LOC110525567 (LOC106585510)


Basic Information

Item Value
gene id LOC110525567
gene name LOC106585510
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24032069 ~ 24041920 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605783.2
AAATACCTCCATTCCAGGCAGGTCAACTGACGAACAACGGTCCTATTTGGAAATAGTTTTGTGCAATTAAATCAGTTTCTAGACAAAGCTATAGTACCACAACAAGACTTGTTACTTAGTAGTGTAATTGTGAAGAGAACGAACCTCACTTTTTACGTTTTAACAGATAAGCCAAGCAAGGAATTAGCGCAGCCATGCCGCCTGGGCCTGTACAAATGGTTCAACTGGAGCCCAACAACAGGGCAGATGAGTCAACAGAGGAAACCCCAGCAACAAAACCCATAGTTGGGATCATCTATCCACCTCCTGAGGTCCGAAACATCGTCGACAAGACTGCCAGTTTTGTAGCCAGGAATGGACCAGAGTTCGAGGCAAGGATCCGTCAGAATGAGATCAACAACCCAAAGTTTAACTTCCTGAACCCTAACGACCCATACCATGCTTACTACCGCCACAAAGTCAATGAATTCAAGGAGGGCAAGGGCCAGGAGCCGTCTGCGGCCGTACCAAAGGTCATGCAGCAGCAGGCCCTGCAGAACTCACAGCAGCTTCCTCAAAAGGTGCAGGCTCAAGTGATTCATGAGACAGTGGTGCCAAAGGAGCCTCCACCTGAGTTTGAGTTCATTGCTGACCCTCCTTCAATCTCAGCATTCGACCTGGATGTTGTCAAGCTGACCGCCCAGTTTGTTGCTCGCAACGGGCGCCAGTTCCTCACACAGCTCATGCAGAAAGAACAGCGAAACTACCAGTTTGACTTCCTGCGACCTCAACACAGCCTCTTCAACTACTTCACCAAGCTGGTGGAGCAGTACACTAAGATTCTGATCCCTCCCAAGGGACTTCTGATAAAGCTGAAAAGAGAGTCTGAGAACCCCAGGGAGGTGCTGGACCAGGTGAGGTACCGTGTTGAATGGGCGAAGTTCCAGGAACGTGAaaggaagaaggaggaggaggagcgggagAAAGAACGTGTGTCCTACGCCCAAATTGACTGGCATGACTTTGTAGTGGTGGAGACCGTGGACTTTCAGCCTAATGAACAAGGCCACTTCCCCCCACCCACCACACCTGAGGAGCTGGGAGCTCGCATCCTGACCCAGGAGCGTTATGACAAGtttggagagagtgaggaggtggagatggaggttgaaagtgaggatgaggaggacgaTGAGCGGGAGGAGCGGGATGATGGGCGTCCCACACAGCCTGATCAGGACACACAGCTGCAAGACATGGATGAGGGTTCTGATGATGAGGAAGATGGCAAGGCACCATTGCCCCCAGACAACCCCATGCCACCCCCACTGCCCCCTACTCCAGACCAGGTCATTATCCGCAAGGACTATGACCCCAAAGCCTCCAAGCCACAGCCTCCAGCCAAGACTCTGGATGAGTACCTCATCTCTCCCATCACGGGTGAGAGGATCCAAGCCAGTAAGATGCAGGAGCACATGCGCATTGGGCTACTGGATCCCCGCTGGCTGGAGCAGAGGGACCGGGGCATCAGAGAGAGGCAAATCGAGGACGAGGTTTACGCCCCTGGCATGGACATTGAGAGCAGCCTGAAACAGTTGGCTGAGAGGCGTACTGATATCTTTGGCGTGGAGGAGACAGCCATCGGTAAGAAGATTGGAGAAGAGGAGATCCAGAAGCCTGAGGAGAAGGTGACCTGGGATGGGCACTCTGGCAGCATGGCACGTACTCAGCAAGCAGCACAGGCCAACATCACCCTACAGGAGCAGATTGAGGCCATTCACAAGGCCAAGGGACTGGTGCAGGAGGATGAAAGCAAAGAGAAGATTGGACCGAGCAAGCCTGAGCTTTACCATCATCATCAATCACCCCTCATCTCCTCTGCCCCCCTTctgcccaaacccagccctccaATGAACACGATGGCTCGGGCCCCTCCTTCCATGCTGCCCCCTGTACGCACCACTCTCCTGTCAGCTGTGCCTGTGATTCCACGGCCCCCCATGGCCCCTGTGCAGATGCGCCTGGCCCCAGGGCAGGTTCTAACACCCATGCCTCCCATGATGCATGCTCCCCGCATCAACGTGGTACCCATGCCCCAACCACCTCACATGATGGCCCCCAGACCACCCCCCATGGTGGTACCAACTTCATTTGTCCCTGCCCCTCCTGTCCCGCAGCCCCCCCGCCCTGACCCTCAGCCACCTTCCCACCCACCCCCACGCCATGATGATGAGCCTGCCACCAAGAAGATGAAGACAGAGGACAACCTTATACCAGAGGAGGATTTCCTCCGCATATACAAGgGTTCGGTGTCGGTCAAAGTACAAGTTCCCAACATGCAGGACAAGACGGAATGGAAGCTAAGTGGACAAGCGCTCAACTTCACTGTCCCACTCacagatcagGTATCTGTTATTAAAGTCAAAATCCATGAAGCCACTGGCATGCCAGCTGGAAAACAAAAGCTACAGTATGAGGGAATTTTCATCAAAGATTCCAACTCGCTGGCCTACTACAACATGAACAACGGTTCAGTCATACACCTGGcactgaaggagagaggtgggagaaagaAGTGAACATCCCCCCAACAGGTTTCTCTGCCATACACAGCCAGTTTGCGACATTTTGTAATTTACCCCCAAGTAATTATTATAATGTCAGAAAAATGGGGGTAAATGAGCAACTTTACCAGAGCAGCTCTTTCAAATGATTTATGTCCTTTGTTGGTCATACCAATTATAAAGAATGCTTGAGGCGTAGTCTATACATAACCTATAATTAGTTTTGGTTTCGTATTTTAAGCCTTGATTCTTTTCTAAATGTTAATTGTATTATTTAAGGGGATTGTATGCATGCAGGTGGTTTCTGTCCAGATTTTCCAGCCCATGTCAGTCCATCAAATAAAGTAATAAAATGTCACCATTA
>XM_021605784.2
AAATACCTCCATTCCAGGCAGGTCAACTGACGAACAACGGTCCTATTTGGAAATAGTTTTGTGCAATTAAATCAGTTTCTAGACAAAGCTATAGTACCACAACAAGACTTGTTACTTAGTAGTGTAATTGTGAAGAGAACGAACCTCACTTTTTACGTTTTAACAGATAAGCCAAGCAAGGAATTAGCGCAGCCATGCCGCCTGGGCCTGTACAAATGGTTCAACTGGAGCCCAACAACAGGGCAGATGAGTCAACAGAGGAAACCCCAGCAACAAAACCCATAGTTGGGATCATCTATCCACCTCCTGAGGTCCGAAACATCGTCGACAAGACTGCCAGTTTTGTAGCCAGGAATGGACCAGAGTTCGAGGCAAGGATCCGTCAGAATGAGATCAACAACCCAAAGTTTAACTTCCTGAACCCTAACGACCCATACCATGCTTACTACCGCCACAAAGTCAATGAATTCAAGGAGGGCAAGGGCCAGGAGCCGTCTGCGGCCGTACCAAAGGTCATGCAGCAGCAGGCCCTGCAGAACTCACAGCAGCTTCCTCAAAAGGCTCAAGTGATTCATGAGACAGTGGTGCCAAAGGAGCCTCCACCTGAGTTTGAGTTCATTGCTGACCCTCCTTCAATCTCAGCATTCGACCTGGATGTTGTCAAGCTGACCGCCCAGTTTGTTGCTCGCAACGGGCGCCAGTTCCTCACACAGCTCATGCAGAAAGAACAGCGAAACTACCAGTTTGACTTCCTGCGACCTCAACACAGCCTCTTCAACTACTTCACCAAGCTGGTGGAGCAGTACACTAAGATTCTGATCCCTCCCAAGGGACTTCTGATAAAGCTGAAAAGAGAGTCTGAGAACCCCAGGGAGGTGCTGGACCAGGTGAGGTACCGTGTTGAATGGGCGAAGTTCCAGGAACGTGAaaggaagaaggaggaggaggagcgggagAAAGAACGTGTGTCCTACGCCCAAATTGACTGGCATGACTTTGTAGTGGTGGAGACCGTGGACTTTCAGCCTAATGAACAAGGCCACTTCCCCCCACCCACCACACCTGAGGAGCTGGGAGCTCGCATCCTGACCCAGGAGCGTTATGACAAGtttggagagagtgaggaggtggagatggaggttgaaagtgaggatgaggaggacgaTGAGCGGGAGGAGCGGGATGATGGGCGTCCCACACAGCCTGATCAGGACACACAGCTGCAAGACATGGATGAGGGTTCTGATGATGAGGAAGATGGCAAGGCACCATTGCCCCCAGACAACCCCATGCCACCCCCACTGCCCCCTACTCCAGACCAGGTCATTATCCGCAAGGACTATGACCCCAAAGCCTCCAAGCCACAGCCTCCAGCCAAGACTCTGGATGAGTACCTCATCTCTCCCATCACGGGTGAGAGGATCCAAGCCAGTAAGATGCAGGAGCACATGCGCATTGGGCTACTGGATCCCCGCTGGCTGGAGCAGAGGGACCGGGGCATCAGAGAGAGGCAAATCGAGGACGAGGTTTACGCCCCTGGCATGGACATTGAGAGCAGCCTGAAACAGTTGGCTGAGAGGCGTACTGATATCTTTGGCGTGGAGGAGACAGCCATCGGTAAGAAGATTGGAGAAGAGGAGATCCAGAAGCCTGAGGAGAAGGTGACCTGGGATGGGCACTCTGGCAGCATGGCACGTACTCAGCAAGCAGCACAGGCCAACATCACCCTACAGGAGCAGATTGAGGCCATTCACAAGGCCAAGGGACTGGTGCAGGAGGATGAAAGCAAAGAGAAGATTGGACCGAGCAAGCCTGAGCTTTACCATCATCATCAATCACCCCTCATCTCCTCTGCCCCCCTTctgcccaaacccagccctccaATGAACACGATGGCTCGGGCCCCTCCTTCCATGCTGCCCCCTGTACGCACCACTCTCCTGTCAGCTGTGCCTGTGATTCCACGGCCCCCCATGGCCCCTGTGCAGATGCGCCTGGCCCCAGGGCAGGTTCTAACACCCATGCCTCCCATGATGCATGCTCCCCGCATCAACGTGGTACCCATGCCCCAACCACCTCACATGATGGCCCCCAGACCACCCCCCATGGTGGTACCAACTTCATTTGTCCCTGCCCCTCCTGTCCCGCAGCCCCCCCGCCCTGACCCTCAGCCACCTTCCCACCCACCCCCACGCCATGATGATGAGCCTGCCACCAAGAAGATGAAGACAGAGGACAACCTTATACCAGAGGAGGATTTCCTCCGCATATACAAGgGTTCGGTGTCGGTCAAAGTACAAGTTCCCAACATGCAGGACAAGACGGAATGGAAGCTAAGTGGACAAGCGCTCAACTTCACTGTCCCACTCacagatcagGTATCTGTTATTAAAGTCAAAATCCATGAAGCCACTGGCATGCCAGCTGGAAAACAAAAGCTACAGTATGAGGGAATTTTCATCAAAGATTCCAACTCGCTGGCCTACTACAACATGAACAACGGTTCAGTCATACACCTGGcactgaaggagagaggtgggagaaagaAGTGAACATCCCCCCAACAGGTTTCTCTGCCATACACAGCCAGTTTGCGACATTTTGTAATTTACCCCCAAGTAATTATTATAATGTCAGAAAAATGGGGGTAAATGAGCAACTTTACCAGAGCAGCTCTTTCAAATGATTTATGTCCTTTGTTGGTCATACCAATTATAAAGAATGCTTGAGGCGTAGTCTATACATAACCTATAATTAGTTTTGGTTTCGTATTTTAAGCCTTGATTCTTTTCTAAATGTTAATTGTATTATTTAAGGGGATTGTATGCATGCAGGTGGTTTCTGTCCAGATTTTCCAGCCCATGTCAGTCCATCAAATAAAGTAATAAAATGTCACCATTA

Function

NR:

description
splicing factor 3A subunit 1-like isoform X2

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12825 SF3A1, SAP114; splicing factor 3A subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605783.2 False 2907 mRNA 0.51 15 24032069 24041920
XM_021605784.2 True 2901 mRNA 0.51 15 24032069 24041920

Neighbor

gene id symbol gene type direction distance location
LOC110525568 LOC106585513 coding downstream 70 24024546 ~ 24031999 (-)
LOC110525566 apja coding downstream 59796 23970088 ~ 23972273 (-)
LOC110525565 LOC106585509 coding downstream 83566 23943886 ~ 23948503 (-)
LOC110525564 NA coding downstream 114005 23915796 ~ 23918064 (-)
LOC110525561 LOC106585505 coding downstream 120330 23888654 ~ 23911739 (-)
LOC110525572 LOC106585514 coding upstream 17991 24059911 ~ 24071705 (-)
LOC110525317 dgcr6 coding upstream 30694 24072614 ~ 24079048 (-)
dtx1 LOC106585516 coding upstream 87480 24129400 ~ 24184369 (-)
ccdc92 LOC106585518 coding upstream 169224 24211144 ~ 24224260 (-)
ncor2 LOC106585520 coding upstream 275992 24317912 ~ 24504123 (-)
G487662 NA non-coding downstream 8969 24019572 ~ 24023100 (-)
G487708 NA non-coding downstream 14043 24017745 ~ 24018026 (-)
G487681 NA non-coding downstream 63415 23968449 ~ 23968654 (-)
G487673 NA non-coding downstream 74287 23957574 ~ 23957782 (-)
G487670 NA non-coding downstream 77901 23953876 ~ 23954168 (-)
G487795 NA non-coding upstream 149330 24191250 ~ 24191474 (-)
G487798 NA non-coding upstream 152842 24194762 ~ 24195075 (-)
G487801 NA non-coding upstream 156146 24198066 ~ 24198697 (-)
G487805 NA non-coding upstream 160002 24201922 ~ 24202251 (-)
G487807 NA non-coding upstream 162961 24204881 ~ 24205232 (-)
LOC110525552 LOC106585495 other downstream 314286 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 446515 23582127 ~ 23587892 (-)
G487016 NA other downstream 640007 23390017 ~ 23392062 (-)
G487022 bicdl1 other downstream 646162 23385534 ~ 23385907 (-)
G486953 NA other downstream 778708 23251286 ~ 23258106 (-)
G488386 NA other upstream 311613 24353533 ~ 24353823 (-)
LOC110525585 LOC106585524 other upstream 618977 24655788 ~ 24715090 (-)
G489038 NA other upstream 1064285 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 1455043 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 2237787 26271759 ~ 26283169 (-)

Expression


Co-expression Network