tmem230b (LOC106585554)


Basic Information

Item Value
gene id tmem230b
gene name LOC106585554
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26455731 ~ 26457883 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605898.2
GACGGTTCAGAGCATTGCGCAGGCGTTGTACAGACTAAACAAGGAAGAGGGCATGAGTGCGGACGTTTTTATTGCAACAACATGTTATGTTTATGTTCTAACTCCTGATCTGAAAAGGCGGTATCCCTCTTTCTATTTTCATTTGGTTGCAACATAGGCTAATCGTAGTGAGTCGAGAGGAGCTGACACACTGATTAACACGTTCGTTGCAAGTTGACAACAGTGTATCTGAATAGGCAAGTGTCATCATTGTAGCATTTCTCAATATGAAATGATACAATGTACCGGCTGCCAATGTAACATAACAATGCAACAGTTTTAGCAAGTAATTTAAAGTAAAGATGAACGCTCGCAGCAGTTTAAGACAAGGAATACTTAACACTAAGGTCAGGTACTCCAAACTAGCCAATGATGATGACGGCTACATTGACCTGCAGTTCAAAAAAAGCCCACCAAAGGTCCCATACAAAGCCATTGCACTGGCAACTGTCCTCTTCTTGATTGGCTCTCTGTTGATCACCATTGGAGCTCTCCTTTTGGCAGGATACTTTGAAGTCACACATGCTGACCGGACTGTGCCCGTTCTCATAATTGGAATCTTGGTTTTCCTTCCTGGATTCTATCACCTACGGATAGCTTACTATGCATCGAAGGGCTACCGTGGTTACTCCTACGATGATATCCCAGACTTTGATGACTGAGCCACTCCTAACTGAGGCAACTTCTTTGTTATTTTCACATAACATTGTTGAATACAGTAAACAGACTGGGATCCAGGGTAGTCCTAAAGCAGATGTCCTTTTGATGTTTGTTCATCATGTCATGTCTGTTCACTTCTTGTTCTTTGACTGGATTACCACCATACTTCATTGTGAATGACTACTATATTTAGATAGGTTTGTGTTATTGTTTCTAACAAATAACATGCACATTTGTATTTACTTCATGACATGTCTTGTTTTTTTGCTACATATGCATatattttacatatacattttacatacatggcACTTTCATATACAGCAatcacataacaataatacataaCCGAACAGAGCTATTTAATCCCACCTCTCAGCCACTCTCATCCCACCTATCACTGTAGACCACCCTTGATTTTTAGTTGACTGACCAATTGGAAATGTGATTCTAGGATGCATTTTTTCCCCACATAACTTGCAGTTTGAGGTTTAGAGcaaattttgtttatttattcccATAGTTTTGGCCTCGTGTAGGTATACCCACACTTATCTATAAAAGGGAAGGATGTAATTTCTGATAAAATACATAGCTGTGCTGTAAGGGAGGCATGAGTTTAATTGTATTGTCCAACTGAAAGACCTGATCAGTGTAACCGTAAATCAATTTACTCTCACTCTGGTTGGTACCCCAACAGAACCATGAGTTTGAGATATTATGGCTAAACTTGAAAGTTGACTTTGTTTTTCTGTTGAAATGTCGCTTATGCTTTCCTGGAGGGTTCCTGGTAGGAGTATTTTATGTGATTAATGCCAATTCTTTGATCTCCATATGGTGTGCTGCTAGGCCTGTGAGAGTCAAGAAGGAAACGTTGTCACGCAACAATATAGTGTCTGGTGTAGTTTTCCACtggctgattttgaaaggcattGTCACTTGCAATGAAGTCTGTAGTGTATCCATATATTCAATTTAAAGGCATTTGTGGTTGAGCATCAGCTCCAATAAAGACTGTATCATGAA
>TU557449
GGAAGAGGGCATGAGTGCGGACGTTTTTATTGCAACAACATGTTATGTTTATGTTCTAACTCCTGATCTGAAAAGGCGGTATCCCTCTTTCTATTTTCATTTGGTTGCAACATAGGCTAATCGTAGTGAGTCGAGAGGAGCTGACACACTGATTAACACGTTCGTTGCAAGTTGACAACAGTGTATCTGAATAGGCAAGTGTCATCATTGTAGCATTTCTCAATATGAAATGATACAATGTACCGGCTGCCAATGTAACATAACAATGCAACAGTTTTAGCAAGTAATTTAAAGTAAAGATGAACGCTCGCAGCAGTTTAAGACAAGGAATACTTAACACTAAGGTCAGGTACTCCAAACTAGCCAATGATGATGACGGCTACATTGACCTGCAGTTCAAAAAAAGCCCACCAAAGGTCCCATACAAAGCCATTGCACTGGCAACTGTCCTCTTCTTGATTGGCTCTCTGTTGATCACCATTGGAGCTCTCCTTTTGGCAGGATACTTTGAAGTCACACATGCTGACCGGACTGTGCCCGTTCTCATAATTGGAATCTTGGTTTTCCTTCCTGGATTCTATCACCTACGGATAGCTTACTATGCATCGAAGGGCTACCGTGGTTACTCCTACGATGATATCCCAGACTTTGATGACTGAGCCACTCCTAACTGAGGCAACTTCTTTGTTATTTTCACATAACATTGTTGAATACAGTAAACAGACTGGGATCCAGGGTAGTCCTAAAGCAGATGTCCTTTTGATGTTTGTTCATCATGTCATGTCTGTTCACTTCTTGTTCTTTGACTGGATTACCACCATACTTCATTGTGAATGACTACTATATTTAGATAGGTTTGTGTTATTGTTTCTAACAAATAACATGCACATTTGTATTTACTTCATGACATGTCTTGTTTTTTTGCTACATATGCATatattttacatatacattttacatacatggcACTTTCATATACAGCAatcacataacaataatacataaCCGAACAGAGCTATTTAATCCCACCTCTCAGCCACTCTCATCCCACCTATCACTGTAGACCACCCTTGATTTTTAGTTGACTGACCAATTGGAAATGTGATTCTAGGATGCATTTTTTCCCCACATAACTTGCAGTTTGAGGTTTAGAGcaaattttgtttatttattcccATAGTTTTGGCCTCGTGTAGGTATACCCACACTTATCTATAAAAGGGAAGGATGTAATTTCTGATAAAATACATAGCTGTGCTGTAAGGGAGGCATGAGTTTAATTGTATTGTCCAACTGAAAGACCTGATCAGTGTAACCGTAAATCAATTTACTCTCACTCTGGTTGGTACCCCAACAGAACCATGAGTTTGAGATATTATGGCTAAACTTGAAAGTTGACTTTGTTTTTCTGTTGAAATGTCGCTTATGCTTTCCTGGAGGGTTCCTGGTAGGAGTATTTTATGTGATTAATGCCAATTCTTTGATCTCCATATGGTGTGCTGCTAGGCCTGTGAGAGTCAAGAAGGAAACGTTGTCACGCAACAATATAGTGTCTGGTGTAGTTTTCCACtggctgattttgaaaggcattGTCACTTGCAATGAAGTCTGTAGTGTATCCATATATTCAATTTAAAGGCATTTGTGGTTGAGCATCAGCTCCAATAAAGACTGTATCATGA

Function

NR:

description
transmembrane protein 230-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605898.2 False 1725 mRNA 0.39 3 26455731 26457883
TU557449 True 1682 TUCP 0.39 3 26455732 26457841

Neighbor

gene id symbol gene type direction distance location
igsf9b LOC106585552 coding downstream 311 26404186 ~ 26455420 (-)
LOC110525611 LOC106585549 coding downstream 64440 26382960 ~ 26391291 (-)
LOC110525608 NA coding downstream 120898 26330079 ~ 26334833 (-)
LOC110525607 LOC106585546 coding downstream 138415 26293688 ~ 26317316 (-)
LOC110525606 LOC106585545 coding downstream 172563 26271759 ~ 26283169 (-)
dpysl2a LOC106585556 coding upstream 45061 26502944 ~ 26530832 (-)
LOC110525619 LOC106585557 coding upstream 77145 26481087 ~ 26551627 (-)
LOC110525620 LOC106585558 coding upstream 95655 26553538 ~ 26564330 (-)
LOC110525621 LOC106585565 coding upstream 184378 26608848 ~ 26711398 (-)
LOC110525622 NA coding upstream 255573 26713456 ~ 26724026 (-)
G490517 NA non-coding downstream 65586 26389780 ~ 26390145 (-)
G490513 LOC106585548 non-coding downstream 85353 26369257 ~ 26370378 (-)
G490511 NA non-coding downstream 90286 26365205 ~ 26365445 (-)
G490506 NA non-coding downstream 99859 26355414 ~ 26355872 (-)
G490431 NA non-coding downstream 231391 26223969 ~ 26224340 (-)
G490616 NA non-coding upstream 8119 26466002 ~ 26466279 (-)
G490621 NA non-coding upstream 9638 26467521 ~ 26468331 (-)
G490886 NA non-coding upstream 85607 26543490 ~ 26544586 (-)
G489511 hmcn2 other downstream 958242 25496963 ~ 25497489 (-)
G489038 NA other downstream 1349161 25106205 ~ 25106570 (-)
LOC110525585 LOC106585524 other downstream 1746311 24655788 ~ 24715090 (-)
G488386 NA other downstream 2101908 24353533 ~ 24353823 (-)
G491291 NA other upstream 366984 26824867 ~ 26867158 (-)
G491539 NA other upstream 758724 27216607 ~ 27244193 (-)
LOC110525653 NA other upstream 1277113 27734995 ~ 27737024 (-)
LOC110525655 LOC106585601 other upstream 1369348 27827231 ~ 27885634 (-)

Expression


Co-expression Network