LOC110525017 (LOC106585484)


Basic Information

Item Value
gene id LOC110525017
gene name LOC106585484
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23507373 ~ 23509516 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604978.2
gtttctcttttctctgtctctctcctgatTGTGCTCCTTAGAGAGGAGTAACCAGTGGACCAGGAGGATGTCGGAGCAGCAGAGCGCCCCTGAGCAAATGGCTGCAGGGAAGAGCCAGGGTGGAGCAGGAGCCACTTACAAGGTGGTGCTGTTTGAGTTTGAGAATTTCCAGGGCCGCAAGGCTGAGTTTTCTACTGAGTGTAAAGATGTTTCAGAGAAGGGCCTGGAGAAGGTGGGCTCTATGCTGGTTGAGTCTGGCCCaTGGGTGGGGTATGACCGCCAGGGGTTTGCAGGTGAGCAGTTTGTTCTGGAGAAAGGCGAGTATCCACGCTGGGACACCTGGACCAACAGCCAGTACAGCTACTCCTTCTGGTCCATGCGGCCTCTCAAAGTGGATAGTGCCGAACACAAGCTCCATCTGTTTGAGAGCCCAGGCTTCACTGGTAGAAAGATGGAgattgttgatgatgatgttccCAGTTTGTGGGGACATGGTTTCCAAGATCGCGTAGCGAGTGTCAAGGCCCTCAACGGAACATGGGTCGGCTACATGTACCCCGGCTACAGGGGGTGCCAGTACGTGTTTGAGTGTGGAGACTTCAAGCACTGGAACGACTGGGATGCCCCTGCACCTCAGATCCAGTCTGTCCGACGTGTGCGAGACATGCAGTGGCACAAGAGGGGGTGTTTCACCGTCCCTGCTCCTTCCCCTGATCCAGCTCCTGACCCCGCTCCTGCCCCAGCACCCGCACCCCCTGCACCCCCTGCCGCCTCCGGGGCCAGCTGAAGAGGATTCTAAACAACTTCCCCCATCTTCCATGAGCCTCTTTCTACCATCAGTGCTTGCCCTCTGCCTCACCCTAACCATGGCAAATGCTGCTCCTGCTTAGTGAGGAGAAGTGCTATATATGTTTcagtggcaaataaagt

Function

NR:

description
beta-crystallin B3-like

GO: NA

KEGG:

id description
K23482 CRYB; beta-crystallin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604978.2 True 930 mRNA 0.55 5 23507373 23509516

Neighbor

gene id symbol gene type direction distance location
LOC110525016 LOC106585485 coding downstream 10033 23494704 ~ 23497340 (-)
LOC110525539 NA coding downstream 14561 23490534 ~ 23492812 (-)
LOC110525537 pxn coding downstream 17307 23459540 ~ 23490066 (-)
LOC110525536 LOC106585483 coding downstream 60816 23411056 ~ 23446557 (-)
LOC110525535 LOC106585482 coding downstream 96678 23397024 ~ 23410695 (-)
si:ch73-138n13.1 LOC106585486 coding upstream 1094 23510610 ~ 23550153 (-)
LOC110525541 rnf10 coding upstream 40775 23550291 ~ 23560802 (-)
LOC110525180 hps4 coding upstream 72611 23582127 ~ 23587892 (-)
LOC110525543 LOC106585487 coding upstream 78714 23588230 ~ 23590352 (-)
pla2g1b LOC106585490 coding upstream 96833 23606349 ~ 23607826 (-)
G487037 NA non-coding downstream 74994 23430761 ~ 23432379 (-)
G487017 NA non-coding downstream 110669 23396381 ~ 23396704 (-)
G487015 NA non-coding downstream 112841 23393898 ~ 23394532 (-)
G487014 NA non-coding downstream 113764 23392966 ~ 23393609 (-)
G487026 NA non-coding downstream 118813 23388011 ~ 23388560 (-)
G487474 NA non-coding upstream 54291 23563807 ~ 23564491 (-)
G487489 NA non-coding upstream 55416 23564932 ~ 23565171 (-)
G487491 NA non-coding upstream 60534 23570050 ~ 23570275 (-)
G487493 NA non-coding upstream 62973 23572489 ~ 23572730 (-)
G487495 NA non-coding upstream 64871 23574387 ~ 23574635 (-)
G487016 NA other downstream 115311 23390017 ~ 23392062 (-)
G487022 bicdl1 other downstream 121466 23385534 ~ 23385907 (-)
G486953 NA other downstream 254012 23251286 ~ 23258106 (-)
G486716 NA other downstream 666807 22837653 ~ 22840566 (-)
G485877 NA other downstream 1226347 22280726 ~ 22281026 (-)
LOC110525552 LOC106585495 other upstream 204359 23713875 ~ 23717830 (-)
G488386 NA other upstream 844017 24353533 ~ 24353823 (-)
LOC110525585 LOC106585524 other upstream 1151381 24655788 ~ 24715090 (-)
G489038 NA other upstream 1596689 25106205 ~ 25106570 (-)

Expression


Co-expression Network