derl3 (derl2)


Basic Information

Item Value
gene id derl3
gene name derl2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22727085 ~ 22730428 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605683.2
GCGTGCCATGACTATTATAATGTCGCTTTCGTGTTGCTCTGTTAAAGGTGCATCGCTGTTGCACCCGGACCTAATGGATCAACAAATGTATTAAGCGTCATAGGCAAAAACGAGTTTATTCTGACCATGGCTCACAGCTTCACTCAAGAATATTTCCAGATTCCTTCCGTTACCAGAGCGTACACTACAGCTTGCGTTTTGACTACAGCAGCGGTGCAATTGGAGGTAATCACCCCATTTCAGCTTTATTTCAACCCAGACCTTATCATTAGAAGATACCAGATATGGCGGCTGATCACCAACTTCCTCTTTTTCGGCTCACTTGGATTCAGTTTTTTGTTCAACATCATCTTTCTGTATCGTTATTGTCGTATGCTGGAGGAAGGGTCTTTCCGAGGCCGCACCGCAGATTTCGTATATATGTTCCTGTTTGGGGGTGTCCTCATGACTCTGTTTGGCCTCTTTGCCAACCTATTCTTCCTGGGCCAGGCATTCACCATCATGCTGGTGTATGTGTGGAGTAGAAGGAATCCTTACATACGCATGAACTTCTTCGGCCTTCTGAACTTCCAGGCACCGTTTCTGCCCTGGGTGCTCATGGGATTCTCATTGCTGCTTGGCAATTCCATTGTCGTTGACCTTCtagGAATTGGAGTAGGACACATCTACTACTTTCTGGAAGATGTGTTTCCAAACCAGCCTGGAGGCAGGAAGCTGCTGATGACACCAGAACTTCTtcgaACCGTGTTTGACACCCAAGAGGAAGACCCCAGCTACTTCCCACTCCCTGAGGAGCAGGCTGGAGAGTTTTGGCAGGACCAaggtggagatggaggggagcCCAATGACCAGGGGCAGTAGCATGGGGACCATCTAACCCCATATAAACCCAAGATATACTCCCAGCCCCACCGAAGAAACCAGGAGCCATCCAGCTGTGGATAGAGGGTTTACTCCTCAGGGATGTGGATGAAGAGCGCAGCAACGTACCATctgtacagttcagtgtgtccaCTGGGAGCCACCGTAGTGAGTTTGTTGCAGACTTCTTTCACTGAGTGTTATAACTAGAAATGTCAAATGCAATCAGAGGCCAATGAGCATTGCAACCTTTCCATCACCACATGCATTTCTGTCTGTGGTACTAATGGCACACAACCATTTGCCATGTCAAACAGAATCACACCTTTTAAATACAGGTGCAAACAAAATTTTTGCCTCGTCTTTGTTATTGACCTGCTGCTCGACTCATTCATAAATCTGCCGACTATCTGGAATCCTGTTACCGAGGGAACCTGCACCGTCTGCACTTTCCAACTATTGCCTTTGTGGGTGAAGCACTGCTGCCAAATAGAAATGGCTTAGCACACCACCAACAACTGGGTTGTGCCGGGTGTCGTAAGTGTGAACAAAGCATGCAAAACAGCCCAACAACTATGTAATAAGGCGGCAAACTTATTTTTACTTCCTAAATTAGTTTAATAACCTTTCATTTGGTTGTATGGTCACTataatataatttacaaagaCATAACACTTATCAAAAGCAATCAAGATCATTTCACTTTTATTTTTGTAAGAATTATTCAAATGTACAAAAAGACAACAAATACAACATAACAGAATATA

Function

symbol description
derl2 Predicted to enable misfolded protein binding activity and ubiquitin-specific protease binding activity. Predicted to be involved in endoplasmic reticulum unfolded protein response and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of Hrd1p ubiquitin ligase ERAD-L complex. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human DERL2 (derlin 2).

NR:

description
derlin-2-like

GO: NA

KEGG:

id description
K13989 DERL2_3; Derlin-2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605683.2 True 1629 mRNA 0.45 7 22727085 22730428

Neighbor

gene id symbol gene type direction distance location
ptgesl LOC106585457 coding downstream 34589 22682585 ~ 22692496 (-)
LOC110525506 LOC106585454 coding downstream 80997 22642795 ~ 22646088 (-)
LOC110525501 LOC106585453 coding downstream 90694 22627955 ~ 22636391 (-)
LOC110525500 LOC106585450 coding downstream 109519 22593509 ~ 22617566 (-)
LOC110525497 LOC106585448 coding downstream 147687 22572786 ~ 22579398 (-)
LOC110525508 LOC106585459 coding upstream 79 22730507 ~ 22746609 (-)
LOC110525513 LOC106585307 coding upstream 28208 22758636 ~ 22759601 (-)
LOC110525517 LOC105014836 coding upstream 45571 22775999 ~ 22777465 (-)
LOC110525531 LOC106585477 coding upstream 61379 22791807 ~ 22793761 (-)
LOC118964915 LOC106585477 coding upstream 63606 22794034 ~ 22797348 (-)
G486679 LOC106585456 non-coding downstream 14252 22712407 ~ 22712833 (-)
G486658 NA non-coding downstream 36928 22688955 ~ 22690157 (-)
G486651 NA non-coding downstream 38438 22680380 ~ 22688647 (-)
G486647 NA non-coding downstream 52631 22674213 ~ 22674454 (-)
G486643 NA non-coding downstream 58665 22667816 ~ 22668420 (-)
G486691 NA non-coding upstream 9067 22739495 ~ 22739694 (-)
G486692 NA non-coding upstream 10516 22740944 ~ 22741206 (-)
G486727 NA non-coding upstream 49575 22780003 ~ 22781555 (-)
G486721 NA non-coding upstream 83825 22814253 ~ 22827725 (-)
G485877 NA other downstream 446059 22280726 ~ 22281026 (-)
G485864 NA other downstream 463732 22260634 ~ 22263353 (-)
G485279 NA other downstream 892725 21833548 ~ 21834360 (-)
G484895 LOC106585423 other downstream 1292366 21431930 ~ 21434719 (-)
G484807 LOC106585304 other downstream 1428912 21296580 ~ 21298173 (-)
G486716 NA other upstream 107225 22837653 ~ 22840566 (-)
G486953 NA other upstream 520858 23251286 ~ 23258106 (-)
G487022 bicdl1 other upstream 655106 23385534 ~ 23385907 (-)
G487016 NA other upstream 659589 23390017 ~ 23392062 (-)
LOC110525180 hps4 other upstream 852608 23582127 ~ 23587892 (-)

Expression


Co-expression Network