LOC110525536 (LOC106585483)


Basic Information

Item Value
gene id LOC110525536
gene name LOC106585483
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23411056 ~ 23446557 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979667.1
ATCGCTCGTATCATGAACCGGAAGTGACTACAAGTTCTCCCTAGTTTGAGACCGGCAAGATGGCAGCGGACACGCAGGTTTCGGACACACTGAAGAAATTTGCTGTGAAAGTGACCACAGCCAGTGTAAGCGAGCGTAAGGAGATTCTTGGCGAACTGAAACAGTGTATTAGCGGCAAAGAGCTACCAGAGCCAGCCATCAAAGGGCTATGCAAGCTCTTCTGTCTCACTCCACACAGATACAGGGATGCTGCATCTCGACGAGCCCTCCTCTCCGTCATTGGCCTACTGGCCGAGTCTCAACCTGAAATCTTAGCAACCAGCCTTCTCCACTGCCTCCTCAACTGTGGCGTCATTAGCAAGAATGGAGCACCCAGTAAGAGCACAGGCTCGGCTGCCTTCACCGGGCTGGCCTGGACCTGCCTGTTGGTTCGCTCTGTGTTCTTGGCTCCAGAGAAAAGAGTGGGCCCCATCTGGAAGAAACTGGTGGAGGTACAGAGTTTACTGCTGGCTGAGGTGGTGGGAGGTGCTCAAGCAACAGCACTGAAGTCAACCCTGAAGAACCTGAGCCACCTATGGAAAAAGAACCCTGGCCTGGCAGATCAGTATATAAGCACCCTGTTGAGTCTGGAGCAGAACCCCAGCTCACTGGCTCTGCTGGGGGTGTGTCTGGACTTCTGCACAACTCACAAAGACATGGCCACCGTAGAGAAACACAAGAGTGCCATATTGGACCTGTATATGAAGGCAGTACTCATGAGCAAGACTAGACCACACCAACACCTATTGGACAAGAGTGGTTCCTTGCTGCGCCATGTCTCCCACTCTGAGTTCAAGGAGCTGCTGCTGCCTGCCCTGCAGAAGGCCATGCTCCGCAGCCCAGAGAATGCCATGCAGAccgtCTCGTGTCTACTGGCTTCAGTGACTCTTGACCTCAGTCAGTATGCCATGGATATTGGAAAAGGCATTGCAAGTCAGCTGAAGGCCAATAATCCCCAGCTGATGGAGCAGGCAGTGCAGGCCATGCAGAACCTGGCCAAGCAGTGTAGTGACCCTAGCGCTGTACAGGATGTCATAACACACCTCTTCAGCATCCTGGGAGGGTCAGAGGGGAAGCTCACAGCGTTCGGCCAGAAGATGAGTGTCCTGTCAGGTATCGGCAGCTGCAGCCATCATGCTGTGTCGGGCACCTCTAGCCAAACTCTCAGCTCTGCAGTCGCTGTGCTGTTCATCCCTTATCTGCAACAAGAAGTCCATGAGGGGACCTTGGTGCACGCAGTGGCTATGCTGTCTCAGTGGAGTGGGCGGCTGACGGTGGAGGTCCCCAAGGCTCTGCTGGACTGGTTCAAGAAGGCCTTCACCCTCAAGACGTCGACCTCTCCTGTCCGCCACGCATACCTGCAGGCCATGCTGGCGGCATTCAAAGgtgacACTCTGGGACAGGTGTCTGACCTCGTGCCCCTCCTTCTCCAGACAGTGGAGAAGGCTGCGGCCCAGAActcccagcatgctctgctcTCAGAGGGCGTGGCTGCTGCTGTTCTCCTGAGTCGACTATCTCTGCTGGAGACTCAGACGGAGGCCAAGTTGGCTGTCTTCTGGACCCTGATCCTGGATGAGAAGAAACCTTTATTCACCACAGAGAAGTTCCTCTCCCAGGCCAGTGAGGAAGCGTTGTGCACAGTGATACAGCTGTGTGAGAGAATCTTCTTGGACCACTCCCACCGACTCACCAACGGCAAATCACCGATGTACCACCGTGCCACTGTGGCGGTGCTGCTGTCTCGTAGTTGGCGTGTGCGGAAGCGGGCACAGCAGACCGTGAAGAAGCTGCTCTCCTCCCTGGGAGGCTCCGGGCTGGCCCACGGCCTTCTGGGAGAACTAAAAGTGGTAATCAACAAACACAAGGTGTTGCCTCAGGAGGTGCTGCAGACAGAGTCAGGGGAGTTGTCTGAGGTGGGAAAGGCCTACAGTCCCCCTCGCGTCCTGCTGGAGGCGCTGTGTGTGGTGTGCTCTGTGGCCGGCCAGTGGAACGACACAGCCGAGGCAGACAAGATTGCCATGGAGATCCTGGTCGtcacccaccatccctccatAGTTGAAGCTCGACCCGGTTTCTGGCCGCACCTGCTGTCCAGCATGAACATCAAGGCCGACGAGTTCATAGACAAGAACCTGGATGACATTCTGCCACGGCTGTTGCAGGCCAATGCTGACAATCAGGCTATAAGGAATGCGGTCGGTGCCCTGTCCGGTCTCTCTCCCATCAAGCTGCTGCCACGGGTGATGGTGCATGTGACACAGTGGCTATCCAATCCTGCGTTGCGGCAGGTCACCAGGGAGGAGTACGCCATCATGCTAACCCCTGAGGGAGAGCTGTATGACAAGAGCATCATCCAGAGTGCCCAGCAGGAGAGCACAAAGAAGGGCAACATGAAGAGGGAGAACAAGGCCTACTCGTATAAGGAACAGATCATAGAGCTAGAGCTGCAAGAGGAGATCAAGAAGAAGAAAGGCATCAAAGACGAGTTGCAGCTGACCAGCAAACAGAAGGAGATGATGCAAGCCCAGCTGGAGAAAGAGTCCTCCATTCGCAAGAGACTACAAGGGTTGGACATGGAGCTGCAGTGTGCGGTGGGTCTGCTGGAGGCAATGTTGATCCAGAAGCCTCCCCAGATCTCCTGGCAGCTCCCAGGGGTCCTCCAGGTCCTacttcccctcctccactcccccctgGCCGCCCCACGCCTGCAGCAGGCCTTCCTCGACATAGGAGCCTGCCTCATGCCCACTGAGCTGCACTACCTGGCTGTGCTGGTGGGCCGGGTGACACTGCGCCTGATGAAACCTGAGTGTGATCTGGACGAGGCCTGGGGACAGGAGGATCTAGAAACAGCCACCCAGCGCACTGTCGGGCTGCTGCACATGCACACTGTCCCACACAGAGAGGGCAAGGCTGGTGACATGGCTCCACTGTCTGCCCCAGCCTTCTCCTTCTGTTTCCCCCTGCTCAACACCGTGCTCAGGGACTCCTCAGGCAGCACTGAGGAGACGGAGAGCATGCAGGTCCGTACCCTGCAGGTCATCAATGTGCACGCTCAACTTCGCGCTGAGGTTGACACCACAGACATACTCATCGATGAGAATGGTCCTGAGCTGCTACCTCGTTTCAGTATGCTGCTTCTCCTGACCAGAGTCATCTCCACTGCAGCACCCAGGCTGCAGgtgcTGGCGTCCCAGTGTCTGACAGCAGTGTGTgccagtggaggaggagagaagggctgTGCTCTGGCTGAGCAGGATGAGATAGACGTCCTGCTGGAGGCTTTGCTCTCCCCCTGCTTCTCTGTCAGAGACGCTGCCCTCAGGgGCCTGTTGGAGATGGAGATGGCTCTGCCTACAGAAAGTACAGATGCCAATGGTCTGCGTGTTCTTCGCAGGCTGTGGGTGTCCAGGTttgatgtggaggaggagggcaggACCCTGGCTGAGAAgcTGTGGCAGGCTCTGTGTCTGGAGCTGGTCCCTGAGCTGTGCTCTCTGCTCATCGGAGATGTGACCCACCATGAGGAGGCTGTGCGTACTGCCGGGGCCGAGGCTCTGTCCAGTGCCATCAGCGAGTACCGCGACCAGTCCCCCGCTGTCCTGGGCCAGCTCAATGAGCTCTACCACCAGAAACTCTACAGACCTCCTCCTATCCTGGATGCTTTAGGACGAGTCATCTCTGAACAACCACCTGACCAGTGGGAAGCCAGGTGTGGCATCGCCCTGGCTCTGAACAAGCTGTGTCAGTATCTGGAAGAGCCCCAGGtcactcctctcttcctgttctttGTTCCTGATGCCCTGAATGACCGTCACCCTGAGGTGCGGCGCTGCATGCTGGATGCTGCCCTCTCCGCCCTCAACACACACGGAAAGgacaaTGTGAGCTCCCTGCTCCCCGTGTTCGAGGAGTTTCTGAAGGACGCCCCCCAGGACGCCAGCTACGACTCAGTCCGCCAGAGTGTGGTCATCCTAATGGGCTCTCTGGCCAAACATCTGGAAAAGAGTGACCCCAAGGTCAAACCCATTGTGGCCAAGCTCATTACAGCACTCTCCACACCCTCACAGCAGGTCCAGGAGTCTGTGGCTAGCTGCCTGCCCCCTCTGGTCCCTGCCATCAGGGAGGATGCTGGGGGGATGGTGCGGAAGCTGCTACAGCTGCTGTTGGAAAGTGACAAGTACGCTGAGAGGAAGGGCGCGGCCTACGGCCTGGCAGGCCTGGTCAAAGGCCTGGGAATCCTGGCCCTCAAACAGCAGGACATCATGAGTACCCTGACCGACGCCATCCAGGACAAGAAGAACTTCAGACGCAGAGAGGGTGCCCTGTTTGCCTTTGAGATGCTGTGCAACATGCTGGGGAAGCTGTTTGAGCCCTATGTGGTCCACGTGCTGCCCCACCTCCTGCTCTGCTTCGGGGATGGGAACCAGTACGTCCGAGAGGCGGCAGATGACTGTGCCAAGGCGGTGATGAGGAACCTGAGTGCCCACGGTGTGAAGCTGGTGCTGCCCTCCCTGCTGGTGGCTCTGGAGGAGGAGTCCTGGAGGACCAAAGCAGgTTCTGTGGAGCTCCTGGGTGCCATGGCATACTGTGCCCCTAAGCAGCTGTCCTCCTGCCTGCCCAGCATTGTGCCCAAGCTGACCGAGGTGCTGACTGACTCCCATGTCAAAGTGCAGAATGCCGGCCAACAGGCCTTACGACAGATCGGCTCTGTCATCCGCAACCCTGAGATCCTGGCCATAACCCCCATCCTGCTGGACGCCCTCACTGACCCCTCCCGTAAGACCCAGAACTGCCTGCAGACGCTGCTGGACACCAAGTTTGTCCACTTCATCGACGCCCCCTCCCTGGCCCTCATCATGCCCATCGTCCAGAGGGCCTTCCAGGACCGCTCCACTGACACTCGCAAGATGGCCGCTCAGATCATCGGCAACATGtactccctcactgaccagaagGACCTGTCCCCATACCTGCCCAGTGTCATTCCTGGACTCAAAGCCTCTCTGCTGGACCCTGTGCCTGAGgtgcGTACAGTGTCAGCCAAGGCCCTGGGTGCCATGGTGAAAGGCATGGGTGAGTCGTGCTTTGATGATCTGATGCCCTGGCTCATGGAGACCCTGGCATCTGAGCAGAGCTCTGTGGACCGCTCTGGAGCTGCCCAAGGTCTGGCTGAAGTGATGGCTGGGCTGGGCGTGGAGAAGCTGGACAAGCTGATGCCAGACGTGGTGCAGACGGCCAGCAAGGTGGACATCGCGTCCCACGTCCGCGACGGTTACATCATGATGTTTATCTACCTGCCCCTCACCTTCGGGGACAGGTTCACCCCCTACGTTGGCCCCATCATCCCCTGCATCCTCAAGGCTCTGGCAGATGAGAACGAGTATGTGAGAGACACTGCCCTGCGTGCCGGCCAGCGCATCATCAGCATGTACGCTGAGACGGCCATCGCCCTGCTGCTGCCTGAACTGGAACAGGGCCTGTTTGACGACCTCTGGAGGATTAGGTTTAGCTCCGTGCAGCTGCTGGGAGACCTACTGTTCCACATCTCTGGAGTCACAGGGAAGATGACCACAGAGACCGCCTCAGAGGACGACAACTTTGGCACAGCGCAGTCCAACAAGGCAATCATCGGAGCCCTGGGTGGAGAGAGGCGTAACCGGGTCCTGTCTGGCCTCTACATGGGCCGTTCAGACACCCAGCTGGTGGTGCGACAGGCCTCCCTCCACGTGTGGAAGATCGTGGTGTCCAACACTCCCCGCACCCTCCGGGAGATCCTGCCCACCCTCTTCACCCTGCTGCTGGGCTTCCTGGCCTCCGACTGCCCTGACAAGAGAACGATCGCTGCGAGGACACTTGGAGACCTGGTTCGTAAGCTGGGAGAGAAGATCCTCCCAGAGATCATTCCTATCCTGGAGGAGGGTCTGCGCTCAGACAAGAGTGATGAGAGGCAGGGTGTGTGCATCGGCCTCAGTGAGATCATGAAGTCCACCAGCAGGGATGCGGTGCTGATATTCTCTGAGTCCCTGGTCCCCACGGTGAGGAAGGCTCTGTGTGACCCCCTGGAGGAGGTTCGAGAGGCTGCAGCCAAGACCTTTGAGCAACTCCACGCCACCATCGGTCACCAGGCCCTGGATGacatcctgcctgccctgctCAAACAGCTGGATGATGAGGAGACTGCGGAGTTTGCTCTGGATGGTCTGAAACAGGTGATGGCAGTAAAGAGTCGCTCTGTGCTGCCCTACCTGGTGCCCAAGCTAACTGCTCCTCCAGTGAACACGCGTGTGCTGGCCTTCCTATCTGCCGTGGCTGGAGACGCTCTGACACGCCACCTTGGGGTCATCCTGCCCGCCCTCTACTCCTCTCTGAAAGACAAGCTGGGAACAGAGGAGGGGCAGCAGGAGCTGGCCAGCTGCCAGGCAGTGATCCTGTCTGTGGAGGATGAGGTGGGTCAGCGTATCATCATCGAGGACCTGCTGGAGGCCACCAGATCACCTGACGCTGGTCTCAGACAGGCTGCCGCCACCATCCTGAACGGATACTTCTCCCGCACCCGCCTGGACTACAGCGCCCACACCCGCAACCTGCTGTCAGGCCTCATCCGCCTGCTCAACGACTCCAACCCGGAGGTCCTGGTGCAGAGCTGGGACGCCATTAACTCCATCACCAAGAAACTGGACGCTGGCAGCCAGCTGGCTCTGATTGATGACCTGCACAGAGACATCCGGTCAGTGGCAGCAGACGTCAAGGGTCAGCATCTGCCTGGGTTCTGTCTGCCCAAGAAGgGTGTGACCTGCATCCTGCCAGTCCTGAGGGAGGGAGTGTTGACAGGCAGTCCTGAGCAGAAAGAGGAGGCGGCTAAGGCACTGGGAGGAGTCATCAAGCTGACATCCCCCGATGCTCTCCGACCATCTGTGGTCAACATTACTGGACCGCTCATCCGTATCCTGGGAGACCGCTTTGCCTGGAGTGTGAAGACCTCTCTACTAGAGACACTCACCCTGCTGCTGGCCAAGGTAGGCATAGCCCTGAAGCCCTTCCTGCCCCAGCTCCAGACCACCTTCCTAAAGGCTCTGCAGGACTCCAGCCGGGCGGTTAGACTGAGGGCCGCTGAGGCCCTGGGCCAGCTGGTCTCTATCCACAGCAAGGTGGACCCTCTATTTACCGAGCAGCTCTCTGCCATCAACAACGCTGAGGACTCCGGAGTGAGGGAGACCATGCTACAAGCCTTACGATTTGTCATCCAGGGAGCGGGTTCAAAGGTTGACCCAGCCATCAGGAAAAACATTACCACGACATTGCTGAGCATGCTGGGACATGATGAGgatgctACACGCATGTCCTCAGCAGGGTGTGTAGGAGAGCTGTGTGCCTTCCTGTCTGAAGAGGAGCTGAGAAGTGTGTTGCTTCAGCACGTCCTGGCTGACATATCAGGTGTGGACTGGATGGTGCGTCATGGTCGCAGTATGGCCCTGGCCATCGCAGTCAAGTCTGCGCCCGAGCAGCTGTGTGTGGAGGAGTACAGTTCAACTGTGATGGAGACCATCCTTGCCAATGCCACTGCAGACAGGATCCCCATAGCCACCAGTGGGATCAGAGCCATGGGCTACCTGATGAGACATCATCTCAGAACCGAGGGAGCAAGTGGCTCATCACAGCGCATTATCACACAGTTTGTCAAGTGTCTCCAGAACCAGTCCAGTGACATCAGGCTGGTGTCGGAGCGGGTGCTGTGGTGGGTGTTTAAGGACAAGGCCACGCCCTCCCTGGAGCCCGCCCTCATCAAGCCTCTGGTGAAGAGCCTGCTGGACAATACCAAGGACAAGAACACCAGCGTCAGAGCCCAGAGCGAACACACCATCGTCAGCCTGCTCCGACTGCGCCAGGGAGAGCAGACCATGCAGAGCGTTAGTGCCATCCTTGACTCCGCAAGTAATGACTTGCTGTCTGACTGTCACCGCCGCTCCCTGAGGAAGATCTCCAGCCTTCCAGACTCTAACGAAGAGATTGACGACACCATCCTCACGTGATGGGCAGGACTGAACACAGCTTGACAAATCCATACGGTTGCTCATGTACTCAGAAAAGACCTCCACAGCAATCAAGAAAAACTCTGTCATGTCTCACAATTGCATACATCTATGGAGagaaccctcacacacacatacatccccATTAACTCCATGTTATCCATGGACCAAGGAAAAGGTATGAATTTACTCACTTTCCttcataatcccccccccccccccccccttggacAATTATTTCATTTTTTCATGTTTTAGTGGCTCTAAACATACATTTAGAACATTTGTTTCATCTCACTAAGTGCAGTTAAATTTCCTGAGTGAGCTCACTGCATAAAGAAAGTAATTTGTGCCAATTCCtttgacattttaaatgtgtatTCAATGACCCTCTTATTTTATTGAATTTATTTCGAGCATCACTGATACTAGTATAACAAAGCAGCAATTACATTTCTCCCATTGCTTATACTCTGGGTTTTATACctctgctttgtgtgtgtggggaaCGCAACCTGTTACCTTTATGATAGTTGATATTCTAAACAATTATATGGttgtaaaaataaatcaaataaagacCTTGATTTGATAATG

Function

NR:

description
eIF-2-alpha kinase activator GCN1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979667.1 True 8672 mRNA 0.57 57 23411056 23446557

Neighbor

gene id symbol gene type direction distance location
LOC110525535 LOC106585482 coding downstream 361 23397024 ~ 23410695 (-)
LOC110525124 LOC106585475 coding downstream 95871 23223095 ~ 23315185 (-)
LOC110525529 ppp1cc coding downstream 346921 23061031 ~ 23064135 (-)
LOC110525530 LOC106585473 coding downstream 361257 23029762 ~ 23049799 (-)
anapc7 LOC106585471 coding downstream 412989 22992473 ~ 22998067 (-)
LOC110525537 pxn coding upstream 12983 23459540 ~ 23490066 (-)
LOC110525539 NA coding upstream 43977 23490534 ~ 23492812 (-)
LOC110525016 LOC106585485 coding upstream 48147 23494704 ~ 23497340 (-)
LOC110525017 LOC106585484 coding upstream 60816 23507373 ~ 23509516 (-)
si:ch73-138n13.1 LOC106585486 coding upstream 64053 23510610 ~ 23550153 (-)
G487017 NA non-coding downstream 14352 23396381 ~ 23396704 (-)
G487015 NA non-coding downstream 16524 23393898 ~ 23394532 (-)
G487014 NA non-coding downstream 17447 23392966 ~ 23393609 (-)
G487026 NA non-coding downstream 22496 23388011 ~ 23388560 (-)
G487025 NA non-coding downstream 23194 23387298 ~ 23387862 (-)
G487474 NA non-coding upstream 117250 23563807 ~ 23564491 (-)
G487489 NA non-coding upstream 118375 23564932 ~ 23565171 (-)
G487491 NA non-coding upstream 123493 23570050 ~ 23570275 (-)
G487493 NA non-coding upstream 125932 23572489 ~ 23572730 (-)
G487495 NA non-coding upstream 127830 23574387 ~ 23574635 (-)
G487016 NA other downstream 18994 23390017 ~ 23392062 (-)
G487022 bicdl1 other downstream 25149 23385534 ~ 23385907 (-)
G486953 NA other downstream 157695 23251286 ~ 23258106 (-)
G486716 NA other downstream 570490 22837653 ~ 22840566 (-)
G485877 NA other downstream 1130030 22280726 ~ 22281026 (-)
LOC110525180 hps4 other upstream 136479 23582127 ~ 23587892 (-)
LOC110525552 LOC106585495 other upstream 267318 23713875 ~ 23717830 (-)
G488386 NA other upstream 906976 24353533 ~ 24353823 (-)
LOC110525585 LOC106585524 other upstream 1214340 24655788 ~ 24715090 (-)
G489038 NA other upstream 1659648 25106205 ~ 25106570 (-)

Expression


Co-expression Network