LOC110525517 (LOC105014836)


Basic Information

Item Value
gene id LOC110525517
gene name LOC105014836
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22775999 ~ 22777465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605690.2
gctaTTAGTTATAAAACATCTTTGCCATGGCTATGAGTCAAACAGGAAATACACGGGGCTGGAGAGGCTAGCTTTCAAACAAGCAGGACATCTTTGCCATTCACCCATAGCAGGacctaaataaaaaatattagctATCTAGCTTAATAATTTCCACGAACTTGTTTGCAAGGATTTAAACGAAAGATGTCCATTGGAGTGCCAATCAAAGTCCTTCATGAAGCTGAGGGCCACATCGTTACCTGCGAGACCAACACCGGGGAGGTGTACCGGGGGAAACTCATTGAAGCTGAGGACAACATGAACTGCCAGATGGCCAACATCACAGTGACCCACAGAGACGGCCGTGTAGCCCAGCTGGAGCAAGTGTACATCCGAGGCAGCAAGATTCGATTCCTTATTCTACCAGACATGCTGAAGAATGCACCAATGCTAAAGAGTATGAAGAACAAGAACCAGGGAGCTGGAGCTGGGAGAGGCAAAGCTGCCATTCTCAAAGCACAAGTGGCTGCTAGGGGTCGAGGACGTGGAGGGATGGGAAGAGGAAATATATTCCCGAAAAGGCGATAATTGTAAaaattattttctacattctatAACACCgcttgtttgttattttgttgataAATGATGCAAAATACCATTTCCATATTAAAATGATTTTCTTAATATT
>XM_021605691.2
ATGGCTATGAGTCAAACAGGAAATACACGGGGCTGGAGAGGCTAGCTTTCAAACAAGCAGGACATCTTTGCCATTCACCCATAGCAGGacctaaataaaaaatattagctATCTAGCTTAATAATTTCCACGAACTTGTTTGCAAGGATTTAAACGATGTCCATTGGAGTGCCAATCAAAGTCCTTCATGAAGCTGAGGGCCACATCGTTACCTGCGAGACCAACACCGGGGAGGTGTACCGGGGGAAACTCATTGAAGCTGAGGACAACATGAACTGCCAGATGGCCAACATCACAGTGACCCACAGAGACGGCCGTGTAGCCCAGCTGGAGCAAGTGTACATCCGAGGCAGCAAGATTCGATTCCTTATTCTACCAGACATGCTGAAGAATGCACCAATGCTAAAGAGTATGAAGAACAAGAACCAGGGAGCTGGAGCTGGGAGAGGCAAAGCTGCCATTCTCAAAGCACAAGTGGCTGCTAGGGGTCGAGGACGTGGAGGGATGGGAAGAGGAAATATATTCCCGAAAAGGCGATAATTGTAAaaattattttctacattctatAACACCgcttgtttgttattttgttgataAATGATGCAAAATACCATTTCCATATTAAAATGATTTTCTTAATAT

Function

NR:

description
PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform X3

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component

KEGG:

id description
K11088 SNRPD3, SMD3; small nuclear ribonucleoprotein D3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605690.2 False 673 mRNA 0.43 4 22775999 22777465
XM_021605691.2 True 642 mRNA 0.44 4 22776000 22777439

Neighbor

gene id symbol gene type direction distance location
LOC110525513 LOC106585307 coding downstream 16398 22758636 ~ 22759601 (-)
LOC110525508 LOC106585459 coding downstream 29390 22730507 ~ 22746609 (-)
derl3 derl2 coding downstream 45571 22727085 ~ 22730428 (-)
ptgesl LOC106585457 coding downstream 83503 22682585 ~ 22692496 (-)
LOC110525506 LOC106585454 coding downstream 129911 22642795 ~ 22646088 (-)
LOC110525531 LOC106585477 coding upstream 14342 22791807 ~ 22793761 (-)
LOC118964915 LOC106585477 coding upstream 16569 22794034 ~ 22797348 (-)
LOC110525528 LOC106585464 coding upstream 65015 22842480 ~ 22848238 (-)
LOC110525523 LOC106585466 coding upstream 71065 22848530 ~ 22895023 (-)
LOC118965095 NA coding upstream 111630 22889095 ~ 22889286 (-)
G486692 NA non-coding downstream 34793 22740944 ~ 22741206 (-)
G486691 NA non-coding downstream 36305 22739495 ~ 22739694 (-)
G486679 LOC106585456 non-coding downstream 63166 22712407 ~ 22712833 (-)
G486658 NA non-coding downstream 85842 22688955 ~ 22690157 (-)
G486727 NA non-coding upstream 2538 22780003 ~ 22781555 (-)
G486721 NA non-coding upstream 36788 22814253 ~ 22827725 (-)
G486817 NA non-coding upstream 209449 22986914 ~ 22988702 (-)
G486815 NA non-coding upstream 228669 23006134 ~ 23010715 (-)
G486949 NA non-coding upstream 435231 23212696 ~ 23214656 (-)
G485877 NA other downstream 494973 22280726 ~ 22281026 (-)
G485864 NA other downstream 512646 22260634 ~ 22263353 (-)
G485279 NA other downstream 941639 21833548 ~ 21834360 (-)
G484895 LOC106585423 other downstream 1341280 21431930 ~ 21434719 (-)
G484807 LOC106585304 other downstream 1477826 21296580 ~ 21298173 (-)
G486716 NA other upstream 60188 22837653 ~ 22840566 (-)
G486953 NA other upstream 473821 23251286 ~ 23258106 (-)
G487022 bicdl1 other upstream 608069 23385534 ~ 23385907 (-)
G487016 NA other upstream 612552 23390017 ~ 23392062 (-)
LOC110525180 hps4 other upstream 805571 23582127 ~ 23587892 (-)

Expression


Co-expression Network