LOC110525529 (ppp1cc)


Basic Information

Item Value
gene id LOC110525529
gene name ppp1cc
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23061031 ~ 23064135 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605717.2
GCACACCTAGGAGGGTAGTTAATCTTAGGCCAGCACAGTAGATGGCAGCGGCCATCAAATCCACCCAGAAGGTTGTTCGGGCAGATTCCTCTGAAGTAGGAAAGTGGGTGTGGCTAGATCTGAGGGCATCGTTAACGGCTAATAGATAGGCTAACGTTTATTTTGTCCCGGTAGACGGCTAATATTAGGTGTTTTGTATAACACTAAGATGTTGAAGTAGTTAGCTAGGTATAATATAACTTTGTATGATAACCAAATAACAGGGTGTCATTTCTACACGTTCTTGGAACCAGCAATTTAGTGAAGCTAGCCAATCGTAGCCaccactagctaacgttagctaaccagCACTAGATTTGCAGCTCACTCAGCCATTTTTTCTACGTCGCCATGGCCGATGTTGACAAACTCAACATAGACAGTATCATCCAGCGTCTTTTAGAAGTCAGGGGAGCAAAGCCTGGTAAGAATGTGCAGCTGCAGGAGAACGAGATCCGAGGATTGTGCCTCAAGTCCAGGGAGATATTTCTCAGCCAACCTATCCTCCTTGAACTTGAAGCCCCCCTCAAGATCTGTGGTGACATCCATGGGCAATATTACGACCTATTGAGGCTGTTTGAGTATGGGGGCTTCCCTCCTGAGAGCAACTACCTATTTCTGGGAGACTATGTGGACAGGGGGAAGCAGTCTCTGGAGACCATCTGTTTGCTTCTGGCCTACAAAATCAAATACCCAGAGAACTTCTTCCTGCTGAGGGGAAACCATGAGTGCGCCTCCATCAACAGAATATATGGATTCTATGATGAGTGTAAAAGAAGGTACAACATCAAGCTCTGGAAAACATTTACAGATTGCTTTAACTGCCTCCCTATTGCTGCCATTGTTGATGAGAAGATCTTCTGTTGCCATGGAGGGTTGTCACCAGACCTCCAGTCCATGGAGCAGATCAGACGCGTCATGCGGCCCACCGACGTCCCCGACCAGGGCCTCCTGTGTGACCTGCTCTGGTCAGATCCAGACAAGGATGTCCTCGGCTGgggagagaatgacagaggaGTCTCATTTACTTTTGGTTCAGAGGTTGTGGCAAAGTTCCTGCACAAACATGATTTGGATCTGATCTGTCGCGCCCATCAGGTTGTTGAGGACGGCTATGAGTTCTTCGCCAAGCGACAGCTTGTGACTTTATTCTCAGCACCCAACTACTGCGGGGAGTTTGACAATGCTGGTGCTATGATGAGTGTGGATGAGACCCTCATGTGCTCTTTTCAGATTTTGAAGCCCGCTGAGAAGAAGAAGCCAAATGGCAGCCGTCCAGTCACACCCCCACGGAACATGGTCACCAAGCAAGGCAAGAAATAAGGTGGCATGAGTGGACTTATGTCCTGCTCTCTATTCTGCTTTTGTCTTTCGCGTCTGAAGGGTTGGTTGCCCTTTGTGCTGCCAATACTGAAAAGATATCCACTGCAACCTGATGAAagcaaaatgttttgttgttttgtccaCAAGGGTAAATGGATATGTCACCATGAAAACCTCAGGTGTTTTGCACTCCATTGCAACTAGTCTTTGCCACATATGACTGTTCAACCAGGAACAATGTAACAATATGGCTGATAATGCACAGAAATGCCTTGTTTGAAGCTGTGCAGAGTTGTTTCACAATTTTTTCATTTCATGTTTCATCAACTTCTGTCACCACCTGTTTCTCACTGTCAATGTCAATAATGCAATTAATGGTTCTTAAAACAACTATGGAAATATCACAAGACACTTAGTTGTTTATTTCTGTATAACTTTCTTTATCATAGAACATTGAATCTTCACTCTGCTCCTGCATCTTCACCATTTTTAAAACAAGTATTGTGCTGAATTAAATGAAGAAA

Function

symbol description
ppp1cc Acts upstream of or within angiogenesis. Orthologous to human PPP1CC (protein phosphatase 1 catalytic subunit gamma).

NR:

description
PREDICTED: serine/threonine-protein phosphatase PP1-gamma catalytic subunit

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605717.2 True 1886 mRNA 0.45 7 23061031 23064135

Neighbor

gene id symbol gene type direction distance location
LOC110525530 LOC106585473 coding downstream 11232 23029762 ~ 23049799 (-)
anapc7 LOC106585471 coding downstream 62964 22992473 ~ 22998067 (-)
LOC110525519 LOC106585467 coding downstream 125879 22897262 ~ 22935152 (-)
LOC110525523 LOC106585466 coding downstream 166008 22848530 ~ 22895023 (-)
LOC118965095 NA coding downstream 171745 22889095 ~ 22889286 (-)
LOC110525124 LOC106585475 coding upstream 158960 23223095 ~ 23315185 (-)
LOC110525535 LOC106585482 coding upstream 332889 23397024 ~ 23410695 (-)
LOC110525536 LOC106585483 coding upstream 346921 23411056 ~ 23446557 (-)
LOC110525537 pxn coding upstream 395405 23459540 ~ 23490066 (-)
LOC110525539 NA coding upstream 426399 23490534 ~ 23492812 (-)
G486815 NA non-coding downstream 50316 23006134 ~ 23010715 (-)
G486817 NA non-coding downstream 72329 22986914 ~ 22988702 (-)
G486721 NA non-coding downstream 233306 22814253 ~ 22827725 (-)
G486727 NA non-coding downstream 279476 22780003 ~ 22781555 (-)
G486692 NA non-coding downstream 319825 22740944 ~ 22741206 (-)
G486949 NA non-coding upstream 148561 23212696 ~ 23214656 (-)
G486952 NA non-coding upstream 167982 23232117 ~ 23232587 (-)
G486953 NA non-coding upstream 190734 23251286 ~ 23258106 (-)
G487001 NA non-coding upstream 286558 23350693 ~ 23351167 (-)
G487005 NA non-coding upstream 291380 23355515 ~ 23355898 (-)
G486716 NA other downstream 220465 22837653 ~ 22840566 (-)
G485877 NA other downstream 780005 22280726 ~ 22281026 (-)
G485864 NA other downstream 797678 22260634 ~ 22263353 (-)
G485279 NA other downstream 1226671 21833548 ~ 21834360 (-)
G484895 LOC106585423 other downstream 1626312 21431930 ~ 21434719 (-)
G487022 bicdl1 other upstream 321399 23385534 ~ 23385907 (-)
G487016 NA other upstream 325882 23390017 ~ 23392062 (-)
LOC110525180 hps4 other upstream 518901 23582127 ~ 23587892 (-)
LOC110525552 LOC106585495 other upstream 649740 23713875 ~ 23717830 (-)

Expression


Co-expression Network