LOC110525589 (LOC106585529)


Basic Information

Item Value
gene id LOC110525589
gene name LOC106585529
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24911627 ~ 24917852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605837.2
TTTGTGTCTGCATATACCTGCGCTGGAACGTGCTAAATTCTGACACTTTTCTATCTAAAGTTTTAGTCGGAAATGGGGCAAATGGCCAGTGAGTAGTTTACAAGCTCTAAAATGCTGTGATGGTTGGTCTACTCTACAGGCTGTTCCGCACCATTTGAAAAAAATCACCGTGTCAGTTTCATCTTTCTTATGCAAAGTAGCTGTCTTTGAAGGCGGATCTTTTGGCAGGTTAGCCCAGGACAGTTGCAACGACAAGCTCAAACGAGAAATGCCACCAACCAGTCCAAACTGAATAGGTCTGTCTCTGGAGTGGTTAGTTAGGAATAGACCTCAACTCTGTTTTAGTTAATAAGGTTACTACACCGTTTGCGTGGATTTATCGTGCGCATTTAGGCTACTCAAACGCGGTGCAAGAGGAAGAGCAATTTAGTTGAGTTGGTAAATGACAGACTGGTTCCATTCGCGCTGCAGGACCTAATTTTAATGTCTATGTGCAGGACAGAGACCGGAGGATTCCGACCTGACGTTGTTGAAACCGAGGAGTACTGTCCCTTAACGCACTTTTAGAAGCTCTGGAACGTTTGTTTGGATCGGAACACTTTTATCCAATTAGAAAAAGAACCAAGGCAGACAAAGAAATTGTGCAACGGACTAGGCACAACTACAGTAAATGCATTTAATCTCTTAACATGTTGGATTTTTCTGCAACAAATTGATACACTTCAAAGCATGGACATTATGGTTCAAAGAGGAGAGACTATGCATTCCACTGCTAAACTGAGCCTTATCAATGTGCTACTGGTCTGTCTGAGTGGTGGCTGCTCAGCCATTAGCTCCATAGACCCAGACCGGCCGGGTGAAGGGAGATGTCAACAGATTGTCATCCCCCTATGTAAGGACATTGGCTACAACATGACAAGGATGCCCAATCTGATGGGCCATGAGGACCAGAATGAGGCAGCTATCAAACTACATGAGTTTGCCCCTCTCATAGGGTTTGGATGCCACACTCACCTCAAGTTTTTTCTCTGTTCGCTGTATGCACCTATGTGCACGGAGCAGGTATCCACCCCAATCCCTGCCTGCAGAGTGATGTGTGAGCAGGCCAGGCAAAAGTGCTCCCCTATCATGGAGCAGTTCAACTTCCGCTGGCCTGACTCCCTGGACTGCTCCAGACTACCTACTAAAAATGACCCCAACAACCTCTGCATGGAGGCCCCCAACAACGGCTCAGACGAGCCCCCCAAAGGCTCCCACACCCAGCGTCCTGACTTCAGGCTTCAGCGGCCCATGAAGGAGACGGAGAGCAAGGAGACCTGCAGTAACCCAGGCAAGTTCCACTATGTGCAGAAGAGTGAGTCCTGCGCCCCCAAGTGCTACCCCAAAGTGGATGTGTACTGGAGTCAGGGAGATAAGCAGTTCTCTCTGGTGTGGATGGCTATCTGGTCCATCCTCTGCTTCATCTCCAGCTCATTCACTGTCCTCACCTTCCTCATCGACCCCCAGCGATTTAAATACCCCGAGAGGCCTATCATCTTCCTCTCCATGTCCTACTGTGTCTACTCTGTGGGCTACCTGGTCCGTCTGTTTGTGGGAGCAGATAGTATCGCCTGTGACCGGGACAGTGGGGTCCAGTACATCATCCAGGAGGGACTGGAAAGCACGGGCTGCACCATCGTCTTCCTCATCCTCTACTACTTCGGCATGGCCAGCTCCCTCTGGTGGGTCATCCTCACACTCACCTGGTTCCTGGCTGCAGGGAAGAAGTGGGGCCACGAGGCCATCGAGGCCAACAGCAGCTACTTCCACCTGGCGGCCTGGGCCATCCCAGCCATCAAGACCATCATGATCCTGGTGATGAGGAAGGTGGCGGGGGACGAGCTGACGGGAGTGTGCTACGTGGGCAGCATGGACGTGAAAGCTCTCACAGGCTTCGTGCTCATCCCACTCTCCTGCTACCTCATCATCGGCACCTCATTCCTGCTGTCGGGCTTCGTGGCCCTGTTCCACATCCGCAAGATCATGAAGACTGAGGGGGAGAACACGGATAAACTGGAGAAGCTGATGGTACGGATCGGAGTGTTCTCCGTCCTCTACACTGTACCTGCCACCTGCGTTATCGCCTGCTACTTCTACGAGAGGCTCAATATGGACTACTGGAGGAGCCTGGCCGTGGAGCAGAGGTGTGTTGACAGCAGCAGGAACAATGCAGAGTCTGAAGAGTGTGGTATGAAGAGCTCCATCCCGGCCGTGGAGATCTTCATGGTTAAGATCTTCATGCTGTTAGTGGTGGGCATCACGAGTGGCATGTGGATCTGGACCTCAAAAACACTGCAGTCGTGGCAGAATgtatttagcaggaagctgaagAAGAGGACTAGGAGGAAGGCTGCCAGTGTGTTCACAAGCAGTGGGCCTTACATCAAGCCTCACCCAGCACTGAAAGCGCACAACACAAAGTATGAGCCTACCAGGCCCCCTCCTACATGCGTATGAGCTGGCGCTCTCACAGACAGTCTGCGAAACCAAAATCCTTCTAAAGCCCTTACCTAAAACAGACTTTTTAATCAGAGTGCCAACAAGAGACAACAATGTTCATATTTATTTGAAGTATTTTTTTGTTATCTTGATCCATCTCAAGCTACAAGGACAGCCTTTGTTTCAAATATCTGCTACTCCTGGAACCACTTATCCATTTAAGAACATgatagagaaaaaaaaaacgttttgtttCCAAGACAAAGAAATTGGAATAAACCATTTGGATGTGCAATAGATGTTTTCCTTAGTGGCAAAAAAAAGACAgatgaaagacaatgaaaagattCTGACAAAAGGGAGTGAATGGTCTGGGAGATGGAGACCCTTTAGTGTTGCGTTGTTTGGCTTTTTAATGGAAATCAAGGCAGTGTCACATGTTTGGACTGAAGTGAGAAAGCAGCTGTTGAAAGGGGCTCAGGATTGCATGGACTGCCTAATGTGACGCAAAATCACGCCACAACATAAATCAACAAGCACTGGACATCGCAAAAGTGACTATTTGTACAGACAGTTTTCCTGTTGTTGTATCTTTGCTGTTTTATAGCACAAGGGAGCATTTGTATATATTTCTTGAAGTTcatattttattaaaaaaataaataataaaacattccAGTTTTAAATGTCCAAAACTGGAACTGTATATTATAACTGTGTGGGTTTTATATGTCATGTGAATGAGTTCACAATGGGTTTTTACAAAAAGCACATTTCTCAATGACATTATTCCATTGGACATTTGAAGATAGTCATCACTAACCATTGATGTGAAGGTATGGAATATTTCAATCATCCACTgttgtctgagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagccgtgCACACACTTGACTTACAGTATCTCTCTTTTGAGAGGCTTATGCTTTTAATTACATAGACAAATTGGTGTTTGATGTTAGCCTTGTGAAAACTCTGACTTCTGTTGATACCTGATAGAATGGAGTGCACTCTCAATGAAGTACATACAGGATGAAGAAACAATGGCATCTGTACACGTCTGTTTTAATTGTTGAAAAGGAAAGCATCATGGGTAATCCAGAGCCCGCTCCCCCCATAGCGCATTTATTAGAGATGACTAATAGAAAAAAGTTTGATGACATCAAAGAGATTATGAACAAAGCACTTTTATATTATTGTAGAGTCGACCATTTTTAAAGCAAGGTTTTCATATTccattcctattaaaatgttcCTGTTCACGCCCATGTTTCATACATAAGCTATAAGGAAACAAAGGCTTTtaagtttgttttgtttttggttcACAGTTTTTGAGTTTGTTTGTAACATATAAAATCAGACAATATTTATCTAGAGCCTTCGATTTATTTCATCGCAAGAAAAAAGGTGCTAAAATCGAAGACTAGATAAAAAAAGTGCCTGATTTCATGTTAGAAATAAATGGAAAAACTGTgaaccaaaaacaaaacaaacttaATATGCAAATAAGGGTCTGATATGATCATCTCacaaataacctctcactcaaagaaCTCACTCAAGTCAGGCTTTGATTATGTTTCTGAGATAATCAGTCCACTGCTTTTAATGTTTTTTCTCGAATTACAGTTCTGCTCTGACTTCTTTAGGCCTATAGATGAACGTCTATGCAGTTAAGTTCAGATAACACAGATAATGATTTTGTTTTTGTGCCTTTTTGTCAGGTCACTGATTCAGTCACGTGTGTTTTCATGCGTGTGTGTTTTAGGGATGGGGATTATGCAATAATCCTACAGTCATTCAGGACAGGATTAGGCAGTTTGAAGGGTCTGGCTTTGAGAAGAGGATAACTGCAAACAAAATAAACTATATCTGTCATCTACCCTCCTCTTATCACCCAGGCATAGTGATATTTCTAAAGACACATCTGGCCTGGATTTCAAGCTATCATTTTGACTGAGACTCATTTTCAATAGCATGGTAGGCTATTGACAAACTAATATATCTGTTAGCGTACTAATTTGGGTGGGGGTTAAATGCTCTCACACTGTAAACAATTATGTAaacaggctgtcattgtaaattggtatttgttcttaaatgacttgcctggttaaataaaggttaaataaaattcaGGCCACATCCCCTTCAAACTACAAGTCCATTTTGGAGCGGAAACCACACTAACATGAGCTCAGCTACCCTCTGGGTTTTGTCTTTAGGATTTAGAGAGGTTACAGCACAAGACCAAGTGTGTAAAATGTCATTCTAATGTGAGGGTACTTTTTAGCCTATTAGACTTGAATACTCAACTACCAGCAATGAATACCCATTTTCATTAGGTCATACCATAAGAGACAATTTCAGAAAACACCAAAAAACAAGGATCATTCTGCACCTTCATTTTAACTTTAAGGTTTTGTGGCTTTTAATATGCATGAGAAGATCTCCCAGACCCAGGTATAATAATGTTGCAGGTTGAGTGTAAATATGTGCTCTCCCCTGAGGGCATTCAAGTTCCAGCATCAGCCCAACCCGTTTTAACAGTGAAAAGCACATGACTCACTGGCTGAATCAAATTCAAGTAGTTGATACTCTGTGTTGTGAAAAAGGTGAGTGTTTTCGAGGGCTTCAACAGAGGCCACCTGGATAACAGCCCCCGAGGTGTCTGGGAAAGCTGTAAATATGACAGTTACCAACCTCTTCCTCTGGAGCGTATGCTTCTAAGTTACTTCAATGTTTCCCTTTGAAAAGAAAATAGTATGTGAGCAAGGGCACAGTAGTGTCAGCCCAAAATGTTTTGGAATAAACTACACGTGCTTCTGAATTTCTCTCCGGTAGAGTTCTTGTTTTCATGACACTGTATCACAGATGATTAGACCTGCTATTCCTCATTGCTGGCATTGTTTTCCCCTAACAGTGCAAAGGCTTTATAGGTCTGGAGCTATGATTGAATCAACCAAGTGGCTCATTAGATAGTGTGTGTGTCACATGGCCCCTCTCATAGCCCAGTTGTTGTCCCTAGTGATGGTGTGGTAGACAACATGTTTTGTTTGTCCCAGTGGGGAATCTGGCAGCCGGCATGTAACTGGGGATAAGGGTCTTCAGATCACCATATCTCAAAGAATGACCATGGCCCCAATCTGAAAGGCCTCACTCATCCCCCACAGCCCCtatcacactcactctctcattccctcACCCTTCACTTCCTCGCAACTTTTCCTCTCAACAACTCTCCTGTTAATATGACACTCACAGACTGTAGTTCTCTACAGCAGCAGTCTTTTGGGGGAAGTGTACAGTGTTTGACAAAAGAGACCGGAGCTTCTGCTTGTGATCAgcttacccactgggcacaaactgtttgaatcaactttgtttcaacgtaatttgtaAATGAATTGTGACTTTAAACCtgcgtggaaaatacattggatttgaaaaagtaA

Function

NR:

description
frizzled-10-like

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0008406 gonad development biological_process
GO:0007420 brain development biological_process
GO:0001944 vasculature development biological_process
GO:0090504 epiboly biological_process
GO:0009790 embryo development biological_process
GO:0042995 cell projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K02842 FZD9_10, CD349_50; frizzled 9/10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605837.2 True 5975 mRNA 0.44 2 24911627 24917852

Neighbor

gene id symbol gene type direction distance location
piwil1 piwil1 coding downstream 26622 24873223 ~ 24885005 (-)
LOC110525585 LOC106585524 coding downstream 196537 24655788 ~ 24715090 (-)
ep400 LOC106579917 coding downstream 277269 24597970 ~ 24634358 (-)
LOC118965071 LOC106585477 coding downstream 332254 24578705 ~ 24579373 (-)
LOC118965019 LOC106585477 coding downstream 345303 24557487 ~ 24566324 (-)
LOC110525591 LOC106579906 coding upstream 255009 25172861 ~ 25375482 (-)
LOC110525597 NA coding upstream 531167 25449019 ~ 25451212 (-)
LOC110525601 LOC106585539 coding upstream 725380 25643232 ~ 25660249 (-)
lmx1bb LOC106585540 coding upstream 786322 25704174 ~ 25768796 (-)
pbx3b LOC106585542 coding upstream 1061102 25978954 ~ 26067633 (-)
G488693 NA non-coding downstream 4185 24907224 ~ 24907442 (-)
G488646 NA non-coding downstream 68660 24839999 ~ 24842967 (-)
G488645 NA non-coding downstream 72541 24837596 ~ 24839086 (-)
G488620 NA non-coding downstream 107617 24803566 ~ 24804010 (-)
G488618 NA non-coding downstream 110916 24799516 ~ 24800711 (-)
G488694 NA non-coding upstream 1281 24919133 ~ 24919436 (-)
G488697 NA non-coding upstream 3333 24921185 ~ 24921431 (-)
G488700 NA non-coding upstream 5827 24923679 ~ 24923888 (-)
G488709 NA non-coding upstream 18480 24936332 ~ 24936571 (-)
G488710 NA non-coding upstream 20447 24938299 ~ 24938515 (-)
G488386 NA other downstream 557804 24353533 ~ 24353823 (-)
LOC110525552 LOC106585495 other downstream 1193844 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 1326073 23582127 ~ 23587892 (-)
G487016 NA other downstream 1519565 23390017 ~ 23392062 (-)
G489038 NA other upstream 188353 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 579111 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 1361855 26271759 ~ 26283169 (-)
tmem230b LOC106585554 other upstream 1537880 26455731 ~ 26457883 (-)
LOC110525619 LOC106585557 other upstream 1629370 26481087 ~ 26551627 (-)

Expression


Co-expression Network