LOC110526522 (LOC106585290)


Basic Information

Item Value
gene id LOC110526522
gene name LOC106585290
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29595416 ~ 29596809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110526522
GTTGGTGAGACCATCCTGGGCCTGAGAGAGAATCTGACCCAGACCATTGGGTGTCTGGAGGAGGCGGACTCCTCTGTGGCTGTCTCGTCTGGTGGCAAACTGTTCCTCCGCTTCATCAGCCTCACATCACTGGAACACCCTGATCTCTCTCAATGCAAGAAAGCtatggtagagagaggagagctcTTTCTAAAGAAAATATCCCTTTCCAGGAGTAAAGTAGCAAAACTGTGCCATACCTTTATAAAGGATGGAGCTAAAATACTGACACACTCCTCCTCTCGGGTGGTTCTTAGGGTACTGGCGAGTGCAGCAGCCGACAAGAAACGCTTCATTGTCTATGTCACTGAGTCACAACCAGACTGCAAGGTACTGTGTATATTCTGAATTGGATAACACACCAATTAGACAATCTTATGTTTGTCCTTGGATGATACCAGTTACAACACATCATGGGTTACCCTGTGTTCTGCAACCCACTTGACAGATTGGCACATATCAACTGACTGTGTGATCAAAGGCTCACAACAAGCCTTTCTACGTTGTGGCAGAAAGCTTCACATTTGTCAGACTCTTCCCTCTAAACCAGCAAGATGTCCCAGACCGATTTAAGGTAAATGCACTAAAATATGGTCATTAACAttcatctttaatttacaatctgtagaaacggagaatagaaaggttcagaacttttgtcaAACATTCCAGCACAGTTAAAGTATATGGCAATTAtaaaatcaaaactggatggttttctgagatagatgggaggagtgagggtagctgaagggtgggactaaacaAATACAAATTAAAAAAGAGAGAACTAAATGTAAAATATAGTTTCCGTAAAGTGTAGTATGTagacggaacaaaaatataaatgccaaCAATTCCAATGATTTTGAGTTagaaggaaatcaatcaattgaaataaattaagccctaatctatggatttcacatgaatgggcaaGGGTGCAGCCATTGGTGGGACTGGGGAGCCAGGcagaatgagtttttctccacaaaagggctttattacagaaagaactactcctcagtttcattagctgttcgtgtggctggtctcagaccatcc

Function

NR:

description
PREDICTED: translation initiation factor eIF-2B subunit alpha-like

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110526522 True 1104 mRNA 0.42 3 29595416 29596809

Neighbor

gene id symbol gene type direction distance location
LOC110525685 LOC106585294 coding downstream 19818 29526783 ~ 29575598 (-)
LOC110525684 LOC106585295 coding downstream 74436 29502192 ~ 29520980 (-)
LOC110525681 hectd4 coding downstream 111883 29411204 ~ 29483533 (-)
LOC110525683 NA coding downstream 180074 29414761 ~ 29415342 (-)
LOC110526490 LOC106580375 coding downstream 196528 29070716 ~ 29398888 (-)
LOC110525693 NA coding upstream 53394 29650203 ~ 29654088 (-)
LOC110525694 LOC106585282 coding upstream 109250 29706059 ~ 29754403 (-)
LOC110525696 LOC106585281 coding upstream 158093 29754902 ~ 29760372 (-)
LOC110525697 rsrc2 coding upstream 173115 29769924 ~ 29786928 (-)
LOC118965073 NA coding upstream 201700 29798141 ~ 29811783 (-)
G494404 NA non-coding downstream 131202 29463891 ~ 29464214 (-)
G494402 NA non-coding downstream 135834 29459281 ~ 29459582 (-)
G494401 NA non-coding downstream 139848 29455359 ~ 29455568 (-)
G494378 NA non-coding downstream 187700 29399840 ~ 29407716 (-)
G494496 NA non-coding upstream 14014 29610823 ~ 29611022 (-)
G494497 psmd9 non-coding upstream 19764 29616573 ~ 29623212 (-)
G494503 NA non-coding upstream 28231 29625040 ~ 29625323 (-)
G494504 NA non-coding upstream 28651 29625460 ~ 29625716 (-)
G494505 NA non-coding upstream 29683 29626492 ~ 29626703 (-)
G494389 LOC106585296 other downstream 180102 29411215 ~ 29415314 (-)
LOC110525655 LOC106585601 other downstream 1760114 27827231 ~ 27885634 (-)
LOC110525653 NA other downstream 1858438 27734995 ~ 27737024 (-)
G494542 NA other upstream 78514 29675323 ~ 29675573 (-)
LOC110525714 LOC106585251 other upstream 929877 30526034 ~ 30527686 (-)
G495554 NA other upstream 948593 30545402 ~ 30549450 (-)
G495560 NA other upstream 978309 30575118 ~ 30575573 (-)
G496772 NA other upstream 2064584 31661393 ~ 31661618 (-)

Expression


Co-expression Network