LOC110525685 (LOC106585294)


Basic Information

Item Value
gene id LOC110525685
gene name LOC106585294
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29526783 ~ 29575598 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606028.2
AAGTATAACCAGGTAAGAGTCCACTACTTGAGCATCAATGATAGCCTACATGGATGCAGGGGTCTCCTTCCCAGGGTACCAAGGGCTTACCACTGAGGAGAGGAGCCCACGCAGGGCGTATAGTGTGGAGATTGGTCCTGGCGACTGTGTTATAGGAATTGAGAAGCAccccttgacaaaaaaaaatggcTTGTGACAGGCGTTGCATGCGCAATGAACGGTTTGCGGTTGATTCCAGTACAGTATAAAATTAGTCCGCATCATTCCCTGACATCTTCCTTCAATAGAGGGCTGAAATCTCAGTTCCCTGCTATCATCAGATTTGGACAGAGGAGACTCTATCTGAGCCAGGCTACTGTGGAAAGAGGATTGTTGACCCTCCCTACCCACCCTGCTCATTCCCTGAGGACCCACCCTGTTGCTGGTTGGGTGTCGCTCCCCGCTCTGCCTGGTGGTGGCCCTCGGGAGCTTTGAGCGCATAGAGAGTTCAATAGTGCAGCAGCCATGACGAACGCAGTGATGGGCGGTAGCTCGGACCGCTGGGTGCCCAACGATAGGCAGATGAGCATGCATGCCAATGATAAGGAACAGGGCAACTGGACCAACCAGGCCAGGCCTGGTCCCGACGCTCCGGACCTGACTGACGAGGAGAAGGAGATCATTAACGGTGTGATCGCCCGTGCTGAGAAGATGGAGGCCATGGAGCAGGAGAGAATTGGGCGCCTGGTGAACCGTCTAGATGACATGAAGAAGACGGTGTGTGGGGACGGGGTGAACCGCTGTCTGCTGTGTGGGGAGCAGCTGGGTGTTCCAGGGGTCAGCTCAGTGGTTTGTGAGGACTGCAAAAAGCACATGTGCACCAAGTGTGGAGTGCAGAACGGCAGCCGGTCGCGTTCTGTGTGGCTCTGCAAGATCTGCAGCGAACAGCGAGAGGTGTGGAAGCGATCTGGTGCCTGGTTCTTTAAAGGCTTTCCTAAGCAGTTCCTGCCCTCGCCCATGCCCATCTCCAAGTCCAAAGAGTCAAGTGCCCAGCGAGCCCCAGAGCTAGCATCATCTGACCCCAGGGCTGCAGCTGGTCATCCCCAATCACAGGCCAGAGcAGGACCAGAGGAACTGGGGCATGCTGGCAAACCACCTGTGGCCCCTAAGCCGTCAGATGTTCGCATGGCCACTGGTGGGACTGGTCATGGTTACAATGAGGGAGGTGCTCAGAACAGCCCAGTGGTGCTGCAGAAGGCTGTTCCAGTCCAGAGCTCCAGGCCCCCTCCAGCAGCATCGGCCCAGCAGGCTCCACTGGAGACGGAGGGAGGTGGCTACTCCACTAGCGGTGCtccagtggaggagagagtgcCTCCTGCATtgcgggaggagaggagacagccaaCCACCTACAACCCCGTTCCTGCTCGACAACAAGCCCCTCCGCCTGAGGAGGAGGATGCAAACAGCTATGACTCAGATGAGGCCACCACTCTGGGCGGCTTGGAGTTCAGCTTGCTTTATGAGCAGGAGAACAACAGTCTCCACTGTAGCATCCTCAAAGCCAAGGGACTGAAGCCCATGGACTCCAACGGACTGGCTGATCCCTATGTCAAGCTGCATCTATTGCCAGGGGCCAGTAAGTCCAACAAGCTACGCACCAAGACCCTGAGAAACACCCGTAACCCTGCCTGGAACGAGACCCTGGTCTACCACGGACTCACAGACGAGGACATGCAGCGCAAGACTCTCAGGATCTCTGTCTGTGATGAGGACAAGTTTGGGCATAATGAGTTTATCGGAGAAACTCGCATTGCGCTGAAGAAACTCAAGATCAACCAGAAAAAAAACTTCAACGTGTGTCTTGAGAGAGTTGTCCCTACAAAGAAGACTGCAACAGCTGGAGGGGCTCGAGGCATTTCGCTCTATGAGGATGAGGGTGGGAAGGAGGTTGGAGATGTGGAGGAGCGGGGTCGTATCTTGATCTCCCTCACGTACAGCACCCAGCAGAATCGTCTCCTCGTGGGTGTGGTGCGCTGTGTTCACCTGGCCGCCATGGATGCCAATGGATACTCTGACCCATTTGTCGAAATATGCCTGAGACCTGATATGGGGAAGAAGGCCAAGAACAAAACAAATATCAAGAAGAAGACCCTAAACCCAGAGTACAACGAGGAATTTAGCTATGACATCAAGCACAGCGACCTGGCTAAGAAGACCCTGGACATCTCAGTGTGGGACTACGACATTGGGAAATCCAACGATTACATCGGTGGGTGCCAGCTGGGCATCACAGCCAAAGGGGAGCGGCTGAAGCACTGGTATGAGTGCCTGAAGAACAAGGACAAGAAGATAGAGCGCTGGCACACCCTGTTGAATGAGAATCCTGTCAACAGCAACTAACCCCTATTAGAATGAGCAaagtcctcatcaacactcagcCCCCTCTCCTTTCTCACATTACCCTCTCTACCTTCCCCAAGAACCTTTAATATTGGACTAACCAGTAGTCTTCCTGTCTGGCTGTCTGCATTCTTTCCTGCCCTCAACCCAACCCACCACATGCACCTTTCCATCCTCCCCTGTTGTCCCAGATGTGATATTCCCATCTCATGTCTCTCCCCCTTTACTGAGACTTATCTGGAAATACTCCTCCAGAGGCAAAACATGGTATACTTTCAAATCATCCTTCAAAAACAACTTAGGGATTCAACAATTTAaggcaaaaaaaaatacataaatacttTTGAAGATAATAAAAACAACAGCTTGACATTGCATTATATGGTTGCATTGAGATAATCATAGCAGTTGATGATGTTATATATTGAATTTGACACATCCTAAAGAAAACCAATATTGAAATGCACTAGCACAAAAGATGTTGAAGCAATATGTAATTCTATGTGGGATTACAGCTGCAGCACCCATTGAACTATGAAGTTCATTAGACTGGCAGGTTGTAATCCTTGATTTCTTGTAAAATGACATCATGCAGCAGTATTATTACCACTTGTATGAGCATGCAAAACCACATGAAAACACACGAGGACCCACAGCTGCCCTCTGAACTATTTCAAATGTTCCAAAAGTCACATGTTTATTTAATGATATCTAATGAATATTATGGCATTCTCATGAAGAAGGTTTATATGCTGCAGAATTTCTGAAGTTAAAGATAAAAAATAATCTGGACTCTGGGAATGATTCACAAAAAAATGgacaaaaaacatatatttattattttttaatatattACATACTAAATAGGTAATTCAAGTAAatcatatgttttatttatttcagaatCAGTTTAAATATTTGGAATGATAGCACTCCTATTAGAAGAAACTGTGCTCACTTCATGCCAAGTGTTCACTTTGTCCTTATTTGAGTCATGTTTATAGAGGTAGAGGGAACATGTTCAATTTTTGATGAGAATGTTTGCACTGAAAAGTTGAAAATCTGGTTCAGTTCTTTGTTTACagtgaaggaagagaggagacaggaaaaCATTATTTCCCTGGCGAGTAATGAGAAGTATACTATGGCAGGTGTGGTCTAAATGAATGTTTACTGAGGTTTTTTACTGACTGACATTTTTACATTGAATGCACATGATCAGATTTTTCACTGACACTTAAAGCCTGCTCCACCTTAGTCACATTAAATAAGACAACATGGGTAAGGCTATGTCATAAGTAAATGTGCTGCTTGCATGCACTGTGCTCGTGACCCTTGTGTTTTCTGTGGCTGGAGCAGTCACACACCCCAACCCGCTCCTCCCCACAATGCACCCCCCTTTACCCACTCTGGCCGCCTCCATTCATGCGTCATCCTTTTTTGCTGCATCATTCACTCAAAGTTTTGGCGGGCGGCTGTTGACCAATTACCGTAATTCAAAGAAAGCACATCTTATACCATGGAATGACCTCAATTTATACAGCTGTTTGCAAGTTTCTCAAAAAAAACTATGCATGAGAGATCTTGTGGTTCATGATATATACATTGACTTAAGAAACAAATGATATTGTAATTTGATGATTTGTCTCTACCCCTTAACATTGGTCCAAATGCTTTTTTTTAAACACTGAAGTCCACAGCAACATACATGTATTTATGCAGCATGAATATCAGGACTATTATTATCATTAGGCTAACAATGGATAAATGAATTGATGTAGCGGGCTACTTTAGACCCTCTTCAGAGCATCCTCAGCTTGGTAATGTGACAGAGATGAGAGCTAGGACCCTGTACACAGAGCTCAGATAATGCTTAGAGGGCTGATTACTGGGCGTAAACAGTCAGCACATTAACAAATGGATCTCACCGACCAGTTCCTGAAGGTAGACGATTAAAGGAGATTCATCTCATCTATAGAGTGATGCATTTTCACCAAGTGCTCTGTCTCCTCCTTTGATGGGTAAAAACAGGGGCTCCCACAGCCATGAGAGCCTCTGCTGAACTGTATTGTCTTGCTGTCCACCAGTAGCTACAAtttcaacattattttgttgcGTATGCACTTGGTTTTCACTGGTTCTACTACGGTACTATTGTAGCCTACCTGTTCTGTTTTGTGACCAGTTTAGTGGTCTTTAATCTTAATTCGTTTCTATTCTCTTTTCTGGATAGTAAGTATCGCTAAAGAGGATACAACTGTTCTCCGTTTTGTTCTGCCTACTCTATTTAAATGAATTGTTTGTTGGTTTTATTTATGTCAATTGTAAATAAGTAGTGCATGGACTTGAGAGAAACAAAATATAAGTACCTGTGTATGTTTGCATGTAAAGATTTTACAAAGAGTTAGGTTTACACAGATCAATAAAAGCAAGGTCAGACTTGTGAGATCATTA
>XM_021606031.2
AAGTATAACCAGGTAAGAGTCCACTACTTGAGCATCAATGATAGCCTACATGGATGCAGGGGTCTCCTTCCCAGGGTACCAAGGGCTTACCACTGAGGAGAGGAGCCCACGCAGGGCGTATAGTGTGGAGATTGGTCCTGGCGACTGTGTTATAGGAATTGAGAAGCAccccttgacaaaaaaaaatggcTTGTGACAGGCGTTGCATGCGCAATGAACGGTTTGCGGTTGATTCCAGTACAGTATAAAATTAGTCCGCATCATTCCCTGACATCTTCCTTCAATAGAGGGCTGAAATCTCAGTTCCCTGCTATCATCAGATTTGGACAGAGGAGACTCTATCTGAGCCAGGCTACTGTGGAAAGAGGATTGTTGACCCTCCCTACCCACCCTGCTCATTCCCTGAGGACCCACCCTGTTGCTGGTTGGGTGTCGCTCCCCGCTCTGCCTGGTGGTGGCCCTCGGGAGCTTTGAGCGCATAGAGAGTTCAATAGTGCAGCAGCCATGACGAACGCAGTGATGGGCGGTAGCTCGGACCGCTGGGTGCCCAACGATAGGCAGATGAGCATGCATGCCAATGATAAGGAACAGGGCAACTGGACCAACCAGGCCAGGCCTGGTCCCGACGCTCCGGACCTGACTGACGAGGAGAAGGAGATCATTAACGGTGTGATCGCCCGTGCTGAGAAGATGGAGGCCATGGAGCAGGAGAGAATTGGGCGCCTGGTGAACCGTCTAGATGACATGAAGAAGACGGTGTGTGGGGACGGGGTGAACCGCTGTCTGCTGTGTGGGGAGCAGCTGGGTGTTCCAGGGGTCAGCTCAGTGGTTTGTGAGGACTGCAAAAAGCACATGTGCACCAAGTGTGGAGTGCAGAACGGCAGCCGGTCGCGTTCTGTGTGGCTCTGCAAGATCTGCAGCGAACAGCGAGAGGTGTGGAAGCGATCTGGTGCCTGGTTCTTTAAAGGCTTTCCTAAGCAGTTCCTGCCCTCGCCCATGCCCATCTCCAAGTCCAAAGAGTCAAGTGCCCAGCGAGCCCCAGAGCTAGCATCATCTGACCCCAGGGCTGCAGCTGGTCATCCCCAATCACAGGCCAGAGGACCAGAGGAACTGGGGCATGCTGGCAAACCACCTGTGGCCCCTAAGCCGTCAGATGTTCGCATGGCCACTGGTGGGACTGGTCATGGTTACAATGAGGGAGGTGCTCAGAACAGCCCAGTGGTGCTGCAGAAGGCTGTTCCAGTCCAGAGCTCCAGGCCCCCTCCAGCAGCATCGGCCCAGCAGGCTCCACTGGAGACGGAGGGAGGTGGCTACTCCACTAGCGGTGCtccagtggaggagagagtgcCTCCTGCATtgcgggaggagaggagacagccaaCCACCTACAACCCCGTTCCTGCTCGACAACAAGCCCCTCCGCCTGAGGAGGAGGATGCAAACAGCTATGACTCAGATGAGGCCACCACTCTGGGCGGCTTGGAGTTCAGCTTGCTTTATGAGCAGGAGAACAACAGTCTCCACTGTAGCATCCTCAAAGCCAAGGGACTGAAGCCCATGGACTCCAACGGACTGGCTGATCCCTATGTCAAGCTGCATCTATTGCCAGGGGCCAGTAAGTCCAACAAGCTACGCACCAAGACCCTGAGAAACACCCGTAACCCTGCCTGGAACGAGACCCTGGTCTACCACGGACTCACAGACGAGGACATGCAGCGCAAGACTCTCAGGATCTCTGTCTGTGATGAGGACAAGTTTGGGCATAATGAGTTTATCGGAGAAACTCGCATTGCGCTGAAGAAACTCAAGATCAACCAGAAAAAAAACTTCAACGTGTGTCTTGAGAGAGTTGTCCCTACAAAGAAGACTGCAACAGCTGGAGGGGCTCGAGGCATTTCGCTCTATGAGGATGAGGGTGGGAAGGAGGTTGGAGATGTGGAGGAGCGGGGTCGTATCTTGATCTCCCTCACGTACAGCACCCAGCAGAATCGTCTCCTCGTGGGTGTGGTGCGCTGTGTTCACCTGGCCGCCATGGATGCCAATGGATACTCTGACCCATTTGTCGAAATATGCCTGAGACCTGATATGGGGAAGAAGGCCAAGAACAAAACAAATATCAAGAAGAAGACCCTAAACCCAGAGTACAACGAGGAATTTAGCTATGACATCAAGCACAGCGACCTGGCTAAGAAGACCCTGGACATCTCAGTGTGGGACTACGACATTGGGAAATCCAACGATTACATCGGTGGGTGCCAGCTGGGCATCACAGCCAAAGGGGAGCGGCTGAAGCACTGGTATGAGTGCCTGAAGAACAAGGACAAGAAGATAGAGCGCTGGCACACCCTGTTGAATGAGAATCCTGTCAACAGCAACTAACCCCTATTAGAATGAGCAaagtcctcatcaacactcagcCCCCTCTCCTTTCTCACATTACCCTCTCTACCTTCCCCAAGAACCTTTAATATTGGACTAACCAGTAGTCTTCCTGTCTGGCTGTCTGCATTCTTTCCTGCCCTCAACCCAACCCACCACATGCACCTTTCCATCCTCCCCTGTTGTCCCAGATGTGATATTCCCATCTCATGTCTCTCCCCCTTTACTGAGACTTATCTGGAAATACTCCTCCAGAGGCAAAACATGGTATACTTTCAAATCATCCTTCAAAAACAACTTAGGGATTCAACAATTTAaggcaaaaaaaaatacataaatacttTTGAAGATAATAAAAACAACAGCTTGACATTGCATTATATGGTTGCATTGAGATAATCATAGCAGTTGATGATGTTATATATTGAATTTGACACATCCTAAAGAAAACCAATATTGAAATGCACTAGCACAAAAGATGTTGAAGCAATATGTAATTCTATGTGGGATTACAGCTGCAGCACCCATTGAACTATGAAGTTCATTAGACTGGCAGGTTGTAATCCTTGATTTCTTGTAAAATGACATCATGCAGCAGTATTATTACCACTTGTATGAGCATGCAAAACCACATGAAAACACACGAGGACCCACAGCTGCCCTCTGAACTATTTCAAATGTTCCAAAAGTCACATGTTTATTTAATGATATCTAATGAATATTATGGCATTCTCATGAAGAAGGTTTATATGCTGCAGAATTTCTGAAGTTAAAGATAAAAAATAATCTGGACTCTGGGAATGATTCACAAAAAAATGgacaaaaaacatatatttattattttttaatatattACATACTAAATAGGTAATTCAAGTAAatcatatgttttatttatttcagaatCAGTTTAAATATTTGGAATGATAGCACTCCTATTAGAAGAAACTGTGCTCACTTCATGCCAAGTGTTCACTTTGTCCTTATTTGAGTCATGTTTATAGAGGTAGAGGGAACATGTTCAATTTTTGATGAGAATGTTTGCACTGAAAAGTTGAAAATCTGGTTCAGTTCTTTGTTTACagtgaaggaagagaggagacaggaaaaCATTATTTCCCTGGCGAGTAATGAGAAGTATACTATGGCAGGTGTGGTCTAAATGAATGTTTACTGAGGTTTTTTACTGACTGACATTTTTACATTGAATGCACATGATCAGATTTTTCACTGACACTTAAAGCCTGCTCCACCTTAGTCACATTAAATAAGACAACATGGGTAAGGCTATGTCATAAGTAAATGTGCTGCTTGCATGCACTGTGCTCGTGACCCTTGTGTTTTCTGTGGCTGGAGCAGTCACACACCCCAACCCGCTCCTCCCCACAATGCACCCCCCTTTACCCACTCTGGCCGCCTCCATTCATGCGTCATCCTTTTTTGCTGCATCATTCACTCAAAGTTTTGGCGGGCGGCTGTTGACCAATTACCGTAATTCAAAGAAAGCACATCTTATACCATGGAATGACCTCAATTTATACAGCTGTTTGCAAGTTTCTCAAAAAAAACTATGCATGAGAGATCTTGTGGTTCATGATATATACATTGACTTAAGAAACAAATGATATTGTAATTTGATGATTTGTCTCTACCCCTTAACATTGGTCCAAATGCTTTTTTTTAAACACTGAAGTCCACAGCAACATACATGTATTTATGCAGCATGAATATCAGGACTATTATTATCATTAGGCTAACAATGGATAAATGAATTGATGTAGCGGGCTACTTTAGACCCTCTTCAGAGCATCCTCAGCTTGGTAATGTGACAGAGATGAGAGCTAGGACCCTGTACACAGAGCTCAGATAATGCTTAGAGGGCTGATTACTGGGCGTAAACAGTCAGCACATTAACAAATGGATCTCACCGACCAGTTCCTGAAGGTAGACGATTAAAGGAGATTCATCTCATCTATAGAGTGATGCATTTTCACCAAGTGCTCTGTCTCCTCCTTTGATGGGTAAAAACAGGGGCTCCCACAGCCATGAGAGCCTCTGCTGAACTGTATTGTCTTGCTGTCCACCAGTAGCTACAAtttcaacattattttgttgcGTATGCACTTGGTTTTCACTGGTTCTACTACGGTACTATTGTAGCCTACCTGTTCTGTTTTGTGACCAGTTTAGTGGTCTTTAATCTTAATTCGTTTCTATTCTCTTTTCTGGATAGTAAGTATCGCTAAAGAGGATACAACTGTTCTCCGTTTTGTTCTGCCTACTCTATTTAAATGAATTGTTTGTTGGTTTTATTTATGTCAATTGTAAATAAGTAGTGCATGGACTTGAGAGAAACAAAATATAAGTACCTGTGTATGTTTGCATGTAAAGATTTTACAAAGAGTTAGGTTTACACAGATCAATAAAAGCAAGGTCAGACTTGTGAGATCATTA

Function

NR:

description
rabphilin-3A-like isoform X2

GO: NA

KEGG:

id description
K19938 RPH3A; rabphilin-3A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606028.2 False 4836 mRNA 0.46 19 29526783 29575598
XM_021606031.2 True 4833 mRNA 0.46 19 29526783 29575598

Neighbor

gene id symbol gene type direction distance location
LOC110525684 LOC106585295 coding downstream 5803 29502192 ~ 29520980 (-)
LOC110525681 hectd4 coding downstream 43250 29411204 ~ 29483533 (-)
LOC110525683 NA coding downstream 111441 29414761 ~ 29415342 (-)
LOC110526490 LOC106580375 coding downstream 127895 29070716 ~ 29398888 (-)
LOC110525679 LOC106585622 coding downstream 456771 29023208 ~ 29070012 (-)
LOC110526522 LOC106585290 coding upstream 19818 29595416 ~ 29596809 (-)
LOC110525693 NA coding upstream 74605 29650203 ~ 29654088 (-)
LOC110525694 LOC106585282 coding upstream 130461 29706059 ~ 29754403 (-)
LOC110525696 LOC106585281 coding upstream 179304 29754902 ~ 29760372 (-)
LOC110525697 rsrc2 coding upstream 194326 29769924 ~ 29786928 (-)
G494404 NA non-coding downstream 62569 29463891 ~ 29464214 (-)
G494402 NA non-coding downstream 67201 29459281 ~ 29459582 (-)
G494401 NA non-coding downstream 71215 29455359 ~ 29455568 (-)
G494378 NA non-coding downstream 119067 29399840 ~ 29407716 (-)
G494496 NA non-coding upstream 35225 29610823 ~ 29611022 (-)
G494497 psmd9 non-coding upstream 40975 29616573 ~ 29623212 (-)
G494503 NA non-coding upstream 49442 29625040 ~ 29625323 (-)
G494504 NA non-coding upstream 49862 29625460 ~ 29625716 (-)
G494505 NA non-coding upstream 50894 29626492 ~ 29626703 (-)
G494389 LOC106585296 other downstream 111469 29411215 ~ 29415314 (-)
LOC110525655 LOC106585601 other downstream 1691481 27827231 ~ 27885634 (-)
LOC110525653 NA other downstream 1789805 27734995 ~ 27737024 (-)
G494542 NA other upstream 99725 29675323 ~ 29675573 (-)
LOC110525714 LOC106585251 other upstream 951088 30526034 ~ 30527686 (-)
G495554 NA other upstream 969804 30545402 ~ 30549450 (-)
G495560 NA other upstream 999520 30575118 ~ 30575573 (-)
G496772 NA other upstream 2085795 31661393 ~ 31661618 (-)

Expression


Co-expression Network