piwil1 (piwil1)


Basic Information

Item Value
gene id piwil1
gene name piwil1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24873223 ~ 24885005 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605835.2
TTAGCGTTGAACTGTTGTTCATTTCATTCGCAAATTTGACGAGCGTAGTAATACTTTGAAGTGAGAAGACCTACACATACTGCGTTCAAGCAAGACAAAAGTTTAATTGCTGCTGCTGATTCGTTCTTTGACTAGGTTGAGTTTGTTTTAGAAACTGAAAATGACTGGCCGTGCACGAGCACGATCAAGGGGCCGAGCGCGCGGTCAAGAGACCGCGGCACCTGGCGTGACACCCTTTCAGGAGACAGCACGAGAAGCTCCCCCCTCTGAGGGTGAGCTTGTGGGTCGAGGAAGACAGAGAACTGCCCCAGGGGCTGTGTCCTCCGAAGCTGTTATTCAGATATCTGCAGGGTTTCAGCAGGTGAAgattggagagagaggtggacggCGTCGTGACTTTCATGATGCAGGAATCAACACCAGGCAGGCTATGGAGCATGTGAGAGAGTCCAAGTCTGGTTTCTCTGGCTCTCCCATTGAGCTGAAAGCCAACTTCTTCAAGATCCTGTCCCGCCCTCAGTGGGTGCTGTACCAGTACCATGTGGACTTCAAGCCCGTCATGGAGTCACGGCGCCTACGTTCTGCCCTCATGTATCAGCATGAGGAGACACTAGGCAAAGCTCGCACCTTTGATGGAGCCCTCCTCTTCCTGCCTCACAAACTGCACAACACGGAGACTGTGCTGTACAGTGAGACCAGAATGGGTGAGAAAGTCCAGATCACTGTCACTCTGACCAATGAGCTGCCCcccacttctccagtgtgcctgcAGTTCTACAACATCATCTTCAGAAGAGTACTGAGGATGCTGAACATGCAGCAGATTGGACGCCATTACTACAACCCAACAGACCCACTCAATATCCCACAGCACAGGCTGACCATCTGGCCCGGCTTTACTTCCACCATCCTGCAGTACGAGTCCAACATCATGCTGTGCACGGACGTGAGCCACAAGGTGCTGCGCAGTGAGACGGTGCTCAGCTTCATGATGGGCCTCAGGCAGCAGAGTGGAGATCAGCGCTTCCCAGAGGCCTGCACCAAGGAGCTGGTGGGACTCATCGTCCTCACCAAGTACAACAACAAAACCTACAGGATTGATGACATTGCGTGGGACCATACTCCCAACAACACATTCAAGAGGGGAGACTCTGAGATTTCTTTCAAAGACTACTACAAGGCACAATATGGTCTGGACATCACCGACGGCAACCAGGTGCTTCTGATCAGCCATATGAAGAAGATTGGTCCTTCTGGAGGACCGCcccaagggccagccatgcttgTCCCAGAGTTCTGCTACCTCACAGGCCTGACTGACAAGATGCGTGCTGACTTCAACATCATGAAAGAcctgtccacccacaccagactgACCCCAGAGCAGAGGGAGGGGCGGCTCAACCGCTTCGTTGGGAACATCCACCAGAACACGGAGGCCCAGACAGAGCTGAATACCTGGGGACTCAACTTTGACAACAAACTCCTGAGCCTCACAGGCAGGGTCCTCCCTTCGGAAAGGATTGTGCAGGGATCTAGAACGTATGAGTACAACCCCTGGCAAGCAGACTGGTCCAAGGAAATGAGAGGCATCCCACTGATCAGTTGCCGACCACTGGAGAACTGGTTAATGTTCTTCACCCGCAGAAACAATGATGTGGCCCAGGCCCTCCTGCAGACCCTCAACAAGGTCTCCACACCCCTGGGCATCCGCATGCAGAGGGCCATcatGGTGGAGTACGAGGACCGTCAGGAGTCTCTGCTCAGGGCCCTGCAGCAGAATGTTAAGAAAGAAACCCAGATGGTGGTGGTGGTCCTGCCCAGCAACAGAAAGGACAAGTACGACAGTGTGAAGAAGTATCTGTGTGTGGACTGCCCCACACCCAGCCAGTGTGTGGTGGCCCGCACCCTCTGCAAACAACAGGCCCTCATGACCGTGGCCACCAAGATCGCCCTGCAGATTAATTGCAAGATGGGAGGAGAGCTGTGGAGCGTGGAGATCCCACTGAAGCAGCTGATGATTGTGGGTATTGACTGCTACCACGACACGGCTGCTGGCAAGAGATCAATTGGAGCTCTGGTGGCCAGTCTTAACCAGGGCATGTCCAGGTGGTTCTCAAAGTGTGTGCTGCAGAACCGTGGACAGGAGATCATGGACGGACTCAAGGTGGCGCTGCAAGGTGCCCTGAAGGCGTGGCTGAAGCACAACAACTGCCTGCCGTCACGTATCATTGTGTACAGAGACGGAGTGGGAGACGGGATGCTGCAGAGTGTGGTCAACTACGAGGTGCCACAGATCATGGAGTCCATCAAGACCATGGGACACGACTATGCACCCAAACTAACCTTGGTGGTTGTGAAGAAGCGCATCAGTTCCAGGTTCTTTGCCCGCATCGATGGCAAGCTGACCAACCCTCCCCCTGGAACATGCATCGATACTGAGGTCACCCGCCCAGAATGGTACGACTTCTTCATTGTCAGCCAGGCCGTCCGCATGGGCAGTGTCTCCCCAACCCACTACAATGTGGTGTACGACAGCAGTGGACTGAAGCCTGACCACATGCAGCGACTGACCTACAAACTTTGCCACATGTACTACAACTGGCAGGGAATCATCCGAGTGCCTGCACCCTGTCAATACGCCCACAAATTGGCCTTCCTGGTGGGCCAAAGCATCCACAGAGAGCCCAACATGAACCTGGATGACTTCCTTTACTACCTGTAAGAGAGCACAAGCTAACTAAAGAGCACATTGGGGAACTTGGTTTCCTTGAAACTGTTTGATTTTTGTTCAGGAAATTGACTGAATTTACTTAGGGGTAAAGTGGTTAGGATATTCCCCAATTTACAGGAGAGTgaaaccatttttattttttttatacttcaGCAATTTGATTATCTTCTGTTTTATGCTGTTTTATTTGAAAAAATATTTGTAGATGGTCATTGCAAAGTGTTTTATTTGTGTGACATGGTATGAGACTGTTGAGAAGTTTGCTACCTCAGCTTTTATTTTGGCTgtacagtgcatttagaaagtattcagaccccttgactttctccacattgttacgttacagccatattaaaaaaattgattaaattgctgTTTTTCTCAACAATTTACACTCAATACCTaataatgaccaagcaaaaatatataagtTTTCAGACTCTTTACGGagtactttgtggaagcacctttggcagcgagtacaacctcaagacttcttgggtatgacgttacaagcttggcacacctgtatttggggagtttctcccaatctctgcagatcctctcaagctctgtcaggttggatggggagcgttactgcacagctattttcaggtctccagagatgttcaagtctgggctctggctgggccactcaaagacaatcagagacttgtcccgaagccacacctgcattgtcttggctgtgtgcttagggctgttgtccatttggaagatgaaccttcgccctagtctgaggtcctgagcgctctggagcaagtttttaTTGAGGATCTCTGTTAAtgtttgcctcgatcctgactggtctcccagtccctgcctctgaaaaacctccccacagcatgatgctgcctccaccatgcttcaccgtagggatggtgccaggtttcctccagacgtgaagcttggctttcaggccaaatagttaaatcttggtaTCATCAGACCCAATAATGTTATTTCTCATGGTCcccgagtcctttaggtgtcttttggcaaactccaagcggctgctgccttttactgaggagtggcttccatctggcataCCATAAAgacctaattggtggagtgctgcagagagggttgtccttctggaaggttctcccatctccacagaggaactctggtcactctgacagagctccatcgggttcttggtcacctctgtgaccaaggcccttctcccctgattgctcagtttggccggccagctctaggaagtgtcttggtggttccaaactaaaAGGTCCTTTttatagagacaggtgtgtgcctttccgaatcatgtccaatcaattgaatttaccacaggtggactccaatcaagttgtagaaacatctgaaggatgatcaatggaaacaatgcacctgagctcaatttcgagtctcatagcaaagggtctgaaaacgtatgtaaagaaggtatttctgttttttattgttaatacatttgcaaaaatttctaaacctgttttacttttgtcatcatggggtattttgtgtagattgaggaaaaatatttaatacattttagaataaggctgtaacataacaaaatgtggaaaaacttaCTTTCCGAACGCACCGTACCTCTTTGTTCAATATCACAGTGAACATTAAGGTTATTGCCTGGGTTGAAAAATTATTGTTTCAACTTTGGCGCAAAGTTGCACTTATGACatgttgttaaaaaaaaaaatgcagttaAATCAATTGATTAAAATAATTGTGGATCAAGTTTTGTTTAATTTGATTACCCTTCAGTAAAAGTTAACTTTGTA
>XM_021605836.2
TTAGCGTTGAACTGTTGTTCATTTCATTCGCAAATTTGACGAGCGTAGTAATACTTTGAAGTGAGAAGACCTACACATACTGCGTTCAAGCAAGACAAAAGTTTAATTGCTGCTGCTGATTCGTTCTTTGACTAGGTTGAGTTTGTAAGTTTTAGAAACTGAAAATGACTGGCCGTGCACGAGCACGATCAAGGGGCCGAGCGCGCGGTCAAGAGACCGCGGCACCTGGCGTGACACCCTTTCAGGAGACAGCACGAGAAGCTCCCCCCTCTGAGGGTGAGCTTGTGGGTCGAGGAAGACAGAGAACTGCCCCAGGGGCTGTGTCCTCCGAAGCTGTTATTCAGATATCTGCAGGGTTTCAGCAGGTGAAgattggagagagaggtggacggCGTCGTGACTTTCATGATGCAGGAATCAACACCAGGCAGGCTATGGAGCATGTGAGAGAGTCCAAGTCTGGTTTCTCTGGCTCTCCCATTGAGCTGAAAGCCAACTTCTTCAAGATCCTGTCCCGCCCTCAGTGGGTGCTGTACCAGTACCATGTGGACTTCAAGCCCGTCATGGAGTCACGGCGCCTACGTTCTGCCCTCATGTATCAGCATGAGGAGACACTAGGCAAAGCTCGCACCTTTGATGGAGCCCTCCTCTTCCTGCCTCACAAACTGCACAACACGGAGACTGTGCTGTACAGTGAGACCAGAATGGGTGAGAAAGTCCAGATCACTGTCACTCTGACCAATGAGCTGCCCcccacttctccagtgtgcctgcAGTTCTACAACATCATCTTCAGAAGAGTACTGAGGATGCTGAACATGCAGCAGATTGGACGCCATTACTACAACCCAACAGACCCACTCAATATCCCACAGCACAGGCTGACCATCTGGCCCGGCTTTACTTCCACCATCCTGCAGTACGAGTCCAACATCATGCTGTGCACGGACGTGAGCCACAAGGTGCTGCGCAGTGAGACGGTGCTCAGCTTCATGATGGGCCTCAGGCAGCAGAGTGGAGATCAGCGCTTCCCAGAGGCCTGCACCAAGGAGCTGGTGGGACTCATCGTCCTCACCAAGTACAACAACAAAACCTACAGGATTGATGACATTGCGTGGGACCATACTCCCAACAACACATTCAAGAGGGGAGACTCTGAGATTTCTTTCAAAGACTACTACAAGGCACAATATGGTCTGGACATCACCGACGGCAACCAGGTGCTTCTGATCAGCCATATGAAGAAGATTGGTCCTTCTGGAGGACCGCcccaagggccagccatgcttgTCCCAGAGTTCTGCTACCTCACAGGCCTGACTGACAAGATGCGTGCTGACTTCAACATCATGAAAGAcctgtccacccacaccagactgACCCCAGAGCAGAGGGAGGGGCGGCTCAACCGCTTCGTTGGGAACATCCACCAGAACACGGAGGCCCAGACAGAGCTGAATACCTGGGGACTCAACTTTGACAACAAACTCCTGAGCCTCACAGGCAGGGTCCTCCCTTCGGAAAGGATTGTGCAGGGATCTAGAACGTATGAGTACAACCCCTGGCAAGCAGACTGGTCCAAGGAAATGAGAGGCATCCCACTGATCAGTTGCCGACCACTGGAGAACTGGTTAATGTTCTTCACCCGCAGAAACAATGATGTGGCCCAGGCCCTCCTGCAGACCCTCAACAAGGTCTCCACACCCCTGGGCATCCGCATGCAGAGGGCCATcatGGTGGAGTACGAGGACCGTCAGGAGTCTCTGCTCAGGGCCCTGCAGCAGAATGTTAAGAAAGAAACCCAGATGGTGGTGGTGGTCCTGCCCAGCAACAGAAAGGACAAGTACGACAGTGTGAAGAAGTATCTGTGTGTGGACTGCCCCACACCCAGCCAGTGTGTGGTGGCCCGCACCCTCTGCAAACAACAGGCCCTCATGACCGTGGCCACCAAGATCGCCCTGCAGATTAATTGCAAGATGGGAGGAGAGCTGTGGAGCGTGGAGATCCCACTGAAGCAGCTGATGATTGTGGGTATTGACTGCTACCACGACACGGCTGCTGGCAAGAGATCAATTGGAGCTCTGGTGGCCAGTCTTAACCAGGGCATGTCCAGGTGGTTCTCAAAGTGTGTGCTGCAGAACCGTGGACAGGAGATCATGGACGGACTCAAGGTGGCGCTGCAAGGTGCCCTGAAGGCGTGGCTGAAGCACAACAACTGCCTGCCGTCACGTATCATTGTGTACAGAGACGGAGTGGGAGACGGGATGCTGCAGAGTGTGGTCAACTACGAGGTGCCACAGATCATGGAGTCCATCAAGACCATGGGACACGACTATGCACCCAAACTAACCTTGGTGGTTGTGAAGAAGCGCATCAGTTCCAGGTTCTTTGCCCGCATCGATGGCAAGCTGACCAACCCTCCCCCTGGAACATGCATCGATACTGAGGTCACCCGCCCAGAATGGTACGACTTCTTCATTGTCAGCCAGGCCGTCCGCATGGGCAGTGTCTCCCCAACCCACTACAATGTGGTGTACGACAGCAGTGGACTGAAGCCTGACCACATGCAGCGACTGACCTACAAACTTTGCCACATGTACTACAACTGGCAGGGAATCATCCGAGTGCCTGCACCCTGTCAATACGCCCACAAATTGGCCTTCCTGGTGGGCCAAAGCATCCACAGAGAGCCCAACATGAACCTGGATGACTTCCTTTACTACCTGTAAGAGAGCACAAGCTAACTAAAGAGCACATTGGGGAACTTGGTTTCCTTGAAACTGTTTGATTTTTGTTCAGGAAATTGACTGAATTTACTTAGGGGTAAAGTGGTTAGGATATTCCCCAATTTACAGGAGAGTgaaaccatttttattttttttatacttcaGCAATTTGATTATCTTCTGTTTTATGCTGTTTTATTTGAAAAAATATTTGTAGATGGTCATTGCAAAGTGTTTTATTTGTGTGACATGGTATGAGACTGTTGAGAAGTTTGCTACCTCAGCTTTTATTTTGGCTgtacagtgcatttagaaagtattcagaccccttgactttctccacattgttacgttacagccatattaaaaaaattgattaaattgctgTTTTTCTCAACAATTTACACTCAATACCTaataatgaccaagcaaaaatatataagtTTTCAGACTCTTTACGGagtactttgtggaagcacctttggcagcgagtacaacctcaagacttcttgggtatgacgttacaagcttggcacacctgtatttggggagtttctcccaatctctgcagatcctctcaagctctgtcaggttggatggggagcgttactgcacagctattttcaggtctccagagatgttcaagtctgggctctggctgggccactcaaagacaatcagagacttgtcccgaagccacacctgcattgtcttggctgtgtgcttagggctgttgtccatttggaagatgaaccttcgccctagtctgaggtcctgagcgctctggagcaagtttttaTTGAGGATCTCTGTTAAtgtttgcctcgatcctgactggtctcccagtccctgcctctgaaaaacctccccacagcatgatgctgcctccaccatgcttcaccgtagggatggtgccaggtttcctccagacgtgaagcttggctttcaggccaaatagttaaatcttggtaTCATCAGACCCAATAATGTTATTTCTCATGGTCcccgagtcctttaggtgtcttttggcaaactccaagcggctgctgccttttactgaggagtggcttccatctggcataCCATAAAgacctaattggtggagtgctgcagagagggttgtccttctggaaggttctcccatctccacagaggaactctggtcactctgacagagctccatcgggttcttggtcacctctgtgaccaaggcccttctcccctgattgctcagtttggccggccagctctaggaagtgtcttggtggttccaaactaaaAGGTCCTTTttatagagacaggtgtgtgcctttccgaatcatgtccaatcaattgaatttaccacaggtggactccaatcaagttgtagaaacatctgaaggatgatcaatggaaacaatgcacctgagctcaatttcgagtctcatagcaaagggtctgaaaacgtatgtaaagaaggtatttctgttttttattgttaatacatttgcaaaaatttctaaacctgttttacttttgtcatcatggggtattttgtgtagattgaggaaaaatatttaatacattttagaataaggctgtaacataacaaaatgtggaaaaacttaCTTTCCGAACGCACCGTACCTCTTTGTTCAATATCACAGTGAACATTAAGGTTATTGCCTGGGTTGAAAAATTATTGTTTCAACTTTGGCGCAAAGTTGCACTTATGACatgttgttaaaaaaaaaaatgcagttaAATCAATTGATTAAAATAATTGTGGATCAAGTTTTGTTTAATTTGATTACCCTTCAGTAAAAGTTAACTTTGTA

Function

symbol description
piwil1 Enables piRNA binding activity. Involved in several processes, including gene silencing by RNA; germ cell development; and piRNA metabolic process. Located in P granule. Is expressed in several structures, including blastodisc; central nervous system; eye; reproductive system; and unfertilized egg. Orthologous to several human genes including PIWIL1 (piwi like RNA-mediated gene silencing 1).

NR:

description
piwi-like protein 1

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0007281 germ cell development biological_process
GO:0006417 regulation of translation biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0043186 P granule cellular_component
GO:0005515 protein binding molecular_function
GO:0034584 piRNA binding molecular_function

KEGG:

id description
K02156 AUB, PIWI; aubergine

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605835.2 False 4539 mRNA 0.49 21 24873223 24885005
XM_021605836.2 True 4543 mRNA 0.49 21 24873223 24885005

Neighbor

gene id symbol gene type direction distance location
LOC110525585 LOC106585524 coding downstream 158133 24655788 ~ 24715090 (-)
ep400 LOC106579917 coding downstream 238865 24597970 ~ 24634358 (-)
LOC118965071 LOC106585477 coding downstream 293850 24578705 ~ 24579373 (-)
LOC118965019 LOC106585477 coding downstream 306899 24557487 ~ 24566324 (-)
ncor2 LOC106585520 coding downstream 369100 24317912 ~ 24504123 (-)
LOC110525589 LOC106585529 coding upstream 26622 24911627 ~ 24917852 (-)
LOC110525591 LOC106579906 coding upstream 287856 25172861 ~ 25375482 (-)
LOC110525597 NA coding upstream 564014 25449019 ~ 25451212 (-)
LOC110525601 LOC106585539 coding upstream 758227 25643232 ~ 25660249 (-)
lmx1bb LOC106585540 coding upstream 819169 25704174 ~ 25768796 (-)
G488646 NA non-coding downstream 30256 24839999 ~ 24842967 (-)
G488645 NA non-coding downstream 34137 24837596 ~ 24839086 (-)
G488620 NA non-coding downstream 69213 24803566 ~ 24804010 (-)
G488618 NA non-coding downstream 72512 24799516 ~ 24800711 (-)
G488574 NA non-coding downstream 85118 24744862 ~ 24788105 (-)
G488693 NA non-coding upstream 22219 24907224 ~ 24907442 (-)
G488694 NA non-coding upstream 34128 24919133 ~ 24919436 (-)
G488697 NA non-coding upstream 36180 24921185 ~ 24921431 (-)
G488700 NA non-coding upstream 38674 24923679 ~ 24923888 (-)
G488709 NA non-coding upstream 51327 24936332 ~ 24936571 (-)
G488386 NA other downstream 519400 24353533 ~ 24353823 (-)
LOC110525552 LOC106585495 other downstream 1155440 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 1287669 23582127 ~ 23587892 (-)
G487016 NA other downstream 1481161 23390017 ~ 23392062 (-)
G489038 NA other upstream 221200 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 611958 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 1394702 26271759 ~ 26283169 (-)
tmem230b LOC106585554 other upstream 1570727 26455731 ~ 26457883 (-)
LOC110525619 LOC106585557 other upstream 1662217 26481087 ~ 26551627 (-)

Expression


Co-expression Network