LOC118965019 (LOC106585477)


Basic Information

Item Value
gene id LOC118965019
gene name LOC106585477
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24557487 ~ 24566324 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981738.1
AAAATatgtttcctttcttttcttttctctagCCAATGGAGGGTGATTCAGCATGGCATGAAAAATAACCTCACATTCGAGCAGCTCTCCACGCTGTGTCTGAAGATTGTTAAAGTCGTGACCCAGACAGCCCTCCGCATTCTCCTACCAGCGCTAGCTCGTATCATGGGGGTGAACCTGAGGAGTGGGGCAACCTCCCCAGAATCCCAGTGCTCTCTGACAGGGTCTGAGGATTCCTTAGGCagtctggatgagagagagaaaaggctgctgatcagtgagatgaactactggactaaggagaggaggaggaatggcagtGCAGGGTGCCGCCAAAAATCCACTCGCAGAACCTCATCACCATGCTGTTCGCCTAAGAGGTCCCAGACCTCATTGCAGAGCTTGCCTGCAACTAGAGAGGCTCCCCTCATGGAGGATCCTCTGAAGGCTCTTTTTGGGGTAACGGAAGAGAGCCTCCTGATATCCCTGGTTGAGGGTCACTCCAACcccacctcctccagctcctccgagTTGAGCTGTGCTATCGTGGGGGAGGTGGTACACCAGCTTAACTCTGGCCTCTCAGTGGCCATTCAGGCCAGCCCGGGGAGTTGCCCCCCTATGGACAGTCAGGACATAGCAGCAGGCAAGGAGGTCATTCGGGTAGCCTCGGTGCAGATCCTGGCCGAGCTACAGAGCCAAACGTCTGAGCCAGAGTGGGTAGGGTTTATCGAGCCCCTCATGGACCCTGTGACCGATGATGTGCTGGATGCCATTGTCGGCACAATGGACAAAATGGCACAGGACTTCAACATCCTATTGGATCTGGCCAAGAAGATGACAATCTTGGGGTCTAAATTTCTGACCAATCTTCAATGTGACCTTGATGTTGAGTGTCCATCTGGGAAAGAAGGGACCACTCACTTTCTCAAAGAGACTGGATCCTCTACCAGTGTGGTGGCCAGAAAGCTTCAGACCCTCTCTAGCCCCGACTTTCAGTCTAAAGCCCTGAAGGCGGTGAGCACCATCCTTACAAGGAAAGTCAGCAGCTCTTCTGGCATGGCTCCTTCCTCTAGGCCTTCTAGTGCTGCTCCTAGCCTTACTGAAGCCCCCCTGAATACCAGCTGcacagccctgacatctgtaaccTCCACTGCCACAGTGATTGTTAAGGCATTTGTGGGAGGCATGGAGACGATAGCATCATTTGAAGGCACATGTGAAGCCGTTGATTGGCCAgttcctgtaaatgaccacaaaaCAGGATCTTCACAGATGATAACCTTCTCTCTAGCACGCACACTCTACGGCCGTATACGAGCAAAGCTGAGGGACCTTTTAACTCTATCCACTCGAGAAGAAGGTGTGGCTAAGGATGCTTCTCTTCAGGAGTCTTCAGACACCCTGGAAAAGGCAACTGTTTCAACTGTTGAGGTCCAGTTACCCAGCACCGAACTTAGTAGAGTTCCCAGAGAGAGCCAACCAATACCAGCTCTCTGTCGCTCCAATCTGGATACCAGTACTCAAGAAGTTCTTAGCagtgttttttccatctacaagtcagagttatcaaaaGTGGAGAGTAAATCCTTGGCCGTTGTCTGTTCATCTGATGAGTCCCTAGAGGCTTGTTGGTTTGTTGATGGTGTCCTATCAAAGCTCGATGACTATACTATTTCCCAGTCACCCTCACCCAATGAAGACTTGAGCGTGAGTACTCAATATTCTCAACTGAGctcagaagagagtgtcagaatCACAGAGTCCTCTACTAGTCTGATTCAGAGCATTAAGAAGCTCTCTAGCAATGACTTCCAGACTCAGGCAGAAGAGGCAGTGAGTAAAGTGCTGATGAGATCCAGTCATTCCTTTATCACACAGATCAGCCATACTGGTCTTCAGAAAAGTCTGCAGGCTGGCTTATCATCTAGCTCACCATCAGAGATCCATGTCCTTTCAGAATCCATGTCCTCCATGTCCTCTGAGAATACAGCCTCTGGATTAGTGGAAACCTTTGTCAAAGGAATGGCGACTATTTTCCAGAAAAATGAGTCCACTGACACTGTGCTACTGGAAAGAAGTGGGAGAGTTTCGCAGTGCTCCCACGGGGGCTCCCAAATGGATGATACTGAATTGAGTGTTAAAATATCAGAGGAGAAGCTTTGGTCAACAGCTAAGACCATCTGCGTCAGTATGAAGAACACACTTAAGGATTTCTTCACAGGGCTGAAGCCATACGGATCCGAAAGGACAGAAAATGCTTCTTCCAAAGAGACCCTTGGGGAAATCCTGGTTGCTATCCAGAGTGAAATCTCAAACTTAGGGCGAATGAAGGATTCCAGGGAGCTCCTTCAGATCAATGATATGGTAGGAACTATGCTGAAGGAGGttgagaaaagtgaggatgacAGTGAACAAGTCTGCCAAGACATCCCTAGAACCTGTTCATCTTTGTCCATTTCTTTAAATGGTCGTAGTTCCTTGTCCAGCTCTTCAAAGGGTCCTAGTTCAGAGTGTGAGTTAGAGATCaacctccctggcactcccatcccTGACGAAGTGCCTTTTGATCTGACCTGCCCCATCGTCAGGAGCTCCTGCATCGACACCAGGGTCTCTAAAATGCCAGATATTTCTTCAAGTGACATAAAGACAAAGATGATGGCACACATAGATGAACCCCTGCATCGTAACAGTCCAATGACTGACAGCAGTCGACCACCGAGTGCTAAAGCCTCTTTTCGATCCTCCACTCCGTCTTTCACCAGCAAGGGAACCTCTTTGGTGCCAAAGGAAGATGGGATTGACATTGACGAGAAGGAGGAGTGTATCCCCAGCAGCTCTGGCCATCTGAGGGAGCTCTTAATCACCCCGGACATCAGCAGTGCCACTGCATTCCCACAACAGTACTTGATGGACCCCAGCAAAGATGatggcatctgttttgtcaccatactggtgataaggttgctatcgaagatcagaccctcagccctagatggaccctcccaacaggcagcagacatgacagaaacatctcagcaactcatcagacaagtcctgtctgagttctgtgctgCATCCAGATTCTCCAGGACACAGGCATATTCCCAGAACCTGTACATCCACAGGGTGTTCAGAGGTGTACATCAAAACCTCATGGAGGAGTTTGGCTCTTATAACACCCTGCAAGCAGCTATTTCCTCCCAGGACCCTGCATTTGACAGAGTCCTGGTAAAGtccttgacccagcagctggtacaaggatgcaaggaggcgtcaagaccagcttctgctgcaacaaacccattagaccaggctgagacagagaggggggctgaAGTCTCCCGCATTCCGACGGAGCAGATAAAGCAGTACTGGGTAGAGCTGGTGGGGCTTTCAGAagattga

Function

NR:

description
uncharacterized protein LOC110513487

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981738.1 True 3411 mRNA 0.50 5 24557487 24566324

Neighbor

gene id symbol gene type direction distance location
ncor2 LOC106585520 coding downstream 53364 24317912 ~ 24504123 (-)
ccdc92 LOC106585518 coding downstream 333227 24211144 ~ 24224260 (-)
dtx1 LOC106585516 coding downstream 373118 24129400 ~ 24184369 (-)
LOC110525317 dgcr6 coding downstream 478439 24072614 ~ 24079048 (-)
LOC110525572 LOC106585514 coding downstream 485782 24059911 ~ 24071705 (-)
LOC118965071 LOC106585477 coding upstream 12381 24578705 ~ 24579373 (-)
ep400 LOC106579917 coding upstream 31646 24597970 ~ 24634358 (-)
LOC110525585 LOC106585524 coding upstream 89464 24655788 ~ 24715090 (-)
piwil1 piwil1 coding upstream 306899 24873223 ~ 24885005 (-)
LOC110525589 LOC106585529 coding upstream 345303 24911627 ~ 24917852 (-)
G488468 NA non-coding downstream 14592 24542366 ~ 24542895 (-)
G488463 NA non-coding downstream 15847 24540846 ~ 24541640 (-)
G488462 NA non-coding downstream 18062 24539224 ~ 24539425 (-)
G488454 NA non-coding downstream 35850 24521312 ~ 24521637 (-)
G488448 NA non-coding downstream 43577 24513624 ~ 24513910 (-)
G488487 NA non-coding upstream 26218 24592542 ~ 24596060 (-)
G488505 NA non-coding upstream 74201 24640525 ~ 24640755 (-)
G488506 NA non-coding upstream 75634 24641958 ~ 24642184 (-)
G488507 NA non-coding upstream 75893 24642217 ~ 24642779 (-)
G488508 NA non-coding upstream 77385 24643709 ~ 24644217 (-)
G488386 NA other downstream 203664 24353533 ~ 24353823 (-)
LOC110525552 LOC106585495 other downstream 839704 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 971933 23582127 ~ 23587892 (-)
G487016 NA other downstream 1165425 23390017 ~ 23392062 (-)
G487022 bicdl1 other downstream 1171580 23385534 ~ 23385907 (-)
G489038 NA other upstream 539881 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 930639 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 1713383 26271759 ~ 26283169 (-)
tmem230b LOC106585554 other upstream 1889408 26455731 ~ 26457883 (-)

Expression


Co-expression Network