nr5a1a (LOC106585443)


Basic Information

Item Value
gene id nr5a1a
gene name LOC106585443
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22215815 ~ 22231402 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605623.2
AGAGAACGCTGGAAATGACTGCAGTTATTCGTGGAGATCACCATTATCCTGAattatttgtttattaggctacgaATTTGTATTGCAGATTCGGATTGTATGTGACATACAAAGTGGTCAAAGTTTTGCAGCATCTTCTTTAATAGGTTTTATTGTCGTCGACGTCTAGCCTGCCTTATAGGTAATACCATGTTAGGAGAAAAGGCACAAGGCGTTCCATTGATGGTAGGCGTAATGGACTACAACTATGATGAAGATTTGGAAGAATTGTGTCCTGTTTGTGGAGATAAGGTCTCAGGATACCACTATGGACTCCTTACATGTGAAAGTTGTAAGGGCTTCTTCAAGAGGACAGTCCAAAACAAGAAGAGGTATACTTGTGCAGAAAACCAGGAGTGTAAAATAGACAAAACACAGCGGAAGAGATGTCCCTGCTGCCGATTCCAGAAATGCCTCGATGTTGGCATGAGATTAGAAGCTGTGCGTGCAGACCGCATGCGTGGGGGCAGGAATAAGTTTGGCCCCATGTACAAGCGGGACAGAGCCATGAAGCAGCAGAAGAAGGCTTTGATACGTTCCACGGGCTTCAAGCTGGAGTCTGCTCCTCCACAGCTCTCCCCTGTACAGACTAACTATGGCTTCACTGGAACCCTGCACAGCCTCCCATCCCTCCCCAAAGGCCTCATGCCCTCCATCCCAGCCTCCATCACCCCCACAGACTATGAGGCCAGCCTCTACGGACCCTCCTCCCTGGGGGTGGCCATGCAGCCCCATGGACCCCTGCCTACCCAGTACCTGTGCACAGCATTCCCCAGCAGGGCCATCAAGTCTGAGTACTCTGACCACCACACAAGCtccccagagtctctggtggggTACCCCTTTCCGGATGTGTACCCCTCCGGAGGCTCCCCACagcctccccccctctcccccctggtGCTAGAGCTGCTGCGCTGCGACCCAGACGAGATGCAGGTGCAGAGTAAGATCATGGCCTTCCTGCAGCAGGAGCAGAGTGGCCGGGGCCGGCAGGACAGGCTCAGCACCTTCAGCCTCATGTGTCGCATGGCTGACCAGACTCTGTTCTCCATAGTGGAGTGGGCCAGGAGCTGCATCTTCTTCAAGGAGCTCAAGGTGGGGGACCAGATGAAGCTTCTTCACAACTGCTGGTCTGAGCTGCTGGTCCTGGACCATGTCTTCAGACAAGTGCAGCACGGGAAGGAGAGCAGCCtgctgctggttactggccagGAGaTGGATCTGTCATCCGTGGGGTCACAGGCTGGCTTGAGTCTGTCAGGCCTGGTCCAGAGAGGACAGGAGCTGGCTGGGAGGCTACTAGCCCTGCAggtggacaggagagaggttGCCTGCCTcaagttcctcctcctcttcaatcCCAATGTGAAGCTGTTGGAGAACCAGGTGTTTGTGGAGAGTGTTCAGGAGCAGGTGAATGGGGCTCTGCTGGAGTACACTGTGTGCACCTACCCCCTGTATCTGGACAAGTTCAGCCAGCTGGTGCTGCATCTGCCAGAGCTGCGAGCCCTCAGCACCCAGGCAGAGGACTACCTGTGCTACAAACACCTGAGTGGGGAGGTGCCCTGCAACAACCTGCTCATTGAGATGCTGCATGCCAAGAAGGCCTGTATATGAGCACCACGCTACCATCACTGTACACCAGCAGACTGTCTGTGGGACCGATGGTGTGGAAGCAAAGAGGGGATTTATGATTACAGCTAGGAGAAGAtgagttgtgtgtttgtgtgtgtgcgtccgtgcatGCGTGAGTATCCCCTCTGTCCAAGGTGTGTGTAAACAGAATATTGACTCATTGTTTTGGCAGTCCTTCTATTGTACATAGTTATAAAATGTACAAAGAAAGCTATGCtatgatactgtatgtagtaaatGTAACATTTTGTTGAATTCAGCAGAGTGAGGTCTTATGTCAACGTTATATCAGAGTTATAGGGCCACTTTCAGATGAAAGAGGCCCTATAACACGTCATTAAGACATGTCTTAGCCTTTCAAATATAGTGGAAGCACTACATTTATTTTAGCACTTGTTCCTTTGTACATTGTCACCAACTTTACCAAAAAATGTGGTATGTGAAAAATATGTTATGTTCAATATAGTTTTTTTCTATTAGATATTGATATTCTAATATATGAACTACACATATGTTTCAAGAATTAAATCTGCATACTCA

Function

NR:

description
steroidogenic factor 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08705 NR5A3, ftz-f1; nuclear receptor subfamily 5 group A member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605623.2 True 2217 mRNA 0.50 7 22215815 22231402

Neighbor

gene id symbol gene type direction distance location
tubb2b tubb2b coding downstream 321007 21892070 ~ 21894808 (-)
LOC110525119 LOC106585327 coding downstream 436653 21775601 ~ 21779162 (-)
LOC110525478 LOC106585434 coding downstream 451692 21745476 ~ 21764123 (-)
LOC110525477 LOC106585431 coding downstream 475484 21738368 ~ 21740331 (-)
p2ry2 p2ry2 coding downstream 478210 21735689 ~ 21737605 (-)
nr6a1a LOC106585444 coding upstream 33221 22264623 ~ 22378999 (-)
LOC110525492 rpl35 coding upstream 207484 22438886 ~ 22441136 (-)
LOC110525493 LOC106585445 coding upstream 209842 22441244 ~ 22457748 (-)
LOC110525495 LOC102784428 coding upstream 229367 22460769 ~ 22464361 (-)
LOC110525498 shlb2 coding upstream 318812 22550214 ~ 22572561 (-)
G485651 NA non-coding downstream 20927 22194582 ~ 22194888 (-)
G485645 LOC106584485 non-coding downstream 28088 22187420 ~ 22187727 (-)
G485643 NA non-coding downstream 30750 22184833 ~ 22185065 (-)
G485628 NA non-coding downstream 49726 22165773 ~ 22166089 (-)
G485587 NA non-coding downstream 58197 22157374 ~ 22157618 (-)
G485690 NA non-coding upstream 9797 22241199 ~ 22241401 (-)
G485700 NA non-coding upstream 17002 22248404 ~ 22248725 (-)
G485868 NA non-coding upstream 32038 22263440 ~ 22263661 (-)
G485875 NA non-coding upstream 46974 22278376 ~ 22278642 (-)
G485279 NA other downstream 381455 21833548 ~ 21834360 (-)
G484895 LOC106585423 other downstream 781096 21431930 ~ 21434719 (-)
G484807 LOC106585304 other downstream 917642 21296580 ~ 21298173 (-)
LOC110525458 LOC106585411 other downstream 1094748 21115008 ~ 21121728 (-)
G484409 NA other downstream 1206733 21007016 ~ 21009082 (-)
G485864 NA other upstream 29232 22260634 ~ 22263353 (-)
G485877 NA other upstream 49324 22280726 ~ 22281026 (-)
G486716 NA other upstream 606251 22837653 ~ 22840566 (-)
G486953 NA other upstream 1019884 23251286 ~ 23258106 (-)
G487022 bicdl1 other upstream 1154132 23385534 ~ 23385907 (-)

Expression


Co-expression Network