LOC110525597


Basic Information

Item Value
gene id LOC110525597
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 25449019 ~ 25451212 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473781.2
TAAGCTAGGTGTCAGGTCTTTTTATCCATAGCGGTGTTGGTTGGGGATCAGTATGTTGTGCCTGGAAGTGGCAGCATGTCATTAAACAtcactcacccctctcctctagaGGACAGTCATCTGGTTCACCATCTGTACCTGACCTCCTGCCTCTCATGGAGGAGCTGCTGCTGCCTGGACCTGTTTCCAAAGGAGACACATACAGGAGGACACTGAACTGACCTCCAAGACCAACATCCTGCTGGACTCTCCGGTCTCCTGGAAACAGTCTTGCTCACTTACAGCAGTCAGAAGACCTCCAAGAAGAGTAATCACTCATCACCGTACCATCACGTATGACGGTACGGAGCGGCTATGGGCTGAAACAGAAGTGTTGCTCCCACAGACTGATGTCCAGCTGTTTGATCCCAGCGGAGTCATTGAGAATCCAACGATGACCTCAGCTTTGGGCCGTCTCACCTTGCAAGTGCTCATCAATGCCCCTCCCTCAGTAAAGATCAGGATCCAGGCTCTGCACATGGGCCCCATGGACAACAGCACAGCAGCCCAGTCCACCTTCATTATGGTGAGGGAAGAGGGAGACCGTTCTGTTTTGATTCTTCAGTATTTCAATGCAAACTATCTAGTTGAGTGTACATTAAACAATGAACCTTCATCTTGACATGTATGCCATTGTAAAAAACATTATGTCTCCAATACCATCTGCATTACATACGAGATGTAGATGTCTTGAAGACCAACATGTTCAAGGGCCAACAGCTCTTTCACTAGCGCTCAGCTGGAAACATGGCGGAGATAGAATTCCATGGCAAGTACCTGCATAGCAAGGCTTCCGAGCAAAATACTCATTTGTGGAGCCTTGATCTGTGGCTCGTCTTTCTATTATACAGTATTTAATGACATTTAGGCCGTTACTGGAGGACAGTTTTTCCTTAGTTTAATCAATATTGTCAGGTTTTGCAACATTAAAATAAATACTCAAAGTGTAAATGATTATCATTACAGCAGTCTTTGGATTCGTTTTTTTAGTTGTATAGAAAACATTTACCAATGTGAATCACAGCAGAACCACTCAGCAAGTCATTATTATGGCTCATCTGGTATAGTATGGCACACAATTTCATTACTTAAATAACTTAACTGTTGAACTGATTATttttaaaatatgaaataacaagTATGTAGGTAAACAAACGGAATAAATGCATGTAAAAACCACCAGAATAATATTTAAGACAGCACCAACATGTgtagactttaaaaaaaaa
>TU556105
TGTAAATGATTATCATTACAGCAGTCTTTGGATTCGTTTTTTTAGTTGTATAGAAAACATTTACCAATGTGAATCACAGCAGAACCACTCAGCAAGTCATTATTATGGCTCATCTGGTATAGTATGGCACACAATTTCATTACTTAAATAACTTAACTGTTGAACTGATTATttttaaaatatgaaataacaagTATGTAGGTAAACAAACGGAATAAATGCATGTAAAAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473781.2 False 1268 mRNA 0.43 3 25449019 25451212
TU556105 True 233 lncRNA 0.30 1 25449070 25449302

Neighbor

gene id symbol gene type direction distance location
LOC110525591 LOC106579906 coding downstream 73537 25172861 ~ 25375482 (-)
LOC110525589 LOC106585529 coding downstream 531167 24911627 ~ 24917852 (-)
piwil1 piwil1 coding downstream 564014 24873223 ~ 24885005 (-)
LOC110525585 LOC106585524 coding downstream 733929 24655788 ~ 24715090 (-)
ep400 LOC106579917 coding downstream 814661 24597970 ~ 24634358 (-)
LOC110525601 LOC106585539 coding upstream 192020 25643232 ~ 25660249 (-)
lmx1bb LOC106585540 coding upstream 252962 25704174 ~ 25768796 (-)
pbx3b LOC106585542 coding upstream 527742 25978954 ~ 26067633 (-)
LOC110525604 LOC106585543 coding upstream 783340 26234552 ~ 26264035 (-)
LOC110525606 LOC106585545 coding upstream 820547 26271759 ~ 26283169 (-)
G489329 LOC106585340 non-coding downstream 11051 25437663 ~ 25437968 (-)
G489328 NA non-coding downstream 13060 25435443 ~ 25435959 (-)
G489311 NA non-coding downstream 14406 25433514 ~ 25434613 (-)
G489317 NA non-coding downstream 29237 25419528 ~ 25419782 (-)
G489316 NA non-coding downstream 30802 25418011 ~ 25418217 (-)
G489309 NA non-coding upstream 3885 25455097 ~ 25458118 (-)
G489332 NA non-coding upstream 9179 25460391 ~ 25460724 (-)
G489333 NA non-coding upstream 10164 25461376 ~ 25461681 (-)
G489336 NA non-coding upstream 14548 25465760 ~ 25466022 (-)
G489322 NA non-coding upstream 37950 25489162 ~ 25490155 (-)
G489038 NA other downstream 342449 25106205 ~ 25106570 (-)
G488386 NA other downstream 1095196 24353533 ~ 24353823 (-)
LOC110525552 LOC106585495 other downstream 1731236 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 1863465 23582127 ~ 23587892 (-)
G489511 hmcn2 other upstream 45751 25496963 ~ 25497489 (-)
tmem230b LOC106585554 other upstream 1004520 26455731 ~ 26457883 (-)
LOC110525619 LOC106585557 other upstream 1096010 26481087 ~ 26551627 (-)
G491291 NA other upstream 1373655 26824867 ~ 26867158 (-)

Expression


Co-expression Network