arid5a (LOC106585613)


Basic Information

Item Value
gene id arid5a
gene name LOC106585613
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28414737 ~ 28425225 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606012.2
CCATGTGGCTTTATATTAAAACTGCGTTTTCTTTCGTTGTTACTGGAGTGTGTGTTAGCTTACAGAATATTCAGTGATAGATCACACGTATACTTGTTCTTGCTGTTAGCACAGGACTGGAAATGCAATCATAGGTGAACCAAGGCATCAGCTTTTCACATAGTATTTGATTCTGAAGGGGGGCGAGACACCAGTCAGAGACCAGTCATGGAGGAGGGCAGAGGTGTGGAGGGGACACTGAACCAGAATTCTGCAGCGATGGAGATTTCTGACTCAGCCAGTGAATGTGAGGAGCCTCCCAGGTCTAGCCcaatggagacagaggagaggtcctTCATAGCCAATTTGCACTGTTTCATGAAGGACAGAGGCACACCCATAGAGAGGATACCACACCTGGGCTTTaagcagaTTAACCTGTGGAAAATCTAcaaaactgttgagaagcttgGCAGTTACGACTCTGTGACAGCACGACGGCTGTGGAAGAATGTGTATGATGAGCTGGGGGGCAGCCCAGGCAGCACCAGCGCTGCTACCTGTACCCGCAGACACTATGAGAGGCTTGTTTTACCCTTTGAGAGACagttgaggggagaggaggacaaaCCTCTGCCTCCAAGCAAACCACGCAAACAGTACAAGAGGAGCCCTGAGGGAAGCAAGTCTGAGGGCAAGAGGAAGAGGCCCCATCTGGAAAAGGAGACGGACTCTGAGGGCCAGCTACACTCTACTCCATCGTCTCCATGGACCACTCCATCTGAAAGGCTCCACCCAGACCGTCCTCCACCAAACAATGAGACTACCGTCAGTGACGACCTCTCTTCCTCTGCGTACTCCCTATCCCAGCCAGGTCAGGTCCAGTCTTCTGCTTCAGACATCATCTCCCCTCTGGAGAAGAAGAAGCGTATGGCCCAGGCCAGCCTGAGTCAGTCCCAGGACTGTCAGAGCCCCAAACAGGAGGACCGTAAGGGCAGGCCCTCTGTGATCCACTGCTCCCAGTCCCCAGGGCTGGTCCGTTCTAGCCGGACACGCACTACCTCGGagggctctcctctccctccgtcgTCCTCCTCTTCCCGTAGCCCATCCCCCTACTCCATCTCCTCTGAGGACTGTCCAGCACTAACTGAAGAGAGGCCCCCAGTTCCAAAACCAGAAGTACCTCTTCCTTTTTCCAGCAACCCAATATCTGCCTGCAGTGGGGTCCACAAGCCTCAGAGCTGCAGCCCTGATGTCAAGAAATATGTTGGCTTCCCTGGAGGACAAAGAGATTTCCCTCAGGTCAGCCCTCTACTGGGTGACACAGTTTCTATCAAAGGTCAGAGTAAAAACTCTGTATGGAGCCCTGTCTGCAATGGGAGTAACAGACGTCCAGCTCACCAAATATCCCCACCAACGTCCTGCACGTATACTGTTAGGTCTTGCTTGGTTCCATCCACCTCCAGTTTCACTAAAGTTTATCCCAAATCTATAGAGCCTTTGCGGCCTATACCCTTTCGACCAGGTTACACATTCCATCAGAACCCAAATAGGCCCATGTTACATGATAATGATCTGATCTATACTAAGAAACTACATATGGTCCCTCGACATTATCAGACAGAGAAAAAGGAGAAGTCCACGACAATGTTGCCAAAGCCACTTCCAACGCAACAACCTGTATTCCACTCTAATGTCAGCATACCAGTGTCCTACCTCGTCCCAGCCTATGACAGGACAAGGGGAGACTCTGGACAGAAGCCACCTGTACACCCATTATTTCTATCCACCAACAGACTGCCTCAGTCCCAGATCAACCCTATGTACCGTCATGCCGCAACGGGACACACCAATGCTTCCCCTTATGAGCCTGCTCTCTACTCCTATCCCTATTCCATTCCTATGTTGAATCCCCATACTGGTTACAGCATCACTGGCGTGCATTATCCTCAAACTAGGCTGTGATAGCCCAGCCTACCTCTCGCAGAGCTTATAGACAATGTGACAAGTCAAATGGAGATAATGACAGTACCTGCTTCGTTCTAGACATTTTCTAAACTTGACTCGAACACAGCTGCATTCTATGTGAGTGATCAACAGAGAAACGTTGTTGTGATTATTATCCCGAGATGGGCTCCCCACTGTGGCAACTGATAGAATTGCACTAATAAAAAGGACTCATCTTTCTGTATTTGTAACAATAGCCCTCTGGTTTACTGCTATGTACGTTTTTTTATTGTATGATAAAATTATTTTGCATGGAAATAATATGAAACAACACAGATGTAATTGTTTATTCTGAATAAAATCTAAAATAATTCCTGTCTGATCCAAGTCTGCA
>XM_021606011.2
CTTGCTGTATTGTAGACATGATCAACCAATAATAATCCATTGACAACGTCTTATTCCGAGGTGTGCTAAATTAGAGAAGCTTCTTCAGTAAAGTGGTGCTGAAACAAAGTAAACCTTCTCCAAGTCGCGAGTCAAGGGATTATTTTGTAAATGGTATTTGATTCTGAAGGGGGGCGAGACACCAGTCAGAGACCAGTCATGGAGGAGGGCAGAGGTGTGGAGGGGACACTGAACCAGAATTCTGCAGCGATGGAGATTTCTGACTCAGCCAGTGAATGTGAGGAGCCTCCCAGGTCTAGCCcaatggagacagaggagaggtcctTCATAGCCAATTTGCACTGTTTCATGAAGGACAGAGGCACACCCATAGAGAGGATACCACACCTGGGCTTTaagcagaTTAACCTGTGGAAAATCTAcaaaactgttgagaagcttgGCAGTTACGACTCTGTGACAGCACGACGGCTGTGGAAGAATGTGTATGATGAGCTGGGGGGCAGCCCAGGCAGCACCAGCGCTGCTACCTGTACCCGCAGACACTATGAGAGGCTTGTTTTACCCTTTGAGAGACagttgaggggagaggaggacaaaCCTCTGCCTCCAAGCAAACCACGCAAACAGTACAAGAGGAGCCCTGAGGGAAGCAAGTCTGAGGGCAAGAGGAAGAGGCCCCATCTGGAAAAGGAGACGGACTCTGAGGGCCAGCTACACTCTACTCCATCGTCTCCATGGACCACTCCATCTGAAAGGCTCCACCCAGACCGTCCTCCACCAAACAATGAGACTACCGTCAGTGACGACCTCTCTTCCTCTGCGTACTCCCTATCCCAGCCAGGTCAGGTCCAGTCTTCTGCTTCAGACATCATCTCCCCTCTGGAGAAGAAGAAGCGTATGGCCCAGGCCAGCCTGAGTCAGTCCCAGGACTGTCAGAGCCCCAAACAGGAGGACCGTAAGGGCAGGCCCTCTGTGATCCACTGCTCCCAGTCCCCAGGGCTGGTCCGTTCTAGCCGGACACGCACTACCTCGGagggctctcctctccctccgtcgTCCTCCTCTTCCCGTAGCCCATCCCCCTACTCCATCTCCTCTGAGGACTGTCCAGCACTAACTGAAGAGAGGCCCCCAGTTCCAAAACCAGAAGTACCTCTTCCTTTTTCCAGCAACCCAATATCTGCCTGCAGTGGGGTCCACAAGCCTCAGAGCTGCAGCCCTGATGTCAAGAAATATGTTGGCTTCCCTGGAGGACAAAGAGATTTCCCTCAGGTCAGCCCTCTACTGGGTGACACAGTTTCTATCAAAGGTCAGAGTAAAAACTCTGTATGGAGCCCTGTCTGCAATGGGAGTAACAGACGTCCAGCTCACCAAATATCCCCACCAACGTCCTGCACGTATACTGTTAGGTCTTGCTTGGTTCCATCCACCTCCAGTTTCACTAAAGTTTATCCCAAATCTATAGAGCCTTTGCGGCCTATACCCTTTCGACCAGGTTACACATTCCATCAGAACCCAAATAGGCCCATGTTACATGATAATGATCTGATCTATACTAAGAAACTACATATGGTCCCTCGACATTATCAGACAGAGAAAAAGGAGAAGTCCACGACAATGTTGCCAAAGCCACTTCCAACGCAACAACCTGTATTCCACTCTAATGTCAGCATACCAGTGTCCTACCTCGTCCCAGCCTATGACAGGACAAGGGGAGACTCTGGACAGAAGCCACCTGTACACCCATTATTTCTATCCACCAACAGACTGCCTCAGTCCCAGATCAACCCTATGTACCGTCATGCCGCAACGGGACACACCAATGCTTCCCCTTATGAGCCTGCTCTCTACTCCTATCCCTATTCCATTCCTATGTTGAATCCCCATACTGGTTACAGCATCACTGGCGTGCATTATCCTCAAACTAGGCTGTGATAGCCCAGCCTACCTCTCGCAGAGCTTATAGACAATGTGACAAGTCAAATGGAGATAATGACAGTACCTGCTTCGTTCTAGACATTTTCTAAACTTGACTCGAACACAGCTGCATTCTATGTGAGTGATCAACAGAGAAACGTTGTTGTGATTATTATCCCGAGATGGGCTCCCCACTGTGGCAACTGATAGAATTGCACTAATAAAAAGGACTCATCTTTCTGTATTTGTAACAATAGCCCTCTGGTTTACTGCTATGTACGTTTTTTTATTGTATGATAAAATTATTTTGCATGGAAATAATATGAAACAACACAGATGTAATTGTTTATTCTGAATAAAATCTAAAATAATTCCTGTCTGATCCAAGTCTGCA

Function

NR:

description
AT-rich interactive domain-containing protein 5A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606012.2 False 2323 mRNA 0.49 7 28414737 28421614
XM_021606011.2 True 2314 mRNA 0.49 7 28414737 28425225

Neighbor

gene id symbol gene type direction distance location
LOC110525671 sld5 coding downstream 264 28403084 ~ 28414473 (-)
LOC110525668 LOC106585611 coding downstream 44721 28356038 ~ 28370016 (-)
LOC110525666 LOC106585610 coding downstream 61988 28313313 ~ 28352749 (-)
LOC110525665 LOC106585609 coding downstream 105010 28276663 ~ 28309727 (-)
LOC118964856 NA coding downstream 141015 28266817 ~ 28273722 (-)
dbnlb dbnl coding upstream 7134 28430078 ~ 28448183 (-)
ube2d4 UBE2D4 coding upstream 30365 28455590 ~ 28467865 (-)
zgc:153044 dus18 coding upstream 127039 28552264 ~ 28556013 (-)
LOC110525678 LOC106585621 coding upstream 564182 28989407 ~ 29010716 (-)
LOC110525679 LOC106585622 coding upstream 597983 29023208 ~ 29070012 (-)
G492982 NA non-coding downstream 5458 28409065 ~ 28409279 (-)
G492979 NA non-coding downstream 8413 28406044 ~ 28406324 (-)
G492902 LOC106585347 non-coding downstream 12484 28401868 ~ 28402253 (-)
G492963 NA non-coding downstream 34825 28379660 ~ 28379912 (-)
G492960 NA non-coding downstream 37506 28376967 ~ 28377231 (-)
G492986 NA non-coding upstream 539 28425764 ~ 28425969 (-)
G492994 NA non-coding upstream 26265 28451490 ~ 28451787 (-)
G493001 NA non-coding upstream 44763 28469988 ~ 28470245 (-)
G493040 NA non-coding upstream 89690 28514915 ~ 28515918 (-)
LOC110525655 LOC106585601 other downstream 579435 27827231 ~ 27885634 (-)
LOC110525653 NA other downstream 677759 27734995 ~ 27737024 (-)
G491539 NA other downstream 1170544 27216607 ~ 27244193 (-)
G491291 NA other downstream 1547579 26824867 ~ 26867158 (-)
LOC110525619 LOC106585557 other downstream 1863110 26481087 ~ 26551627 (-)
G494389 LOC106585296 other upstream 985990 29411215 ~ 29415314 (-)
LOC110525681 hectd4 other upstream 1053430 29411204 ~ 29483533 (-)
LOC110525684 LOC106585295 other upstream 1077028 29502192 ~ 29520980 (-)
G494542 NA other upstream 1250098 29675323 ~ 29675573 (-)
LOC110525714 LOC106585251 other upstream 2101461 30526034 ~ 30527686 (-)

Expression


Co-expression Network