LOC118964857


Basic Information

Item Value
gene id LOC118964857
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29970067 ~ 29974882 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052057.1
tttttttcccAAAGTGGTacgcatgttgtgtaaatcaaatgatacaaaccacccccccccaaaaaaattattccaggttgtaaggcaacgaaaataggaaaaatgccaaggggtaaatactttcgcaagccactattattttttttaatgtacttTCTATGAGACCTTTTGGTTTTAGGTGAATTTGAACTACCTGTTTATTTATTTCTCTGCGTTCATTTGTTAAAAGCATTAAAGTGCAAGAGAGACCGGCAAGAAATAGACTAATGTCTATCTCCACAATATCCTTTAGATCACACAAGCACTGTGAGTTAAGAGGATTAAGGGCTAGAGTTATGAAATGTCAGGAAAAAACGAGTgttaaacacaccacaccataagCTTTACATTTACAGTGCTTCAAAAATACCTTTTGTAAATAtaatttttaaataaaatgttattgcaAATGGATGGACTTCATTACTGTAttgccatgttgttgttttttttttttgggggggggggggtgaacaggTGCTCTGCAACAGACACACATCAGTCTTACTATATGATATGTCATCTCTATTGTAAAGATTTACAGGTAGGCCGTTATATTTCCATTGTATAGGAATGATTCAAAATATCACATCATCCAATAATTTTAACCCTCTATTTCAACCCTTAGAGGAGGTGATAGTTTTGAGTATGATATACATCTTGATTTTATATCAGTCctattaataaaaaaaaagaacaatATTCTGACAATAACTGGCCAAAATACTCTGTCCATATTATAGGCGGCTCATAAAATTATATGATCAGTGTGCAGGAGGATCGTAACCGGAAGCAGACATCCTTCAAAAGCATTGTGGAATAAAAACAGTTGCACAATACAATTTGTTTTGGAGTGGACATGTTTTGTATTTCTCCATTTATTTATAGAAACATCGGCAATTTTTTAGAGACATACGACTAATTGATTGACCTAACGTTAGCATACACCGCGTACATTTTTGACTATGGGGCGCAGTAGATCGCGCGACAGAAAAAATAACATCAAAAAAGAAAAAGCGAAGACGTTCCTCTTCATCCCTGTCCAGCAGCAGTGCAAATCCGATCCCTTTAAATAAAGTCACATTCCGTTAAGGTTTTCGTCACTCGATTATAGGCATGTAACGTTAAACAGTCACACTGGAATGTGTATAGCTGCTATTAGCAACGCTGATACACTACAGTTGCTCCTTTTGGTATTAGGTTGTTCAAAAACAGTCCGTGGGAAGCCAGAAGTTGAatacaattccatttcaatttacTAGGACGGTTGGTAATTAAAACGGGGGGAATTTTAGTCAAACTATCTAAAGGAACGTATTATTAAACGGACTTTCCAAACATCGGTATGTTGTCGACCCACTTCCTCTCTGCTTACCTgatgtcaaaataaaagtcccccacAAGTTATACCATCTATGGCGCACGTACAGGACTTTATTTTGAATGAGGTATGAAGCGAGGAAGTCGGTCTACAAAACGCTAATTTCTAACCGACGTAGAATTCAATGCAATTCAACTTCGTGTTCAACAATGTGTAGTGCTTCAGACAATGCACATCCTCACACAGACATATCTATTATCTAATTTATCAGAGAATATGGTAATGAAATGCATTTTATTATCAATGCCGACAATGTACCTTTGTTATACCTTTGTCTGCTTCAGAtgggaaagaaggaaagaaaaaaataaagttCCTCATCTTCCTTGTCAAGctcttcttcatcctcatcaAGTGATGAAAAGACCAAGAGGAAGGAAAAAATGAAAAAATTCAAGAactagtctgggtagccatttgactagatgttcaggagtcttatggcttgggggtagaagctgttaagaagcctcaaTGCTGTCATAGTGCTAGCCtccgtctgtggtggtatgtaaacagctatagaccacactacctcaggcgagcaatagcatTTTGTCTTATGTTGTCAATGATGGGATGTTTCTTTGTTACCTAGCTCAACAAGGAATGAAAAATGAAACAAGACATAAAGCTGAGCAGATATATCTTTTGTTTTGTCCATTCTTTAGCAATGACAGATGAGCAGAAAGCCAGGCTATCCACCAAGAGGCCCCTAACGAAGGAGGAGTATGAGGCTAAGCAGAGTGTCATCTGCAGGGTGGTAGATCCTGAGACTGGACGCACCAGGCTGataagaggagaaggagagatcaTTGAGGAGATTGTCAGTAAAGAAAGACACAAAGAGATCAACAAGGTAAATGGAAAACCATCAAAGGCCACGTAGCGGTGTGTGCTTTTGGGGGTTAAAATAAAATCTTGTCCTCTACCCCCCAAAAATGCCTACCTAACATTTACCCTAAAATCTTGTCACAGCAAGCCACAAAGTGAGACGGAAACCTCTTTCAGGAGAAACTAGGATTGAACAGGTACAGGATCACACCTGATGCCAAGGTTATGGTAGAAAGGAGGAAGGAGCAATTTATACTATTCTGTATAGATAGGACAGGAGAATCAAACTCCAGTGAATGTTTGGTTGTGACATGATCACTACATGTCTCCAAAATGAAAGTGAAAACAACCCTTTCTGTGCATATCTATGTCTATCTAGGTCACACTTTAAATTAAGTTTGGCCAGACTTGATGTTTAATTGTTCAAATTAAATGTAATAACATTCAGATTTTACTTGACCAGCATCCTTTCACCACAATTCACTTTGGACTTTCTCTGAATGCATCAGAACGGCCATGACGGCCTGACTGTCAATGTTTTATTATTCAATTCCATTATACATGCATTCAAACTGAACCCAAAAACCCAAGTCAACTGTGTAATGCTGCttactttagttttttttttaccatgtacactgaacaaaaatataaatgcaacatgtaaagtactGGTTCTGTGTTTCATGCACTGAAATACAAGATCCCCAAAattgtccatatgcacaaaaagcttatttcgctcaaattttgtgcaaaaatttgattacatccctgtttgtgagcattttatcctttgtcaagataatccatccacctga

Function

NR:

description
ADP-ribosylation factor-like protein 6-interacting protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052057.1 True 3075 mRNA 0.38 3 29970067 29974882

Neighbor

gene id symbol gene type direction distance location
kmt5ab kmt5a coding downstream 99660 29863198 ~ 29870407 (-)
LOC118965073 NA coding downstream 158284 29798141 ~ 29811783 (-)
LOC110525697 rsrc2 coding downstream 183139 29769924 ~ 29786928 (-)
LOC110525696 LOC106585281 coding downstream 209695 29754902 ~ 29760372 (-)
LOC110525694 LOC106585282 coding downstream 215664 29706059 ~ 29754403 (-)
LOC110525703 LOC106585270 coding upstream 1276 29976158 ~ 29980778 (-)
LOC110525706 NA coding upstream 130483 30102891 ~ 30141156 (-)
LOC110525709 LOC106585264 coding upstream 214690 30189572 ~ 30191815 (-)
sftpbb LOC106585263 coding upstream 224712 30199594 ~ 30209590 (-)
LOC118965020 NA coding upstream 336178 30311060 ~ 30324946 (-)
G494672 LOC106585272 non-coding downstream 1767 29962791 ~ 29968300 (-)
G494703 NA non-coding downstream 8706 29960983 ~ 29961361 (-)
G494702 NA non-coding downstream 9341 29960144 ~ 29960726 (-)
G494701 NA non-coding downstream 10246 29959613 ~ 29959821 (-)
G494700 LOC106585272 non-coding downstream 10791 29958981 ~ 29959276 (-)
G494712 NA non-coding upstream 17005 29991887 ~ 29992155 (-)
G494787 NA non-coding upstream 189142 30164024 ~ 30164528 (-)
G494785 NA non-coding upstream 198948 30173830 ~ 30179693 (-)
G494821 NA non-coding upstream 210422 30185304 ~ 30185520 (-)
G494542 NA other downstream 294494 29675323 ~ 29675573 (-)
LOC110525684 LOC106585295 other downstream 466676 29502192 ~ 29520980 (-)
LOC110525681 hectd4 other downstream 486721 29411204 ~ 29483533 (-)
G494389 LOC106585296 other downstream 554753 29411215 ~ 29415314 (-)
LOC110525655 LOC106585601 other downstream 2134765 27827231 ~ 27885634 (-)
LOC110525714 LOC106585251 other upstream 551804 30526034 ~ 30527686 (-)
G495554 NA other upstream 570520 30545402 ~ 30549450 (-)
G495560 NA other upstream 600236 30575118 ~ 30575573 (-)
G496772 NA other upstream 1686511 31661393 ~ 31661618 (-)
G496777 NA other upstream 1696096 31670978 ~ 31671927 (-)

Expression


Co-expression Network