LOC110525506 (LOC106585454)


Basic Information

Item Value
gene id LOC110525506
gene name LOC106585454
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22642795 ~ 22646088 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473764.2
TTTTCCAGTTAATGTGGGAGGTTTTCGAACGAACCAAATTTGAGATGTCTATAAATATATGAATCGGCTGTAAGGAACCGCCATTTCCGACTACTCTCGTGTTTCTTCCGAACTCGCTCGTTCCTGATTTGCATCTAGGTGTAAAATATATTTGCACACATACAATAATGATACACAAGTATAAATACGCGATTCGAGTTGCTACATTGTTGCCAACAATGGCGGTCAGAGTGAGACAGCTGTGGGGAATTCGGCTACAAACGCTTATGTTTTTCATTGCATTTCTGTGCGACTTTAAACTCGTTGAATCCTGTGTTGGCGACGAAGTCGGTGACTTGTTACTCTGCAGGTCCTGTGGACATGAATTGGCTTTTGAGAAAGATGCCAACTTTATCCACAGTCGACTTGCGCTCTCTTATAGAAATGATACGGTTGTTGGAGAAAGAAGAGTGCCCGTCCAGCGGTTCGAAAACCCACAGGGCTACCAGTTTGAAGTCATGACTTTCAGAAAGGCAGACGTTGTCAAGCACTGGCCTGCGGACAAACATTTCACCTGGTATCCTGGATATGCCTGGACAGTGGCTACATGTCCGCGATGTAACGCACACCTTGGTTGGGCTTTTCAACCCATTGAATGGCCAAAGACTTTAACCAAAGGGGAATTTGAGGAATCGGAGGAGACATTTGTGGCCTTGGTCACTAATCGATTGTTACAAGAAAAATTTGCATCAACACTACTGACTCCGAAATCATTCAGAAGTTGACATCTGCTGCATTCAAAGCTACAAATTATACCTGGCTGTAAAAACTATACTTTTTTTGCATTTCATAATAAATAAATAGCAATACAGCATGTGGTATTTCCTGTGATTGTAATACACAAAGTAAGCACTTGAGATCGATACTGTTACTGACAGTTTAACATAACAGTCCAAAACTGCAAGCATACCACAATTCTAGATATAACAGCCAGACAGACATTTATCATGTCATGTAGCTTCTGGCTCTAGATAACTAATTGAACTACAGTTGGTTAGATGAAACATTCGTGTACACATTAAGTTTTATTGTAACAAAGAAACTTGTACACTaagtttaaaacatttttttccccagcagaaaataaaatggtgattagATGCAAATTCCATGAGATAACAAGGTCATTTTCCATGAAGCAGTGGGGGCCCAAATTtacaagcattttttttttttttactttttgttTGGTTTATTAAAAATGTAATTTCAAATCTCACGGATGTCTgtaaaacaatacaaatgaaaatccaaaaaaataataataataatggcctCAAAATTCCCACCCTCCCCAACACCCTAAGATGTCTCTGCCCTACCCCAGCATAGACCACAAACATTGCAAGAACTGATAGGAATGAGCTAGTACTTTATCTGTTGACTTAACCACATTTTTTTTAGGGATCTACTCCCaactgaacaaaagtataaaaACTGGAGGGGTCCACTAGTGCCAAGTCAACGCACCATGGCTTTTGTTAATTTAAATCGCACAACCGTTAACAGGAAGAACAATTTATAGAAATTGCCATTCATTTAACTACAAGATGGCATGCTTATTCTAGTAGTTCCCCCCCCTAGATGAATGTGGGAATTATTGTGGTTTGACAATTCAAAGGCAAGAATTTGACATTGTTTTAGAGGAGACAAAAATGAAACATGGCACAGACAGGAGAGGCTTCAGAATGAGGAAATGAAGCACAAAATAAAAGTAAGAAAATATGGGTGGATAaccaaatgggggggggggg
>TU552991
TCTGCCCTACCCCAGCATAGACCACAAACATTGCAAGAACTGATAGGAATGAGCTAGTACTTTATCTGTTGACTTAACCACATTTTTTTTAGGGATCTACTCCCaactgaacaaaagtataaaaACTGGAGGGGTCCACTAGTGCCAAGTCAACGCACCATGGCTTTTGTTAATTTAAATCGCACAACCGTTAACAGGAAGAACAATTTATAGAAATTGCCATTCATTTAACTACAAGATGGCATGCTTATTCTAGTAGTTCCCCCCCCTAGATGAATGTGGGAATTATTGTGGTTTGACAATTCAAAGGCAAGAATTTGACATTGTTTTAGAGGAGACAAAAATGAAACATGGCACAGACAGGAGAGGCTTCAGAATGAGGAAATGAAGCACAAAATAAAAGTAAGAAAATATGGGTGGATAaccaaatgggggggggggggggggggggtagcaaaGGGTATTGGTAGATTATTTAACTTTCCGGTTTAATCATCTTCTCCATCATCCTAAACAAAAGGAAAGAAAAATCAATACTGTGCAAACAAATTTAGCTATTGAATATAGTGAATTGAGCGAATTAATATTTAGGGCATACCTCCCCATCATCtccatcatcctcctcttcatcttcctcccCATCATCTTCATCACCCTCCTCATCAATGTCCTCAAGGCCTtcctcatcgtcatcatcatcttcaCCTTCACCCTCCTCATCATCCATGTCAGGAACCAGGTAGTACTGCAGGGGGTTTGGCCAGATGTCATCCTTGATAACCTCTCCCAGCTCATCTGCCCCAGCATCTGAGTGATCAGTGAACCAGGTGAAGAAGCTCTCTGGCTCTTCATGTTGCCTCTTCTTGCCGGCTTTGTTCTGTGTCTGGCTGGAGCGCTTTGTCAGGTCCTTTCCCGATTTCCATTTGATTTCTGTCGACTTTGAGGATGGGTCTCCACTCTCGTTCAGATGGAACTCTTTGGAAAGGACTTTGTTTTCAAAGTATGGATTTTCATCGTAATAAAAATCTATTCTGTAGCCCGATTTGATATCTTCAAACTCTGTA
>TU552992
TCTGCCCTACCCCAGCATAGACCACAAACATTGCAAGAACTGATAGGAATGAGCTAGTACTTTATCTGTTGACTTAACCACATTTTTTTTAGGGATCTACTCCCaactgaacaaaagtataaaaACTGGAGGGGTCCACTAGTGCCAAGTCAACGCACCATGGCTTTTGTTAATTTAAATCGCACAACCGTTAACAGGAAGAACAATTTATAGAAATTGCCATTCATTTAACTACAAGATGGCATGCTTATTCTAGTAGTTCCCCCCCCTAGATGAATGTGGGAATTATTGTGGTTTGACAATTCAAAGGCAAGAATTTGACATTGTTTTAGAGGAGACAAAAATGAAACATGGCACAGACAGGAGAGGCTTCAGAATGAGGAAATGAAGCACAAAATAAAAGTAAGAAAATATGGGTGGATAaccaaatgggggggggggggggggggggtagcaaaGGGTATTGGTAGATTATTTAACTTTCCGGTTTAATCATCTTCTCCATCATCCTCCCCATCATCtccatcatcctcctcttcatcttcctcccCATCATCTTCATCACCCTCCTCATCAATGTCCTCAAGGCCTtcctcatcgtcatcatcatcttcaCCTTCACCCTCCTCATCATCCATGTCAGGAACCAGGTAGTACTGCAGGGGGTTTGGCCAGATGTCATCCTTGATAACCTCTCCCAGCTCATCTGCCCCAGCATCTGAGTGATCAGTGAACCAGGTGAAGAAGCTCTCTGGCTCTTCATGTTGCCTCTTCTTGCCGGCTTTGTTCTGTGTCTGGCTGGAGCGCTTTGTCAGGTCCTTTCCCGATTTCCATTTGATTTCTGTCGACTTTGAGGATGGGTCTCCACTCTCGTTCAGATGGAACTCTTTGGAAAGGACTTTGTTTTCAAAGTATGGATTTTCATCGTAATAAAAATCTATTCTGTAGCCCGATTTGATATCTTCAAACTCTGTA

Function

NR:

description
PREDICTED: protein SET-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473764.2 False 1793 mRNA 0.39 2 22644152 22646088
TU552991 False 1064 lncRNA 0.42 4 22642795 22644593
TU552992 True 975 lncRNA 0.44 5 22642795 22644593

Neighbor

gene id symbol gene type direction distance location
LOC110525501 LOC106585453 coding downstream 7761 22627955 ~ 22636391 (-)
LOC110525500 LOC106585450 coding downstream 26586 22593509 ~ 22617566 (-)
LOC110525497 LOC106585448 coding downstream 64754 22572786 ~ 22579398 (-)
LOC110525498 shlb2 coding downstream 71591 22550214 ~ 22572561 (-)
LOC110525495 LOC102784428 coding downstream 179791 22460769 ~ 22464361 (-)
ptgesl LOC106585457 coding upstream 36497 22682585 ~ 22692496 (-)
derl3 derl2 coding upstream 80997 22727085 ~ 22730428 (-)
LOC110525508 LOC106585459 coding upstream 84419 22730507 ~ 22746609 (-)
LOC110525513 LOC106585307 coding upstream 112548 22758636 ~ 22759601 (-)
LOC110525517 LOC105014836 coding upstream 129911 22775999 ~ 22777465 (-)
G486623 NA non-coding downstream 7185 22636754 ~ 22636967 (-)
G486612 NA non-coding downstream 28775 22615099 ~ 22615377 (-)
G486594 NA non-coding downstream 55957 22587974 ~ 22588195 (-)
G486586 NA non-coding downstream 63946 22580000 ~ 22580206 (-)
G486575 NA non-coding downstream 100516 22543363 ~ 22543636 (-)
G486642 NA non-coding upstream 20683 22666771 ~ 22667052 (-)
G486643 NA non-coding upstream 21728 22667816 ~ 22668420 (-)
G486647 NA non-coding upstream 28125 22674213 ~ 22674454 (-)
G486651 NA non-coding upstream 34292 22680380 ~ 22688647 (-)
G486658 NA non-coding upstream 42867 22688955 ~ 22690157 (-)
G485877 NA other downstream 363126 22280726 ~ 22281026 (-)
G485864 NA other downstream 380799 22260634 ~ 22263353 (-)
G485279 NA other downstream 809792 21833548 ~ 21834360 (-)
G484895 LOC106585423 other downstream 1209433 21431930 ~ 21434719 (-)
G484807 LOC106585304 other downstream 1345979 21296580 ~ 21298173 (-)
G486716 NA other upstream 191565 22837653 ~ 22840566 (-)
G486953 NA other upstream 605198 23251286 ~ 23258106 (-)
G487022 bicdl1 other upstream 739446 23385534 ~ 23385907 (-)
G487016 NA other upstream 743929 23390017 ~ 23392062 (-)
LOC110525180 hps4 other upstream 936948 23582127 ~ 23587892 (-)

Expression


Co-expression Network