LOC110525298 (LOC106585338)


Basic Information

Item Value
gene id LOC110525298
gene name LOC106585338
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23925846 ~ 23941878 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981737.1
ATGGAAATCAACCATCAGGTAAATCACGGAGAAAAACATCCTCAGCACTGGAGGAGCTGCAAGTTGATCGTAGACCCTGCGTTGAAGAATGGGTTTTATAAAGTGTATCGTTACGATGGGCATCATTTCAACATGCCAGACTTAGGGGCATTTCCTGTGGATACTGTCCGGGATCCCAGAATCTGTCGTCTTTGGACCAAATTCAGAGACACTGACCTGCTGGTCCCCAAATTTAAGATTGATGAATACTATGTCGGCCCACCCAAGGAAGTGACATTTGCCAGGTTAAATGACAACGTAAGGGAGGGTTTCTTGACTGACATGTGCATAAAGTACGGACAGATTGAGGAAGTGGAAATCTTGTATAATCCTAAAAACAAGAAGCATTTAGGAATTGCTAAAGTCATCTTCGACACAGTCAAGGCTGCAAAGGACACTGTGGAACACCTTCATGACACCTCTGTCATGGGGAACATTATCCACGTGGAACTTGATCCAAAGGGTAAAAACAGAATGCGGTACTTCCATCTTCTTGTTAGTGGACTCTACACCCCTTCGACATTGCCACTGGGCAGTGATGAGCACACCCTCCAACGCCTAACTGAGAGATTGCAGGACAGCAAACCTCTGCAAAAACTGACTGATGGGAGTTCATCATTGACAAGGTCTATTTCCAGTCCCACCAGCGTGGCTACACCTCTCTCCCTAGACACAGCCTACTCCAGTATCTGGCAGGACACACCGGGCAGCTTTGGGCAGACACCCCTCTCTCAGGGCACCCCACATACCCCCTGCCTGTCTGGGACCCCCCTCTCTCAGGACTCTTGCTACTCTAGCCAGCACACCACCCCAGTCCACCAAGTCACTCAGGGTGAACACTCCTCATACGGTGCTCACAGACGCTTGAGGCGCGATGTCTGCTATCGTCAACCAGGGAGACCTTATATGAGATCCCACCATCAGAGCTCAGAGCTGAGCTCTCTCCTCAAACACCTCCAACCTCACCGTCCTCTCCAGCCCCAAACCCAGGTTGCTAGCGGCAGCTACAAATCTTCCGTCTTCTGGTATCAGAACCGCCTGCCCTCTGCTGATGATAACCCTGCCACAgagcctcccctctcccttcctgaaCAGGAGTCCTGGAGGGTGCCCTCTCTACCTCCTGCCTCTGAGGCTTTCCCTCTGAGCAACAGCTCTGCCAGTGCCACAAGTATGAACGTGGTACCTCTGAGAGAGAGACCCCAGTCTCCCCCTTCTGGACCCGATGCGGGCCTTATAGAACCGCCCCCTTCCCCTCCCAATAACTCTCCTGGAAGACTCATCCCAGAGGCAGAGAGCCACAGCCTGGACTCACGCATTGAGATGCTTCTCAGCAAGACTCAGAGTTCCTGCCTCCCTCTACATGGTGAAAGGGGTTTGGATGCTGAAGTGCACTCTCAGGACAGCCCTGTTTCCCCATTCTCCCCTGTCTCGATGTACTCTCCTGAGTCTGACCACACCCCAGCCCGTAGTGGATCTCCTGTGAACTGTACCCACCCCACCACCAGTGATGGTCTGGAGGATGTCAGTCCCACTTCCCTCCCTGAGTGGGAAGGAGACGAGTCCCTTCCAGGGATGCCTTCTCTAACATGGACCTCACAGCCCCCCTGGCCTCCTGGgacgctctctctcactcaaagGGAGAGAATTTACCCATATCCCTTGAATACGCTGCACACTGTGCATATGGACAAGGTGAATGGTCTGCCTGGGTGTGGCAGTGTGCCAGTGTCTTTTACTGGGCAACCCTGGCCCCTGCCTCCCTTCATGCCCACCTTCAACCCCTCTGTGcccccgccaggctacctgcctctgcAGGAGGACCCTCATAAGGCCACAGTGGAAAAGGTGCTGGCTGTCATTACGGAGGAGCTTAAGTCCATCGTGAAGAGAGACATCAACCGTAAAATGGTTGAGGGGGTAGCCTTCAGGGCGTTTGATGAGTGGTGGGATGGCCAGGAGCAGAAAGCTAAGATTGCTGTAAGTCTTGTGAATGCCAGAGAGGGTAGAGTGGAGGTGAGGGCCAAACCAAGAGACTCCCTAAGACAGAACATTGGCCCGCGTGGTGCCACCAACCTGCCTTCCTTCAAGGTAAAGAAGAAAGAGTCCGACGAATCGACTGCCTCAGAGGACCCCAAAAGAAAGTGTCCCTACACACCTGTTAATGATGCACATGAGAGTGCTGAGCTGGAGAGTAATATAACGAATCACACATTGGACAGGTCCCCAAAAACTGGAACTATTCCAGCTGTGAGGCGAAGACATGCAAGGCCACTGGAGCTGGACagtgagggggaagaggagagcagagagaaagagggggagccaACAAGAGACAAAGAGGAGGATACTGTGGAAGCAGACAAGGTTCCCCAACGCCAGCAGAGGGATGAGAATGATGACAGTGAACAAAAAGAGGAAGAAGTGGACgaggatgaagatgatgatgaagatgatgatgaagatgtgTTGCTTAATAAATCTACTTCAATAAATCTGTTACACATACTGAAATGCACATTATTGTTTTCTCATTTACCAGAAGTTGCCAGGGTAAGCCTCTCAGAGGTAGAGTCTTACTCCTCAGAAGACAGTGAATACCTCTCAGAGTCTGACTCCTCTGACTCCTCCTTTGAGGAAAGTGAAGACTTCTCAGACTATGACTCCAGTTCTGAccaggagacagaggaagaggaggagacagatggagatgCTGATGAGGTCAACAGGGAGGTAGAGTGTGTGGTGTTGTCATCAGATGAGGAGGAGATGGATCTGGAGCCCCCGGCTACACCCTCAGCCCCTCTTACCCCAGGCACAGAGCTGGACCTACTGGATGGGTCAGAGCCGGTCCTGAGGGATCAGCCTTGGGAGGAGAAGCACTCAGTCTGTCTGACTCGAGATGTCTTTGGGCGCACCAGCTGCACAAGCCGACCTGACCCAGGGATGGAGCTCCTGTCCAGTGAGCACCACCATGATCTCCAGGCCCCCTCACCCATAGGCCTGCCAGGTAGATCAGTGGTGGAGCCTGATTTTGCAGTGGAGATAGATAGCCCTGAATGGAGCGTTGAGTCACCAGATAACGTGGAGAACCTCCGGCCTCTCACCCCCACTGGCTCTCTGGGGGACAGCGACTCAGACCTACTGTTCAAGAGCAAACCAACCCCCCCTGCTGTGGAGGAGGTGGAACTGCCACACACTCCTGGTCGGGGAGCAGAGGCCCTCCTTGAGAGTGAGGAGGACTCTATGGAccacctcctctccttttcccgcACAGACAGTGAGCCTTTGTCCCAGAGCCGCCCCACTCATCCCCCTGCCTTAGCCTCGTACCCAACATACGAGGACATGCCCAAAACACCAGGGACAGATGAGAGGGGTCTATGGAATCCCCTTACCCCCTGGAGGGTGCCAGTGACACCGGGGAGAGATTCAGGCCTCACAGAGGGAGGCCCGGGGTTTAGTCCCACTCCCTGTAACCctttcccccttccctccctgtgCACCGGCCTTTACATCAGGACCCCACAAACTCCTGGGAGGGACTTCATCCCAACCAAGAGAACACACAGGAATACCACCGTTATGTTGGCCTCTTCACAGAGGACAAATGGTGCTCCTTTATCCCGTGATGAAATGCTTACAGACTCACCTGTTTTAGCTTCTTCTCCTAGCAGCCTGTCTGAGTCATCAGCAGAGACTTCTGGCCATGGGTATGTGTGGCTTAATCCTAATCCTGGGTCCCAGAGGAAGTTACCCCTGCAGGGCCTGGAGAACTGGTCAGGGCTGGCGGATgtggagaaccagagagagatggaggagtgttCCTGGAGGAGGGTACAACCAAGAATGAGGCGGAAGATGAGGCGGAAGATGAGGCGATGGCAAAGGATGAGGTCAGTGCAGAGAGCCATGCCCTCTGTCTTCTCGGCCAGTCCCTGTCGTCGGTCACGAAGTGAGGAGATGACTGTCCTCCACAGTGTCTGGAAGGAGGGCCTGGATGAGGAGGATTCCAAGCTGCTGCAGGTCACCTATGACAGGCTGCTACAGCAGGACAATGGCTTCAGCTGGCTCAGTGACACTCTATGGGTCCCCCACCCTCATATCCTTTACTACAGAGCTAAGAGGAAGGAGCTCAATGATTGGATGTGGGACCATGTGACAGGATCTGCCCGCAGCGAGGGCTTTTACAAAATCAGCAAGAATGACAAAATAAAATACCTCAACAGCACGTGTTTGAATACAGACCAGCCCTCTGCAGACACCCAGGGGGTAGGTCTTTCAGGCCAGCCGCACCCTTCCCTGCGGTCTGGGTCTGAGTTCAGGTCTGAACAACGCCGTCTGCTCTCCTCCTTCAGCTGTGACAGTGACCTGCTCAGGTTTAACCAGCTTAAGTTCCGCAAGAAGAGGATTCGTTTCTGCCGCAGTCACATCCATGACTGGGGCCTGTTTGCCCTGGAGCCCATAGCAGCAGATGAGATGGTGATTGAGTATGTGGGCCAGTGCATCAGACAGGTGATTGCAGATATGCGGGAGAAGCGCTATGAAGATGAGGGGATTGGGAGCAGCTACCTGTTCCGGGTCGATCAGGATACCATCATCGATGCCACTAAATATGGGAACTTGGCCAGATTTATCAACCACAGCTGCAATCCTAATTGCTATGCAAAAATAATCACAGTGAAATCCCAGAAGAAGATAGTGATCTACTCCCGGCAGTCCATCAGTGTCAATGAGGAGATCACGTATGATTACAAGTTCCCCATCGAGGATGAGAAGATTCCCTGTCTGTGTGGAGCAGAGAACTGCCAGGGCTCCCTCAACTGAACTCTGAACCCTTGTCTCCATCCCACCTCTCAAGCACTGTCCTGCTGCCTTACAGTTCCTGACATAGGAATAATAAGACCTCCCTTTCCAACCAAGGTTCATGAAGAGTGGAGCAAGCTGAAGATTCAAAGATGTTCAGCAACTCTTGGGCAGACAATTGAagttcctttaaaaaaaagttatttattgTTAAAACAGTTTGTGGAAAAAACACACACCGTGGGCGCTGTTCTCCTCTCCCTTAAAATGACTACACAGGATGGGGTATGATGTTGCCTTGCCCTGTAGAGGTGATTTCTTGTGCAAATGTGTACATGATGAGTTAAATGTTTTCATTCATGAGAGCTAATGAAGATGTATTCAGCTTGTGTCAAGCATTTTATTAAGTTGTTTTGGTAATTGTTCTCTCAGGTTGGTTGTTTTAGGCAGAGTGGTCACTATATTTATAAATCATTTGGCTCATTATGTCTTTTTCACAAgttctctctcgcacacacaaacactgtgaaTGAGGAAGGAGTCACAATGCAGTTGTATTTTTATTACATGCACTAAAAAAGTTTACGAAAGCAATTGGGGGAATCAAAATGAACAAGTAAAGTGTAAAAAAGACTTTTAGTTCATGGAAAGGATACAATAAACTGACATGTTGTCATTGTGCATCTTATTGAGTCATGTTGTGGTTTATTACTTCCTTCCActtaaatatgatttttttttcagAAGTAAGGCAAATAAGACAATGTGAAGCTAAGACAGAGTTAATGTCATACTTAAAAATTGCTTGTTAATACCAGAATTGATAACATAGCTGGCTCAAATCTAATGATGATGTCTGCTCTTTTTCTGTTGCTTTGGATTGTACATCAACATATTTGATCATACTTTGATTGTCACAAACATGTGTTGTTTTCTAAGCCAAAAACAAATACACAGCCTTCGGAAAGTtgtcacactccttgactttttccatattattttgcattacagcctgaatttattacattgagattttgtgtcaccggccacacacaataccccataatgtcaaagtggaattatgtttttagaaatgtttacaaatgtattaaaaatgtaaagctgaaatgtcttgagtcgatAAGTATTTAACCCATttgtcatggcaagcctaaatatgtccAGGAGTAGAAATTTGCTTAAGAAGTCGCATAGTAAGTTGTATGGCCTCAGtctttgtgcaataatagtgtttaactttcaaatgactacctcgtctctcacatacagataattgtaaggttcctcagtcgagcagtgaatttcaaacacagattcaaccaccagggaggttttccaatgtgtcgcaaagaagggcaactattggtagatgggtaaaaacaaaacaaaaaaaagcagacattgaatatccctttgagcatggtgaagttattaattac
>TU553795
CTCATCCCAGAGGCAGAGAGCCACAGCCTGGACTCACGCATTGAGATGCTTCTCAGCAAGACTCAGAGTTCCTGCCTCCCTCTACATGGTGAAAGGGGTTTGGATGCTGAAGTGCACTCTCAGGACAGCCCTGTTTCCCCATTCTCCCCTGTCTCGATGTACTCTCCTGAGTCTGACCACACCCCAGCCCGTAGTGGATCTCCTGTGAACTGTACCCACCCC

Function

NR:

description
histone-lysine N-methyltransferase SETD1B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981737.1 False 6305 mRNA 0.49 17 23925846 23941878
TU553795 True 222 lncRNA 0.56 1 23931744 23931965

Neighbor

gene id symbol gene type direction distance location
LOC110525563 LOC106585507 coding upstream 11549 23911741 ~ 23914297 (+)
LOC110525560 LOC106585504 coding upstream 40878 23857854 ~ 23884968 (+)
LOC110525559 LOC106585501 coding upstream 78505 23841475 ~ 23847341 (+)
ggt5a LOC106585500 coding upstream 124695 23791444 ~ 23801151 (+)
LOC110525549 hnf1a coding upstream 222555 23677474 ~ 23703291 (+)
LOC110525570 LOC106585512 coding downstream 100151 24042029 ~ 24042359 (+)
LOC110525569 LOC106585512 coding downstream 100642 24042520 ~ 24046202 (+)
LOC110525573 LOC106585515 coding downstream 138413 24080291 ~ 24122599 (+)
rflna LOC106585519 coding downstream 359858 24301736 ~ 24314535 (+)
stx2b LOC106585525 coding downstream 774468 24716346 ~ 24724878 (+)
G487273 NA non-coding upstream 10207 23915458 ~ 23915639 (+)
G487257 LOC106585505 non-coding upstream 31584 23893201 ~ 23894262 (+)
G487255 LOC106585505 non-coding upstream 34667 23889587 ~ 23891179 (+)
G487249 NA non-coding upstream 48822 23876818 ~ 23877024 (+)
G487248 NA non-coding upstream 49395 23876128 ~ 23876451 (+)
G487298 NA non-coding downstream 16103 23957981 ~ 23958251 (+)
G487307 NA non-coding downstream 31401 23973279 ~ 23973525 (+)
G487330 NA non-coding downstream 71532 24013410 ~ 24013807 (+)
G487331 NA non-coding downstream 74334 24016212 ~ 24016774 (+)
G487334 NA non-coding downstream 77663 24019541 ~ 24022100 (+)
G487146 LOC106585492 other upstream 257919 23653120 ~ 23667927 (+)
G487078 LOC106585486 other upstream 394047 23528740 ~ 23531799 (+)
LOC110525518 LOC106585474 other upstream 733929 23079630 ~ 23197514 (+)
G486127 NA other upstream 1251394 22674242 ~ 22674452 (+)
G488049 NA other downstream 638083 24579961 ~ 24586313 (+)
G488078 NA other downstream 689091 24630969 ~ 24631396 (+)
G488258 NA other downstream 996891 24938769 ~ 24939272 (+)
si:dkey-191c17.2 LOC106585342 other downstream 1696983 25638816 ~ 25641178 (+)
G489447 NA other downstream 1741808 25683686 ~ 25684311 (+)

Expression


Co-expression Network