ube2d4 (UBE2D4)


Basic Information

Item Value
gene id ube2d4
gene name UBE2D4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28455590 ~ 28467865 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606018.2
agtggaaggagagagggggtgagaacgTTCTTATATTATACCTCAGTGGATGAGAAAGCTAGCCAACCTTCTACCGTGGAAACTACAGTTATATTCGAAAGATCCCACGATAGTTACATTATTTATATACATAAAGTAACTGGTTTGAAAAACATCGTAATTTAACCCAAATTATCTGTGGCAGTGTATTAGAGAGACATATCTAATTAAACGAGCAATGGCGTTGAAAAGAATTCAAAAGGAACTGACAGATTTGCAGAGGGATCCGCCTGCACAGTGCTCAGCGGGACCAGTTGGAGATGATTTGTTTCACTGGCAGGCGACAATAATGGGTCCGAATGACAGTCCTTATCAGGGAGGGGTGTTCTTTTTGACTATACACTTCCCTACAGATTACCCCTTCAAACCACCaaagGTTGCGTTCACGACAAAGATCTACCACCCCAATATCAACAGTAATGGAAGCATTTGTCTGGATATATTGAGATCTCAATGGTCGCCTGCACTCACTGTATCAAAAGTTCTCTTGTCAATCTGCTCTCTGCTTTGCGATCCGAACCCAGATGACCCTCTTGTACCAGAGATTGCACACACCTACAAAGCTGACAGGGAAAAGTACAACAGACTAGCAAGAGAATGGACACAGAAGTATGCAATGTGAGAATGCCTGTGAAATGAAAACACTAAAAGAAGAAACACATGTTTAATATTAACACAAGGCAAACGAACAAGAGGGGAAACATAACTACACACTCTGGTTGGAGAAGGAAGCGATAAAATAAGGGACAGTGCAACCTGGCTGCTAAGTGCCGAGCTGCTGCCATGTGCCATTCTTCATGACTTGTATGGATCAGCTGAGCAAGGCCTAAGGGACTCCTGAAAGCACTCCCTTATGGAATACTGGAACCTCCCCATAGTCCAGACCACACCCTGACTTTAACTATTACTACTTCTATTGTGACTATTATTATCAGTGTTACTATTCATATTCTTATGATCActtgttattataatgatatcaTTGTGTTATTCTACTGAATGCTGAAACATTGGGTTTTGAATTTGGAGGGGACTAGTTAGCAGCTTGGTTCGCACTCCTTTCAAAGGTACTTTCTTTGCCCCTCTGAATGTCTTGTATTACTGTATGTTTATGTATTCCGTGGCCTTGCTGTATTATTGTAACAACCTCCTCTCAGACGTTAGAAGTGCAATTGAGTTGGAGTGCTCAGCACATAAAGGTGCATGGCTATATGCAGCAGCGTGGTTCAATGGCTCACTAAGACTCTGGAGATGGTTCTACCCAAACTCTCACACCCGGACATAATGTGAGACGATTCAGACAGTCATTCTGTATCCCCCTGAGCCAATTAATTTTATCCGTCAATGTATTTGGAAATGTCCCAAATGCAGTGACAGGTGGTCCTTGGAGAGGTGCTATCAAGGTGAGCTGACCTGGGTTGGACTGGCATTTGTGCTCATGGGCAAGAGACCAGGGAGAAAGTTCTGGAACCTCTACCACGTTTCTCACCTGTGTCGTCTATGTCCCTGCTTCTTGTCCTAGATCCATCCAGGGCTAGCATCTTACTTCATAAAATCCTACTGTAAGGTAGCACTTAAACCCTGGTAAAGCTCATCTCTTGAGTTTAACTACTCCCAGCCATACAGTTGAGTACACGCATAGCGTAACAGAATGTAAACTTGTGAGATTGGGATGGTTCATGAGGCTGGCGTTAGTGCAACCCTGTAAATACAGTAGCTCAGGTATATATTGAACTCACCTGTCTGAAAGGGCACTGTAGTGACCTGTGATGTGATGAAAATGACCAGATCTGTGTTGCACACTGACATGCTGCTTTAATCCAGAAGTTGTCTTTGGAGACTTTATCTGACATGGGTCATTCATTAGCTTTCCCTACTCAACTTCTCGCCGTTATCACAGATTGTTTTACTGTACAACACAATGATGTGAATGTTTTCAAACTGTTTTTGTTCATACATGCTATTGCTTTGAATATGCCATTGGTTAAAACTGGAGTCATTTTTAATTTAGATGGGAGCTTGAAAATACGTTCTTTAATGACAACTGTTGCAGATCTATGAATGAACATGTAGTTTTTTGTTCAAGTGAGTAACTTTTTCATCTTTTGTTTATTGTGAAGTTTCATTAGGTGTttcacatgtttcccatgccttTTACATCTTAACATGAGCTGTAACCTGGGTCATGCCAGCTGCATATTTGTTTTAGCACATGTCTTGAGATTTTGTTCTTATCATTGGAACTTTACTTTCTCTTTATTTTTAGAGGGTCCACAATAGTGCACATAGGCAATACATTTGTAACCTAGTATTCTGCAAGCTTGATTGTAGTTTTTTTTGTCACTAAAATGACCACCGTTGTGATTAATCTTGCATTAGTAATATCACATTTGAAGTAAACATAATCCAGTGGAGGTGCTGGACTAGTTAGACTGCATCTGTCTTGAGCTATAAATTGTCTGTTGCCATGGAAAGGGAATAAAAAGTGTGGGGGGGGGATATGAGAAATTTGGTCATCGAAACGCTTAATGGATTTAGTGAAAGATCATTTAGGCTGATTGGGGTGGAAAAGAGGTTGTACTCTAGTCTACACTATACTGTAGCCTGGTTTTGATTTAGGAGCCCGATGCATACTGTCATTATGAATTACATTTAGAATTGGTCATGAGGCTATGATTTTGACACACTGCTTTTTCACAATTGTTCTACAATTTAGCAGCAACGAATTGAATATCCACTGACTACAGTCAATCATCTGGCAGTCAAACCATTTCTTAAAAAGACTGAGGCAGTGAGTAATGCCACTGGACAAAACGTATTTCTTCAGCTTGCTTGATTTTGCGCCATATATGGCTTTGTTTGGTTATTTAGTTTTGTAATCTGTCTTCCAGTTGTCCGTTTTGTACGCAGTCAGCCTCAATCCATCAAATGTTTCTTTCAGTATGACATCCTTGTTTGATCCAAAGAGATACAAACTGAATGATCTCATTGGTCCAATGGGTTCTTAATGGAGGTCATGATAGGCAGCTTGGCATGCTTTGCACTCTGGAGAACATTTTCACAACCATTTGTCAGATATCAGGGATTTCTTTACAGTTCATTTGCCTGACACCTCTGACAAAATCTTAGCCTTAACCATCATTTTGTGTATAGATACTGTAAATTGCTATCAGGGCTAGTTTCCCCTAAAGGGAAATCAATTTAATTTTATCACTAGAGACTTGCAATTGATATGTAAATGGGACAACTAATTTTTTTAATGTACAGCCTTGCTAACTTGAAATTCAGGACCAGCCTTCATAAATAAATGCATCTCGATTTTCTAGGTATGTCATTAAGACTTCCCATCCCCATAACAAATTATCTCCCCTTGCATACACACATGACAGAAAATAACAATTGGGTtgtcaatttaaaaaataaaactcctttttgttttatg
>XM_036979778.1
AGGGTCAGCTGTCCAATGCATTTCTCGTCTCGCGATATTCCGGAACTCCTCTCCAGCAgcagtggaaggagagaggggGAACTGACAGATTTGCAGAGGGATCCGCCTGCACAGTGCTCAGCGGGACCAGTTGGAGATGATTTGTTTCACTGGCAGGCGACAATAATGGGTCCGAATGACAGTCCTTATCAGGGAGGGGTGTTCTTTTTGACTATACACTTCCCTACAGATTACCCCTTCAAACCACCaaagGTTGCGTTCACGACAAAGATCTACCACCCCAATATCAACAGTAATGGAAGCATTTGTCTGGATATATTGAGATCTCAATGGTCGCCTGCACTCACTGTATCAAAAGTTCTCTTGTCAATCTGCTCTCTGCTTTGCGATCCGAACCCAGATGACCCTCTTGTACCAGAGATTGCACACACCTACAAAGCTGACAGGGAAAAGTACAACAGACTAGCAAGAGAATGGACACAGAAGTATGCAATGTGAGAATGCCTGTGAAATGAAAACACTAAAAGAAGAAACACATGTTTAATATTAACACAAGGCAAACGAACAAGAGGGGAAACATAACTACACACTCTGGTTGGAGAAGGAAGCGATAAAATAAGGGACAGTGCAACCTGGCTGCTAAGTGCCGAGCTGCTGCCATGTGCCATTCTTCATGACTTGTATGGATCAGCTGAGCAAGGCCTAAGGGACTCCTGAAAGCACTCCCTTATGGAATACTGGAACCTCCCCATAGTCCAGACCACACCCTGACTTTAACTATTACTACTTCTATTGTGACTATTATTATCAGTGTTACTATTCATATTCTTATGATCActtgttattataatgatatcaTTGTGTTATTCTACTGAATGCTGAAACATTGGGTTTTGAATTTGGAGGGGACTAGTTAGCAGCTTGGTTCGCACTCCTTTCAAAGGTACTTTCTTTGCCCCTCTGAATGTCTTGTATTACTGTATGTTTATGTATTCCGTGGCCTTGCTGTATTATTGTAACAACCTCCTCTCAGACGTTAGAAGTGCAATTGAGTTGGAGTGCTCAGCACATAAAGGTGCATGGCTATATGCAGCAGCGTGGTTCAATGGCTCACTAAGACTCTGGAGATGGTTCTACCCAAACTCTCACACCCGGACATAATGTGAGACGATTCAGACAGTCATTCTGTATCCCCCTGAGCCAATTAATTTTATCCGTCAATGTATTTGGAAATGTCCCAAATGCAGTGACAGGTGGTCCTTGGAGAGGTGCTATCAAGGTGAGCTGACCTGGGTTGGACTGGCATTTGTGCTCATGGGCAAGAGACCAGGGAGAAAGTTCTGGAACCTCTACCACGTTTCTCACCTGTGTCGTCTATGTCCCTGCTTCTTGTCCTAGATCCATCCAGGGCTAGCATCTTACTTCATAAAATCCTACTGTAAGGTAGCACTTAAACCCTGGTAAAGCTCATCTCTTGAGTTTAACTACTCCCAGCCATACAGTTGAGTACACGCATAGCGTAACAGAATGTAAACTTGTGAGATTGGGATGGTTCATGAGGCTGGCGTTAGTGCAACCCTGTAAATACAGTAGCTCAGGTATATATTGAACTCACCTGTCTGAAAGGGCACTGTAGTGACCTGTGATGTGATGAAAATGACCAGATCTGTGTTGCACACTGACATGCTGCTTTAATCCAGAAGTTGTCTTTGGAGACTTTATCTGACATGGGTCATTCATTAGCTTTCCCTACTCAACTTCTCGCCGTTATCACAGATTGTTTTACTGTACAACACAATGATGTGAATGTTTTCAAACTGTTTTTGTTCATACATGCTATTGCTTTGAATATGCCATTGGTTAAAACTGGAGTCATTTTTAATTTAGATGGGAGCTTGAAAATACGTTCTTTAATGACAACTGTTGCAGATCTATGAATGAACATGTAGTTTTTTGTTCAAGTGAGTAACTTTTTCATCTTTTGTTTATTGTGAAGTTTCATTAGGTGTttcacatgtttcccatgccttTTACATCTTAACATGAGCTGTAACCTGGGTCATGCCAGCTGCATATTTGTTTTAGCACATGTCTTGAGATTTTGTTCTTATCATTGGAACTTTACTTTCTCTTTATTTTTAGAGGGTCCACAATAGTGCACATAGGCAATACATTTGTAACCTAGTATTCTGCAAGCTTGATTGTAGTTTTTTTTGTCACTAAAATGACCACCGTTGTGATTAATCTTGCATTAGTAATATCACATTTGAAGTAAACATAATCCAGTGGAGGTGCTGGACTAGTTAGACTGCATCTGTCTTGAGCTATAAATTGTCTGTTGCCATGGAAAGGGAATAAAAAGTGTGGGGGGGGGATATGAGAAATTTGGTCATCGAAACGCTTAATGGATTTAGTGAAAGATCATTTAGGCTGATTGGGGTGGAAAAGAGGTTGTACTCTAGTCTACACTATACTGTAGCCTGGTTTTGATTTAGGAGCCCGATGCATACTGTCATTATGAATTACATTTAGAATTGGTCATGAGGCTATGATTTTGACACACTGCTTTTTCACAATTGTTCTACAATTTAGCAGCAACGAATTGAATATCCACTGACTACAGTCAATCATCTGGCAGTCAAACCATTTCTTAAAAAGACTGAGGCAGTGAGTAATGCCACTGGACAAAACGTATTTCTTCAGCTTGCTTGATTTTGCGCCATATATGGCTTTGTTTGGTTATTTAGTTTTGTAATCTGTCTTCCAGTTGTCCGTTTTGTACGCAGTCAGCCTCAATCCATCAAATGTTTCTTTCAGTATGACATCCTTGTTTGATCCAAAGAGATACAAACTGAATGATCTCATTGGTCCAATGGGTTCTTAATGGAGGTCATGATAGGCAGCTTGGCATGCTTTGCACTCTGGAGAACATTTTCACAACCATTTGTCAGATATCAGGGATTTCTTTACAGTTCATTTGCCTGACACCTCTGACAAAATCTTAGCCTTAACCATCATTTTGTGTATAGATACTGTAAATTGCTATCAGGGCTAGTTTCCCCTAAAGGGAAATCAATTTAATTTTATCACTAGAGACTTGCAATTGATATGTAAATGGGACAACTAATTTTTTTAATGTACAGCCTTGCTAACTTGAAATTCAGGACCAGCCTTCATAAATAAATGCATCTCGATTTTCTAGGTATGTCATTAAGACTTCCCATCCCCATAACAAATTATCTCCCCTTGCATACACACATGACAGAAAATAACAATTGGGTtgtcaatttaaaaaataaaactcctttttgttttatg

Function

symbol description
ube2d4 Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in protein K48-linked ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human UBE2D4 (ubiquitin conjugating enzyme E2 D4 (putative)).

NR:

description
ubiquitin-conjugating enzyme E2 D4

GO:

id name namespace
GO:0035519 protein K29-linked ubiquitination biological_process
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0085020 protein K6-linked ubiquitination biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0044314 protein K27-linked ubiquitination biological_process
GO:0070979 protein K11-linked ubiquitination biological_process
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606018.2 False 3481 mRNA 0.40 7 28455590 28467805
XM_036979778.1 True 3318 mRNA 0.41 7 28455590 28467865

Neighbor

gene id symbol gene type direction distance location
dbnlb dbnl coding downstream 7407 28430078 ~ 28448183 (-)
arid5a LOC106585613 coding downstream 30365 28414737 ~ 28425225 (-)
LOC110525671 sld5 coding downstream 41117 28403084 ~ 28414473 (-)
LOC110525668 LOC106585611 coding downstream 85574 28356038 ~ 28370016 (-)
LOC110525666 LOC106585610 coding downstream 102841 28313313 ~ 28352749 (-)
zgc:153044 dus18 coding upstream 84399 28552264 ~ 28556013 (-)
LOC110525678 LOC106585621 coding upstream 521542 28989407 ~ 29010716 (-)
LOC110525679 LOC106585622 coding upstream 555343 29023208 ~ 29070012 (-)
LOC110526490 LOC106580375 coding upstream 602851 29070716 ~ 29398888 (-)
LOC110525681 hectd4 coding upstream 943339 29411204 ~ 29483533 (-)
G492994 NA non-coding downstream 3803 28451490 ~ 28451787 (-)
G492986 NA non-coding downstream 29621 28425764 ~ 28425969 (-)
G492982 NA non-coding downstream 46311 28409065 ~ 28409279 (-)
G492979 NA non-coding downstream 49266 28406044 ~ 28406324 (-)
G493001 NA non-coding upstream 2123 28469988 ~ 28470245 (-)
G493040 NA non-coding upstream 47050 28514915 ~ 28515918 (-)
G493053 NA non-coding upstream 71711 28539576 ~ 28539825 (-)
G493062 NA non-coding upstream 96514 28564379 ~ 28565133 (-)
G493036 NA non-coding upstream 97335 28565200 ~ 28567909 (-)
LOC110525655 LOC106585601 other downstream 620288 27827231 ~ 27885634 (-)
LOC110525653 NA other downstream 718612 27734995 ~ 27737024 (-)
G491539 NA other downstream 1211397 27216607 ~ 27244193 (-)
G491291 NA other downstream 1588432 26824867 ~ 26867158 (-)
LOC110525619 LOC106585557 other downstream 1903963 26481087 ~ 26551627 (-)
G494389 LOC106585296 other upstream 943350 29411215 ~ 29415314 (-)
LOC110525684 LOC106585295 other upstream 1034388 29502192 ~ 29520980 (-)
G494542 NA other upstream 1207458 29675323 ~ 29675573 (-)
LOC110525714 LOC106585251 other upstream 2058821 30526034 ~ 30527686 (-)

Expression


Co-expression Network