTGTTAGACAACTTTATCAAGGTGAAGTTTTCACAGGTATGGCTTTCTCCTGGCAGAGATACAGTGAGTGCTCTGGACTTCGGAGGCGCCTCCGCTCAGATTACCTTTGAGACCACAGACGTGGTGGAGGATAAGACGTCTTGGATCTACGTCTTTATGGTCGAGACGATCACCCCTACACACAGAGCTTCCTGTGCTACGGCAGGGACCAGGTCTTATGCAGACTGCTGGCTCACTTGGTCAAGACTCAAGGTGCTGGTCCCCATATATCACACCCCTACTATCCAGCAGGTTTCATTGTCTCCATGAAGCTGGACAAGGTGTTTGACTCCACATGCACGGCAGACCAAAGGCCCTCTCCCTACAGCCCCCAAGTCTCCCTGACAGTCACGGGCACTGGGAATTACCAGCGGTGCCTTGGCAATATGTCCAAGCTCTTCTTTCTCCAAGTGCTCCTTTGATGGAGCAGCTTCATGGCTTGTTCACTGTAAGCCAAAGCATGCCTTCTCTGCTCACGTGTTCCTGAAGCGCACAACTGGCATCACTGTCACGTCTCCCATTATAGTGGAGGGAGCCGTCCGCACTGTCTGCAACATGAGCTTCCAGGAGTCATccgtgacagaatcccgcaccttcCATGGAATCAACAGGAGCAGCCAcacctcctctcccatcgatggaggagaggGTTCTCCATcacaccaccattcttcacctgATTGGGTCAGCTATGGATCAGAtgatggaccgatgggagaggagtggccttCGGGTGGGTGTCAGGGGTTTCTCCTACAACTGGAGTTGTACCTAGCTAACGTCCGTCCGACTCCCTCAGGGGAGGAGAGCGTGagcgtcctcgtctcctgtcCGACGGGgcgagccctggagtgggccaacgcagtgtggaatggcccagactcggcGAGGGATTGCTACCCCGAGTTCACCCGCTGA
>TU551558
CATGAAGCTGGACAAGGTGTTTGACTCCACATGCACGGCAGACCAAAGGCCCTCTCCCTACAGCCCCCAAGTCTCCCTGACAGTCACGGGCACTGGGAATTACCAGCGGTGCCTTGGCAATATGTCCAAGCTCTTCTTTCTCCAAGTGCTCCTTTGATGGAGCAGCTTCATGGCCTTCTCTGCTCACGTGTTCCTGAAGCGCACAACTGGCATCACTGTCACGTCTCCCATTATAGTGGAGGGAGCCGTCCGCACTGTCTGCAACATGAGCTTCCAGGAGGTAATGCACTGAACTGCTGGGCTCGGctgagatgtttaatatgagtctggaaggagagtttacagtctaaccagacacctaggtatttgtagttgtccacatattctaagtcagaaccatccagagtagtgatgctggacgggcgggcaggtgcaggcagcgattggttgaagagcatgcatttagttttactagcgtttatgagcagttggaggccacggaagaagtgttgtatggcattgaagctcgtttggaggtttgttaacacagtgtccaaagaagggccagatgtatacagaatggtgtcgtctgtgtagagttggatcagggaatcacccgcagcaagagcaacatcgttgatatatacagagaaaagagtcggcccgagaattgaaccctgtggcacccccatagagactgccagaggtccggacaacaggccc

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110525119 False 1260 mRNA 0.51 7 21775601 21779162
TU551558 True 723 lncRNA 0.51 2 21776944 21778023

Neighbor

gene id symbol gene type direction distance location
LOC110525478 LOC106585434 coding downstream 11478 21745476 ~ 21764123 (-)
LOC110525477 LOC106585431 coding downstream 35270 21738368 ~ 21740331 (-)
p2ry2 p2ry2 coding downstream 37996 21735689 ~ 21737605 (-)
LOC110525475 LOC106585430 coding downstream 43077 21718415 ~ 21732524 (-)
ehmt1a LOC106585429 coding downstream 73852 21691111 ~ 21701749 (-)
tubb2b tubb2b coding upstream 112908 21892070 ~ 21894808 (-)
nr5a1a LOC106585443 coding upstream 436653 22215815 ~ 22231402 (-)
nr6a1a LOC106585444 coding upstream 485461 22264623 ~ 22378999 (-)
LOC110525492 rpl35 coding upstream 659724 22438886 ~ 22441136 (-)
LOC110525493 LOC106585445 coding upstream 662082 22441244 ~ 22457748 (-)
G484929 NA non-coding downstream 229156 21518135 ~ 21546445 (-)
G484888 NA non-coding downstream 235182 21421212 ~ 21540419 (-)
G484904 NA non-coding downstream 321462 21451333 ~ 21454139 (-)
G484863 NA non-coding downstream 388424 21386796 ~ 21387177 (-)
G484862 NA non-coding downstream 391140 21384189 ~ 21384461 (-)
G485307 NA non-coding upstream 29259 21808421 ~ 21808697 (-)
G485275 NA non-coding upstream 48438 21827600 ~ 21828319 (-)
G485278 NA non-coding upstream 49515 21828677 ~ 21829752 (-)
G485351 NA non-coding upstream 104244 21883406 ~ 21883617 (-)
G485358 NA non-coding upstream 116490 21895652 ~ 21895870 (-)
G484895 LOC106585423 other downstream 340882 21431930 ~ 21434719 (-)
G484807 LOC106585304 other downstream 477428 21296580 ~ 21298173 (-)
LOC110525458 LOC106585411 other downstream 654534 21115008 ~ 21121728 (-)
G484409 NA other downstream 766519 21007016 ~ 21009082 (-)
G484232 NA other downstream 1166865 20588262 ~ 20608736 (-)
G485279 NA other upstream 54386 21833548 ~ 21834360 (-)
G485864 NA other upstream 481472 22260634 ~ 22263353 (-)
G485877 NA other upstream 501564 22280726 ~ 22281026 (-)
G486716 NA other upstream 1058491 22837653 ~ 22840566 (-)
G486953 NA other upstream 1472124 23251286 ~ 23258106 (-)

Expression


Co-expression Network