LOC118965072 (LOC106579843)


Basic Information

Item Value
gene id LOC118965072
gene name LOC106579843
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 27817576 ~ 27820202 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981825.1
tacccaagaagactctaggctgtaatcactgcctaaggtgcttcaacaaaaaactgagtaaagggtctgattactaatgtaaatgtgatgtatATTTTATAAATTCGATAAcatttcttaacctgtttttagtttgtcattatcgggtattgtgtgtagatagatgaggtCAAAAAAacaaattcattttagaataaggctgtaacaaaacgtGGAGAATTTGAAGTgggcagaatactttccgaaggcactgtctGTTCTGTAAGTATATGTTTGCATGAACTGTTCCCTTTGTCTTCACAGCACCCTCAGATGATGATCATGAGGTGATTACTATGatcaaagagcttctggataccCGAATCAGGCCCACAGTGCAGGAGGATGGTGGAGATGTCCTGTATTGCGGCTTTGAGGATGGCATTGTGAAGCTGAAGCTGCAGGGCTCCTGCACCAGTTGCCCCAGCTCCATGGTTACACTGAAGAGTGGCATCCAGAATATGTTGCAGTTCTATGTCCCTGAAGTGGAAGGGGTAGAGCAGGTGAAGGATGAGCAAGAGGAAGTTGTCCAAGGCTGAGTCCAATGGAATCGACTGACTCTACAGACATTCTTCTTACCCTCTCCCCTCCAGCACCCACTCCTGACTCCATCCTATAGTGGATTAATGAGCATCGTAGAGTCCTGTCTAAAGCACAGCAGTGGTAAAAGAAGAACTGCAGGGTTATTTGGAGAGATTTCTCATTGAACTTCATAGCAATTCTCAGAGATTGTCAGCTGTTAAGTCATTCTGGCTATGTGTTTCAGTGGGTAAGATGTACTGTCTTTGTCCTGCTGCTTGCTTTGAAAGGCTTCTAAGGTGAAGGATTTCAGCTTGTCTGACGATTCATTTATTACAGTTTCTAGTATTGTCACACCGTATAACTCAGTAAGTATTGGTTATTACaggcccaatgcagccgtttGTATATGATTATCAcctcatttctgggtaacaattaagtaccttactgtaaaagATTTCCATTCAAATGGgcaaaatagctttttagcaaaaAACGACATCAAGTAAGGATTTTGCAAAGGCGAGAATGGAGAACTAGCTGTCATTGTCAGAGAGGTTTGAAGCTCTTTATTGGTCTATTcatttaccgcatggtgatgtcaccatggaaatcCGAAACTCCCACACATGCAAACCTGCTgtttagaaggtcctgtgtagattgtattttcaaccagcagctatcaggaaataacactgataaaTTGTTTCACTCCTTTACAGTGTTTGGTTCATCAGCTGTTGTTCAATATATACATTTGGACTGCACTGAGCCTTTAAAAAAAGCACAACTCCATCTATATACAACACAAATGTGCACACTGtataatgtaaataaataaaatgcattGAATTAAGTATGAAATGATTTTCTTTAATGCATTGAATGTAgttctttcttgaactgcactgttggttcagagcttgtaagaaagcatttaaAGTAAGGTCTACACgttatattcggcgcatgtgacagtTTGATATGATTTGAAATTGCCAACCAAATAATCTGTCAACCTGACAGGGGAAATGGTGCACAGATGGAGTATGGTCTGGAGGAAAGCTTGAGTTTGCGTTGGTTTTTAAGTCTGTTATTATTATGTGAATGTATAATAAGCAATTAAA

Function

NR:

description
NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0005737 cytoplasm cellular_component
GO:0005506 iron ion binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981825.1 True 1691 mRNA 0.40 3 27817576 27820202

Neighbor

gene id symbol gene type direction distance location
LOC110525654 LOC106585600 coding downstream 4694 27798270 ~ 27812882 (-)
LOC110525653 NA coding downstream 80552 27734995 ~ 27737024 (-)
LOC110525649 LOC106585595 coding downstream 93573 27714131 ~ 27724003 (-)
LOC110525648 LOC106585594 coding downstream 111866 27652785 ~ 27705710 (-)
LOC110525644 LOC106585592 coding downstream 239055 27561557 ~ 27578521 (-)
LOC110525655 LOC106585601 coding upstream 12050 27827231 ~ 27885634 (-)
LOC110525658 LOC100195761 coding upstream 207974 28028176 ~ 28044300 (-)
LOC110525659 LOC106585607 coding upstream 224603 28044805 ~ 28105169 (-)
LOC110525660 pdli2 coding upstream 290766 28110968 ~ 28180720 (-)
LOC110525662 LOC106585608 coding upstream 373306 28193508 ~ 28247237 (-)
G492208 NA non-coding downstream 23830 27791875 ~ 27793746 (-)
G492207 NA non-coding downstream 40629 27776556 ~ 27776947 (-)
G492235 NA non-coding downstream 41771 27775598 ~ 27775805 (-)
G492229 NA non-coding downstream 46769 27770598 ~ 27770807 (-)
G492195 NA non-coding downstream 88285 27729057 ~ 27729291 (-)
G492279 NA non-coding upstream 72666 27892868 ~ 27893100 (-)
G492284 NA non-coding upstream 76080 27896282 ~ 27896518 (-)
G492289 NA non-coding upstream 89364 27909566 ~ 27909770 (-)
G492295 NA non-coding upstream 94073 27914275 ~ 27914474 (-)
G491539 NA other downstream 573383 27216607 ~ 27244193 (-)
G491291 NA other downstream 950418 26824867 ~ 26867158 (-)
LOC110525619 LOC106585557 other downstream 1265949 26481087 ~ 26551627 (-)
tmem230b LOC106585554 other downstream 1359735 26455731 ~ 26457883 (-)
G494389 LOC106585296 other upstream 1591013 29411215 ~ 29415314 (-)
LOC110525681 hectd4 other upstream 1658453 29411204 ~ 29483533 (-)
LOC110525684 LOC106585295 other upstream 1682051 29502192 ~ 29520980 (-)
G494542 NA other upstream 1855121 29675323 ~ 29675573 (-)

Expression


Co-expression Network