LOC110525531 (LOC106585477)


Basic Information

Item Value
gene id LOC110525531
gene name LOC106585477
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22791807 ~ 22793761 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979661.1
CACTTAAGGATTTCTTCACAGGGCTGAAGCCACCCGGATCCGAAAGGACAGAAAATGCTTCTTCCAAAGAGACCCTTGGGGAAATCCTGGTTGCTATCCAGAGTGAAATCTCAAACTTAGGGCGAATGAAGGATTCCAGGGAGCTCCTTCAGATCAATGATATGGTAGGAACTATGCTGAAGGAGGttgagaaaagtgaggatgacAGTGAACAAGTCTGCCAAGACATCCCTAGAACCTGTTCATCTTTGTCCACTTCTTTAAATGGTCGTAGTTCCTTGTCCAGCTCTTCAAAGAGTCCTAGGTCAGAGTGTGAGTTAGAGATCaacctccctggcactcccatcccTGACGAAGTGCCTTTCGATCTGACCTGCCCCATCGTCAGGAGCTCCTTCATCGACACCAGGGTCTCTAAAATGCCAGATATTTCTTCAAGTGACCTAAAGACAAAGATGATGGCACACACAGATGAACGATCCTCCACTCCTTCTTTCACAAGCAAGGGAACCTCTTTGGTACCAAAGGGAGATGGGATTGACATTGAAGAGAAGGAAGAGTGTATCCCCAGCAGCTCTGGCCATCTGAGGGAGCTCTTAATCACCCCGGACATCAGCAGTGCCACTgcattcccactgcagtacttgatGGACTCCAGCAAAGATGATGTCATCTGTTTGGTCACCATACTGGTGATAAGGTTGCTATCGGAGATCAGACCCTCAGCCCTAGATGGACCCTCCCAACAGGCAGCAGATCTGACAGAAACATCTCAGCAACTCATCAGACAagtcctgtctgagttctgtgctgCATCCAGATTCTCCAGGACAAAGGCATATTCCCAGAACCTGAACATCCAAAGGGTGTTCAGAGGTGTACATAAAAACCTCATGGAGGAGTTTGGCTCTTATAACACCCTGCAAGCGGCTATTTCCTCCCAGGACCCTGCATTTGACAGAGTCCTGGTAAAGtccttgacccagcagctggtacagggatgcaaggaggcgtcaagaccagcttctgctgcaacaaacccatcagaccaggctgagacagagaggggggctgagcagaaagcaagaaggagcttcctttgcttttcaatgaccaaactcaggatcaacttcaagCGTTCCAAGAGAGGAAACAAAAAGGACTGCCATTCAGTCCAGGAACAGACTGAGATTCCCTCTACTGATGGACATTGCATAGctccagttgGAGAGGTTTCTCCCTCGATATCTCAGCCTGTCAAAAAACAATCCTTGATTGTCAGGGTCTTTTCAGCAATGATGAAGCCATTCAGGCGCTTCACCAAGAAGAACCTGTAACCTCTTAAGCTGCATGAAGATCTACTTTTGTAACAGCAAGACTTTTGAAAAGAGGAATTTCTGCATGTCTACCCTTTCaaagtctatttgatcaaataaatgcaaattattttacaagaatttcaagtgttttggaagattAGTAAAACTGAAGCAGCTTTTCTCAGAGAAATGCACTAGTTCTCCCTTGGTTACACATTTATTGTGCAGTTTTTGAGTTGGCAGgacttggggcagcaggtagccttgtggtta

Function

NR:

description
uncharacterized protein LOC110525522

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979661.1 True 1592 mRNA 0.47 3 22791807 22793761

Neighbor

gene id symbol gene type direction distance location
LOC110525517 LOC105014836 coding downstream 14342 22775999 ~ 22777465 (-)
LOC110525513 LOC106585307 coding downstream 32206 22758636 ~ 22759601 (-)
LOC110525508 LOC106585459 coding downstream 45198 22730507 ~ 22746609 (-)
derl3 derl2 coding downstream 61379 22727085 ~ 22730428 (-)
ptgesl LOC106585457 coding downstream 99311 22682585 ~ 22692496 (-)
LOC118964915 LOC106585477 coding upstream 273 22794034 ~ 22797348 (-)
LOC110525528 LOC106585464 coding upstream 48719 22842480 ~ 22848238 (-)
LOC110525523 LOC106585466 coding upstream 54769 22848530 ~ 22895023 (-)
LOC118965095 NA coding upstream 95334 22889095 ~ 22889286 (-)
LOC110525519 LOC106585467 coding upstream 103501 22897262 ~ 22935152 (-)
G486727 NA non-coding downstream 10252 22780003 ~ 22781555 (-)
G486692 NA non-coding downstream 50601 22740944 ~ 22741206 (-)
G486691 NA non-coding downstream 52113 22739495 ~ 22739694 (-)
G486679 LOC106585456 non-coding downstream 78974 22712407 ~ 22712833 (-)
G486721 NA non-coding upstream 20492 22814253 ~ 22827725 (-)
G486817 NA non-coding upstream 193153 22986914 ~ 22988702 (-)
G486815 NA non-coding upstream 212373 23006134 ~ 23010715 (-)
G486949 NA non-coding upstream 418935 23212696 ~ 23214656 (-)
G486952 NA non-coding upstream 438356 23232117 ~ 23232587 (-)
G485877 NA other downstream 510781 22280726 ~ 22281026 (-)
G485864 NA other downstream 528454 22260634 ~ 22263353 (-)
G485279 NA other downstream 957447 21833548 ~ 21834360 (-)
G484895 LOC106585423 other downstream 1357088 21431930 ~ 21434719 (-)
G484807 LOC106585304 other downstream 1493634 21296580 ~ 21298173 (-)
G486716 NA other upstream 43892 22837653 ~ 22840566 (-)
G486953 NA other upstream 457525 23251286 ~ 23258106 (-)
G487022 bicdl1 other upstream 591773 23385534 ~ 23385907 (-)
G487016 NA other upstream 596256 23390017 ~ 23392062 (-)
LOC110525180 hps4 other upstream 789275 23582127 ~ 23587892 (-)

Expression


Co-expression Network