LOC110525508 (LOC106585459)


Basic Information

Item Value
gene id LOC110525508
gene name LOC106585459
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22730507 ~ 22746609 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605680.2
TGTTGCGGGTGGTATTATCACTCCAGAGTCCAGACTGTAAAACGCGTATTTGAAGAAAGAAGAAAGAATCAGAACCTATATAAGAGCCCACAAGAAGCTGCGCCGTCACTCTTCGGCTGAAGAGAGAGCTGAAGAAAGAAGAAAGAATCAGAACCTATATAAGAGCCCACAAGAAGCTGCGCCGTCACTCTTCAGCTGAAGAGAGAGCTGAAGAAAGAGCTGTCCACGGGTCAAaaagatgatgataatgatgcaGACTTCTGTCCTATCTTGCGTCTTTACGCTGCAATGCCTCCGAAGCATGCATTGTTCGCCAGTGCCCGAAGCAATCAGCTACAAAGCGACGCCGGGATGGCTCCAGAGGTTTGATCTCCATGACgtaaagaagagaggaagagtggccCATCCTCAGGACACACTCAAAGACACAGCCTTGGCCATAGGAGACCCTGTAAAAGCAGCACTGGTAACTAACAACACTGAGGAGTCTAACCGCCCCCGGTGTGGCGTCCCTGACTACCCCACACTGAAGGATGTCATCTACAGGGGGAGACACAGGCAGAAACGCTTTGTCCTGTTTGGGGGGCGCTTGGAGAAAACTGACCTCACCTACAAAGTGGTTCGTTTCCCCTGGCAGATGAGCGAAGACAAAGTGCGGCGTGTCCTGCTGGAAGCCCTGAGAGTGTGGAGTGAGGTCACACCCCTCACATTCACTGAGGTCAGCAGTGGAAAGGCTGACATTGTCATTGACTTCACTAGTTACTGGCATGGAGATAACCTGCCCTTTGACGGCCCTGGGGGCATTCTAGCCCATGCCTTCTTCCCCAAGACCCACAGGGAGGGCGACATCCATTTTGACTATGATGAGGCGTGGTCCCTTGGCAACTACATGGGCACAGACCTCCTCCAAGTGGCTGCTCATGAGTTCGGGCATGTTCTTGGCCTGCAGCACTCCCAGGAACCGGGCGCAGTGATGTCCCCCTATTACAGCTTCTCCTATCCCCTGGAGCTGAGCGAGGATGACAAGCTGGGGATCCAATACCTGTATGGCCCTCGTCCACATGTCCAGCCCCCATCTCCACCCCAACCACTGCCACAAATCACTACAGATACCAATGAGATCATTAGTAGTATTCCTGACGCCTGCCAGACAGACTTCGATGCTGTGTCTATGATTCGCGGAGAGCTGTTTTTCTTTAAGTCACGCTATGTGTGGCGCATTCGGGAGGGGCGGCTGGAGGCAGGCTACCCCGCGCTGGCATCCCGCCATTGGAGGGGGATTCCAGAGAACATTGATGCAGCCTTTGAAGACCAATCAGGGAATATCTGGTTCTTTCAAGGTCAAAGCTACTGGGTGTTTGATGCAGAGAGACAGATCACAGGGCCAGACTCTGTGCAGAGCCTTGGCCTGTCAGTCTCCCACATCCAGGCAGCTCTGCTCTGGGGCCAGGACAACAACTacaacacctacttattcaagtcAGGCAGCTACTGGAGGTTTAGCCCCAAGGAGAACCGCGTCGACTCTATCTACCCTCGCAACATGCAGGACTGGCGTGGCATCCCCAGTGATGTCGACGCAGCCTTCAAGGACCAATATGGCTATGCCCACTTTATCAGAGGGAGGCAGTACTGGAAGTTTGATCCTGTGGAGATGAATTCACTACAGGGGTATCCTCGCTATTTTCACATGGACTTCTTTGGTTGCAGAAATGTATGAGTATCATTAGGTGATAATGCTCTCAAGATCAAattcaagtccaagtcaagtccaACCATGCTCTTGTCCTTATGGTCCTTTCAAATACAACATTATAATCTTGTGCATTTTGGGGAACAAGACCATTTTGCGTAACAAATTATTTAGGTGAAGACTTTATTACTTAACTTGAGTGATTTCCACAAAATGCTTGCTATTCctcaaatatgtttttgtttactCATTATCTTAACACTGAATGGACTAGATCCTTTTTTCTTCTCAGGAAAACACTAATTCAAATGTTTCCTCAGAGTTTGGACTTCATGTGCAGCTATATAGTTGTATTTATTTGTTGCTGGGTTGGGTTTTACTCTctggtgctatctagaaccttaaagggttcttcggctgtccccataggagaacgctTTGAAGgacccttgttggttccaggtagaacccttttggttccaagtagaaccattttggattcaatgtagaaccctttgCAAGAGTGTACGGTCAGAAGAGGCGTTGGTAAAGACCGTGGGCTGAGAAGACAGCGCCATCTGCAGGAGGTTAGTAACTGTATCGTGATGTCTAATTTACTCAAGAGATGTTGCAGTTTGTTTTCTTCTTAAAGGGAAATATGTTTAAGGCACTGCAATTTTCTATGAAGTCTTTTTTTTTCGTTTTACTAATTAAGGTGCTAAATCTGGAAATCACTGACAATCAGGGACACTTTTTGTCCTCTAAAGTTATGAACACTTACTCACAGTCTTACTTGTAACACGGTCACATTTATGTTCATTCTAAGATAGCTGTACTTAATTTAATAATGGTCCATCCATGGTGCTCTCAGTCAGTCCAAATGGATGGAATGTTCCATCCTTGGTGCTGCATGATGTGAATCTAAGCCATGATGATAACTTACTTTTTGGAAGGGCCATTCATTACATTTTGTAAGTGCAGGGCACTGATGTTGTTAGTTCTTCTTAGCCAGGATACAGCCTGAGATCCTCTGGTAGGGCACTATTGACCATTCCAAAATCTGGTGTAGGTTGAAAACGAAAGGAGACTGGGCGTTTTCCATTAGGGAAAACCTTTGAACCTAGCCTTTGAAATGGTCTGCCAGAGGAGACCAGGCTGCAGATTCAGTGGCTCTTTTTAAATCTCTGCTGATGACACTTTTATAAAGATGCTTTTAATGTACGATTTAAATGATTTTAATTAGCTATtatttctttgtttctttgttaGTACTTTTATTTTTTGATGTGAAGCACTTTGTTACCTGTATTGAAAAGCGCTGTATAAATAAagttattattagtattagtattattatatCTGCTTTACTGTAAAATATGTATTTGTGATATTTGTGTCATTGTTTGACAGCCAATAGCCGCAGCCTGGCAGATCTCTTCTAAAGTTTTGGGTGTTGACTATAGAGCTCAGAATCATTTCAAGACATAACTGTCCTTTAATTAAAATAGCCATCATCTGTTCTGATTACATATCTTTATGTGTTAACATGTTTTTCTACTCAAATGCCACATTTACTATGCAAATACAAAAATATTAATAACGTACTGTGTTTTGGTACAAATATAATATTTAAGCTTGA
>TU553133
ATTATCTTAACACTGAATGGACTAGATCCTTTTTTCTTCTCAGGAAAACACTAATTCAAATGTTTCCTCAGAGTTTGGACTTCATGTGCAGCTATATAGTTGTATTTATTTGTTGCTGGGTTGGGTTTTACTCTctggtgctatctagaaccttaaagggttcttcggctgtccccataggagaacgctTTGAAGgacccttgttggttccaggtagaacccttttggttccaagtagaaccattttggattcaatgtagaaccctttgCAAGAGTGTACGGTCAGAAGAGGCGTTGGTAAAGACCGTGGGCTGAGAAGACAGCGCCATCTGCAGGAGGTTAGTAACTGTATCGTGATGTCTAATTTACTCAAGAGATGTTGCAGTTTGTTTTCTTCTTAAAGGGAAATATGTTTAAGGCACTGCAATTTTCTATGAAGTCTTTTTTTTTCGTTTTACTAATTAAGGTGCTAAATCTGGAAATCACTGACAATCAGGGACACTTTTTGTCCTCTAAAGTTATGAACACTTACTCACAGTCTTACTTGTAACACGGTCACATTTATGTTCATTCTAAGATAGCTGTACTTAATTTAATAATGGTCCATCCATGGTGCTCTCAGTCAGTCCAAATGGATGGAATGTTCCATCCTTGGTGCTGCATGATGTGAATCTAAGCCATGATGATAACTTACTTTTTGGAAGGGCCATTCATTACATTTTGTAAGTGCAGGGCACTGATGTTGTTAGTTCTTCTTAGCCAGGATACAGCCTGAGATCCTCTGGTAGGGCACTATTGACCATTCCAAAATCTGGTGTAGGTTGAAAACGAAAGGAGACTGGGCGTTTTCCATTAGGGAAAACCTTTGAACCTAGCCTTTGAAATGGTCTGCCAGAGGAGACCAGGCTGCAGATTCAGTGGCTCTTTTTAAATCTCTGCTGATGACACTTTTATAAAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605680.2 False 3332 mRNA 0.45 8 22730507 22746609
TU553133 True 959 lncRNA 0.40 1 22730938 22731896

Neighbor

gene id symbol gene type direction distance location
derl3 derl2 coding downstream 79 22727085 ~ 22730428 (-)
ptgesl LOC106585457 coding downstream 38011 22682585 ~ 22692496 (-)
LOC110525506 LOC106585454 coding downstream 84419 22642795 ~ 22646088 (-)
LOC110525501 LOC106585453 coding downstream 94116 22627955 ~ 22636391 (-)
LOC110525500 LOC106585450 coding downstream 112941 22593509 ~ 22617566 (-)
LOC110525513 LOC106585307 coding upstream 12027 22758636 ~ 22759601 (-)
LOC110525517 LOC105014836 coding upstream 29390 22775999 ~ 22777465 (-)
LOC110525531 LOC106585477 coding upstream 45198 22791807 ~ 22793761 (-)
LOC118964915 LOC106585477 coding upstream 47425 22794034 ~ 22797348 (-)
LOC110525528 LOC106585464 coding upstream 95871 22842480 ~ 22848238 (-)
G486679 LOC106585456 non-coding downstream 17674 22712407 ~ 22712833 (-)
G486658 NA non-coding downstream 40350 22688955 ~ 22690157 (-)
G486651 NA non-coding downstream 41860 22680380 ~ 22688647 (-)
G486647 NA non-coding downstream 56053 22674213 ~ 22674454 (-)
G486643 NA non-coding downstream 62087 22667816 ~ 22668420 (-)
G486727 NA non-coding upstream 33394 22780003 ~ 22781555 (-)
G486721 NA non-coding upstream 67644 22814253 ~ 22827725 (-)
G486817 NA non-coding upstream 240305 22986914 ~ 22988702 (-)
G486815 NA non-coding upstream 259525 23006134 ~ 23010715 (-)
G486949 NA non-coding upstream 466087 23212696 ~ 23214656 (-)
G485877 NA other downstream 449481 22280726 ~ 22281026 (-)
G485864 NA other downstream 467154 22260634 ~ 22263353 (-)
G485279 NA other downstream 896147 21833548 ~ 21834360 (-)
G484895 LOC106585423 other downstream 1295788 21431930 ~ 21434719 (-)
G484807 LOC106585304 other downstream 1432334 21296580 ~ 21298173 (-)
G486716 NA other upstream 91044 22837653 ~ 22840566 (-)
G486953 NA other upstream 504677 23251286 ~ 23258106 (-)
G487022 bicdl1 other upstream 638925 23385534 ~ 23385907 (-)
G487016 NA other upstream 643408 23390017 ~ 23392062 (-)
LOC110525180 hps4 other upstream 836427 23582127 ~ 23587892 (-)
G486691 NA non-coding upstream 7599 22739495 ~ 22739694 (-)
G486692 NA non-coding upstream 9048 22740944 ~ 22741206 (-)

Expression


Co-expression Network