nr6a1a (LOC106585444)


Basic Information

Item Value
gene id nr6a1a
gene name LOC106585444
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22264623 ~ 22378999 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605625.2
CAAATCTTATTGCCTACTCATTGCCAACTCAGCGGAATGATGCAGAACCACCAACTACAAACACGACGACCAAACCCTACATAACCCAGAATGCATACTGCAGCGCGTACGTCATTGCTTAATGTTCAGGGTAAATGATTTGTGTAGGTATGGGGGTGTGGAAGAACTGTTATTCTTACTGACAACTGCAGGCTTGGGGCTACAGTCTGTCCAGTGAAGACAGTAGCCTCTCAACACAACGAAGACAGCTAATTGCATTATCGAATTGAAAATATTGCTAATAGGCGCCCGGCTGATAGAACGGCGCGCATGCAGCTTTCATGAAGGAGGATGGAGATAGACGACAGGACGAATGGGTTCGATTACCCAGAGAGAAACAATACGAAGTCCGTTAACGGCTTCTATGGTGACCATCCCTTGGAAGTTGAACAGAATGATGTCGTAGATGAAATGAATGGCAGTAATCTTGATGATGCAGCTGACCCACGTGTTTGCCTCATCTGTGGAGACCGCGCCACAGGCCTGCACTATGGCATCATCTCCTGCGAGGGCTGCAAGGGCTTCTTCAAGCGTAGCATCTGCAACAAGCGCGTGTACCGATGCAGCCGAGACAAAAACTGCGAAATGTCGCGCAAGCAACGCAACCGCTGCCAATACTGCCGTCTGCTCAAGTGTCTACAGATGGGAATGAACCGCAAAGCAATCAGGGAAGATGGGATGCCAGGAGGGAGAAACAAAAGTATCGGGCCTGTCCAGatcACAGATGAAGAGATTGAGCGGATCATGTCGGGACAGGAGTTCAAGGAGGAAGCCAGTCTGCCGGAGCACACCTGGAGCAACAACGGTGACAGTAGTGACCACAGTTCTCCTAGCAACGGCGCCTCCGAGGGCAACCAGCCATCACCTGCTTCCACTCTATCATCCAATCGTTCTTTAGAGATGGGTGGTGGCTACACGGGTGCTGTCAGGGACCAGTACATCAACGCCCCCATGAACACCCCCTACCAGCTGCTACCTCACCTCTTTAGCTACGCTGCCCAGTCAGGCCTGTTGGCCCCCCAGCCCCGCAGCCTCTACCCCCAGTCACACCCCCTGGTGATGCAGCTTGTGGCTGCAGAGGACCTAACTCCACTGGCCACCCCCATGCTGATAGAGGACGGGTATAAGGTGACTCAGGTGGAGTTGTTTGCGCTGCTGTGTCGCCTGGCCGACGAGCTGCTGTTTCGTCAGATCTCGTGGATCAAGAAGCTGCCGTTCTTCTGTGAGCTGTCTATTGAGGACTACACCTGTTTACTCAGCTCCACCTGGCAGGAGCTGATCCTGCTGTCCTGCCTCACCATCTACAGTGCACAGATCTTTGGAGACCTGGCCGACGTCACCGCCAAGTACACTCCCTCTGATGAGGAGCTGCAGGGGTTCAGTGAGGATAGCATGGAGTTGATGGAGAGGCTGATCTATCTGTTCCGCAAGTTCCACCAGTTGAAGGTCAGCAACGAGGAGTACGCCTGCATGAAAGCCATCAACTTCTTGaaccaagATATCCGCGGTCTGACTAACGTCTCCCAGTTGGAGCAACTGAACAAGCGCTACTGGTACGTGTGTCAGGACTACACCGAGTACAAGTACCCTCACCAGCCCAAACGCTTCCCTGAGATCATGATGTGTCTGCCAGAGATCCGTTTCATGGCAGGGAAGCTGGTGAACGTTCCTCTGGAACAGCTCCCCCTCTTGTTTAAAGCAGTTTTGCACTCCTGCAAATCCAGCTTCATCAGCAACAGGACAGGAAATTCTCCCTGTATGACTACTACTGGTACCTCCCCCGGGAACTGAGCCCCGCACCCTGGCCCCAGGACCGCCCTTTGACAAGAATCTTGCCTGGGGTGGGGCCAGGGACTGGTCCCCCTTCCTGTGAATGTGACAAGCAATTTTTGTtctctatatatttattacaCGACAGAGCTGAATGTATGCTGATTTACGCTGTGCACATGCTTCTGTACAAACTAAATGCACATAGATGCATTGGTCTTTGGAGTTTACAAATATGTATCCGATTGCTCAACGTGTCAGTGTTGCCATTGTTAGAACTAGATTTTTAAGATTTATTTGATTCGGAATGGGGACGGGTATAAATGAGTTGACAAGTGTTTTGAGACTACCTCAGGAAGATGATGTTGCTATTTTCAGGTACCTTTTTCTCGCTGTTTTGAAATGAAGAGGTTGCCCGGTCTAAATCAAATCCCTGTAAATGCTGTAAACTCCTGAATCATAGATGATAAGTCGGCCTTTACAATGACATTGACCAAAGGCATTGCTGCATATTCATTTGAACCAAAGATAGAAAAGCATTCAACCCTGCAATCAACAAATGAATGTCCTGAATTTCCCACTAGTTCTGGTGTATTTTCTCACTTCTTGTAGTATTTTTGTACACTATTTCATACAATCCACAAACAGACATCCTGTAGGGATGGCCTGGTCAATGTAACATTCCTTGTCTTTCAGTGAGGTGAAATTTTGTTGGATTGTGGGATCTTCATAGAAAACAAGCATACGGGTATTTTCTACAATCATAGACTGCAGAGCAAATTTAGTTGCATAGTTGCAGGGGTAGGGGAAATTTGTTATTAGCTTGAATGAGAATTGTTTTTGACCAAAGTGATATGCAAAGTTTTTTAAGCAGCACCCATAGATTAGTGATTAGTCGATAGCTCAGTGTAATGATTTCTTATCAATGAAGGACCAGGATAAGAAATGAATCAATCTGTTTAAGAGCCAGAGGGGAgaccctcagacagacagtgtagctCGTTCTTATCCTAACCCCTAGGCTGAGACACCACAAACAAGGGctccactctcttctctcctaGTCCCTGCTCCTCCAGACATACAACCCATCTTGGCTTTCCACTGGTACTTCCTTGCCCAAACCTGAGCCTCTGCACATGCTCACTGGGTTGGTGGTCCGATCTGCACAGTTAGGCTACAAGGAAATGCTGGCTTGTTCATTTGTACTACTACATTTGTAGACAGTGTTGGGTTTAGAATGCTCAGGTGACTATATTTTGACTGcaacagaggagagatggaggagacattAGAGGCATGTCTATTAATCTGGTCTGTGTTGACAGACTAGAGGTTACTTCTGGCTTGCACACATTGTTTAAAAAAGCTATATAAAGAAATAGGTTCTTTATTTATGAAGTATGAGATGATCATTTCAACCAGCCGTTAGCCGTTTCATAACAACCATTGTTTAAAATGTGGAGCAATGCAGTCCTTGCAACGACTCTTTTCTGCATGCCGTGGTGAGGCAGGAGACATTCTTTGACCATTACCGTGGCAAAGTGCCCACCCcgcattctcctctctctcaggtccttgtggACCGGAATTGAAACAGGGTAAAGTGAGTGTTATGTATTGCATTCATGAGTTACTCAGTGATCACTATGCTGATGTacttgtaggatttttaattgtAGAATTCTGGACATTGTAGGTCCTTTTAGAAAGTGtttcatatttcatttttttctgttCTGTGAAAGTGGCTGTTGTTTACGGGCATGTTTTAGCTTATTTGTCTGAAGATGGTCGGAGACAGGACTTAACATCAGTAAGGTCAGAGAGGTCCCTTTTCCACTCTGAGCCTAACCAAGCTAACCTCAAATCAACAGGTGGGCTTACGATTGCTGCCTCCATCACTGGGTCTAGACTAGCCTGTCTATATCTTCTTAGCCTTAACACGGTACTACACTGTACCGTCTAATGTCCTGAACCACGCTTTGAATACTTTCACCAATACAGTGTTCTTTGTTTCAGTAGTTTCAATTAGCCACCTTTCCATGTTTTGTTGTCATACATTtcatgtattttgtttttttggaGTGAAAAAGACCCctatcatttgttttatttttaatgatTTCGGATGGATGTTGGATGTGATTCTATCAACGTGATGCCACAGTTCCAAAGGAAATAATGTTTATGGTATTGATGTTACAATTCTAAAGTGTTTACAAACTATTACCAAAAACACTGATTTGATGAATAGAATGATATATGCAGAGAGTGAATTAACCAATGGCAGGCCCCTGTGAAACCggtaaatatacagtgcattcggaaagtattcagacatcttgactttttcaaaatgttgttactttacagccttattctaaaatggattcaattgtttttttactcatcaaactacacacaataccccat
>TU552189
GTCCCTTTTCCACTCTGAGCCTAACCAAGCTAACCTCAAATCAACAGGTGGGCTTACGATTGCTGCCTCCATCACTGGGTCTAGACTAGCCTGTCTATATCTTCTTAGCCTTAACACGGTACTACACTGTACCGTCTAATGTCCTGAACCACGCTTTGAATACTTTCACCAATACAGTGTTCTTTGTTTCAGTAGTTTCAATTAGCCACCTTTCCATGTTTTGTTGTCATACATTtcatgtattttgtttttttggaGTGAAAAAGACCCctatcatttgttttatttttaatgatTTCGGATGGATGTTGGATGTGATTCTATCAACGTGATGCCACAGTTCCAGTGTTTACAAACTATTACCAAAAACACTGATTTGATGAATAGAATGATATATGCAGAGAGTGAATTAACCAATGGCAGGCCCCTGTGAAACCggtaaatatacagtgcattcggaaag

Function

NR:

description
PREDICTED: nuclear receptor subfamily 6 group A member 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605625.2 False 4245 mRNA 0.46 11 22264623 22378999
TU552189 True 463 lncRNA 0.39 2 22264726 22265228

Neighbor

gene id symbol gene type direction distance location
nr5a1a LOC106585443 coding downstream 33221 22215815 ~ 22231402 (-)
tubb2b tubb2b coding downstream 369815 21892070 ~ 21894808 (-)
LOC110525119 LOC106585327 coding downstream 485461 21775601 ~ 21779162 (-)
LOC110525478 LOC106585434 coding downstream 500500 21745476 ~ 21764123 (-)
LOC110525477 LOC106585431 coding downstream 524292 21738368 ~ 21740331 (-)
LOC110525492 rpl35 coding upstream 59887 22438886 ~ 22441136 (-)
LOC110525493 LOC106585445 coding upstream 62245 22441244 ~ 22457748 (-)
LOC110525495 LOC102784428 coding upstream 81770 22460769 ~ 22464361 (-)
LOC110525498 shlb2 coding upstream 171215 22550214 ~ 22572561 (-)
LOC110525497 LOC106585448 coding upstream 193787 22572786 ~ 22579398 (-)
G485868 NA non-coding downstream 962 22263440 ~ 22263661 (-)
G485700 NA non-coding downstream 15898 22248404 ~ 22248725 (-)
G485690 NA non-coding downstream 23222 22241199 ~ 22241401 (-)
G485651 NA non-coding downstream 69735 22194582 ~ 22194888 (-)
G485645 LOC106584485 non-coding downstream 76896 22187420 ~ 22187727 (-)
G485959 NA non-coding upstream 27936 22406935 ~ 22407266 (-)
G485969 NA non-coding upstream 45227 22424226 ~ 22427128 (-)
G486024 NA non-coding upstream 135438 22514437 ~ 22514684 (-)
G486037 NA non-coding upstream 149486 22528485 ~ 22529833 (-)
G486573 NA non-coding upstream 161603 22540602 ~ 22540811 (-)
G485864 NA other downstream 1270 22260634 ~ 22263353 (-)
G485279 NA other downstream 430263 21833548 ~ 21834360 (-)
G484895 LOC106585423 other downstream 829904 21431930 ~ 21434719 (-)
G484807 LOC106585304 other downstream 966450 21296580 ~ 21298173 (-)
LOC110525458 LOC106585411 other downstream 1143556 21115008 ~ 21121728 (-)
G486716 NA other upstream 458654 22837653 ~ 22840566 (-)
G486953 NA other upstream 872287 23251286 ~ 23258106 (-)
G487022 bicdl1 other upstream 1006535 23385534 ~ 23385907 (-)
G487016 NA other upstream 1011018 23390017 ~ 23392062 (-)
LOC110525180 hps4 other upstream 1204037 23582127 ~ 23587892 (-)
G485875 NA non-coding upstream 13148 22278376 ~ 22278642 (-)
G485878 NA non-coding upstream 16442 22281670 ~ 22281894 (-)
G485883 NA non-coding upstream 24352 22289580 ~ 22289871 (-)
G485904 NA non-coding upstream 59533 22324761 ~ 22325139 (-)
G485905 NA non-coding upstream 60296 22325524 ~ 22325750 (-)
G485877 NA other upstream 15498 22280726 ~ 22281026 (-)

Expression


Co-expression Network