LOC110525703 (LOC106585270)


Basic Information

Item Value
gene id LOC110525703
gene name LOC106585270
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29976158 ~ 29980778 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606074.2
ACGTATTGAGAATATGCTCAGTGCCAGCAGCCAGCGCTGGAGGGGGACATGAGCCTTTAAAACATCTCGAGCCCTCTCAAACTTCCTTACAGGCGGTGCTCTTTCAGACCGGGTTTACTTCCTCCAGGCTCCCTCGCTTCTCTCTTCCTTAACTCATTGTTGGATTACTTTTCTAGATCAGTAAACATGGCAACGCTGAGAGCTCTGAGAAAATTCTGCCAGCAATCTAAGCATCAAGTGTGCAGTCTACATATGTCCGCATCAAGACAGGAAGCTGTGGTCATCTCAGGCAGGAAGTTGGCCCGTCAGATCCGGGAGGAGGCCAGAACCGATGTGGAACAGTGGGTCTCCACTGGCAACAGGAGACCCCACCTGAGCGTGGTCCTTGTAGGAGATAATGTAGCCAGTCACTCCTACGTCCTGAATAAGACCCGGGCTGCAGCTGATGTTggtatcagcaGTGAGACCATCCTGAAGCCCTCCTGTATCTCTGAGGATGAACTCATGGACCTGATCTACAAACTCAACACAGACCACCGGGTGGATGGCCTGCTGGTGCAGCTGCCTCTGCCAGAACACATTGACGAGCGGCGCATCTGTAATGCTGTGTCCCCCGACAAGGATGTGGACGGCTTCCATGTGGTCAATGTGGGCCGCATGTGCCTGGACCAGTCCACCATGCTGCCCGCCACTCCCTGGGGAGTCTGGGAAATCATCAAACGCACAGGAATTCCTACCCTTGGAAAGAATGTTGTGGTAGCGGGACGCTCCAAGAATGTGGGCATGCCCATTGCCATGTTGCTGCACTCGGATGGACGCCATGAGAGGCCAGGGGGTGATGCCACGGTCACTATCTCTCACCGTTACACACCAAAGGAACAGCTCCGTCAGCACACAAGAATTGCAGACattgttgttgctgctgcagGGATTCCAAACCTCATCACTGCAGACATGATCAAAGAAGGAGCAGTCGTTATTGATGTTGGAATAAACAGAGTGCATGACCATGTGACTGGCAAGGACAGACTTGTAGGGGATGTGGATTTTGAAGGTGTGAGACAAAAGGCTAGCTTCATTACCCCAGTGCCTGGAGGAGTAGGACCCATGACAGTGGCCATGCTTATGAAGAACACAATCAAGGCAGCTAAGAACCTCCTGCTGACTCCCGCTGAGAGGATCCGCATGGTAGCCTCTTCATAACAGGCCATACCTGACTTCATCAAGTGACACATTCCATCCCACCATCCCTTCCCTTTTTACTCTGAGTAACTCGGCGAACTCCACTGCACACCGACACAGATCGAAAAATGATTGCTTTAGGATTCTCAACTTGCTCTGGTACCTTCCACTTTCATAATCTCCACCCGCCATTTCAGACTAATACAACAACTCAGCCATTCAGCTACTATATacgccttgcaaaagtattcatcccccttgggttttttcctattttgttgcattacaacctgtaatttaaatagatttttatttggatttcatgtaatggacatacacaaaatagtccaaatatggtaaa

Function

NR:

description
bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial-like

GO: NA

KEGG:

id description
K13403 MTHFD2; methylenetetrahydrofolate dehydrogenase(NAD+) / 5,10-methenyltetrahydrofolate cyclohydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606074.2 True 1543 mRNA 0.50 8 29976158 29980778

Neighbor

gene id symbol gene type direction distance location
LOC118964857 NA coding downstream 1276 29970067 ~ 29974882 (-)
kmt5ab kmt5a coding downstream 105751 29863198 ~ 29870407 (-)
LOC118965073 NA coding downstream 164375 29798141 ~ 29811783 (-)
LOC110525697 rsrc2 coding downstream 189230 29769924 ~ 29786928 (-)
LOC110525696 LOC106585281 coding downstream 215786 29754902 ~ 29760372 (-)
LOC110525706 NA coding upstream 124587 30102891 ~ 30141156 (-)
LOC110525709 LOC106585264 coding upstream 208794 30189572 ~ 30191815 (-)
sftpbb LOC106585263 coding upstream 218816 30199594 ~ 30209590 (-)
LOC118965020 NA coding upstream 330282 30311060 ~ 30324946 (-)
LOC110525714 LOC106585251 coding upstream 545256 30526034 ~ 30527686 (-)
G494672 LOC106585272 non-coding downstream 7858 29962791 ~ 29968300 (-)
G494703 NA non-coding downstream 14797 29960983 ~ 29961361 (-)
G494702 NA non-coding downstream 15432 29960144 ~ 29960726 (-)
G494701 NA non-coding downstream 16337 29959613 ~ 29959821 (-)
G494700 LOC106585272 non-coding downstream 16882 29958981 ~ 29959276 (-)
G494712 NA non-coding upstream 11109 29991887 ~ 29992155 (-)
G494787 NA non-coding upstream 183246 30164024 ~ 30164528 (-)
G494785 NA non-coding upstream 193052 30173830 ~ 30179693 (-)
G494821 NA non-coding upstream 204526 30185304 ~ 30185520 (-)
G494542 NA other downstream 300585 29675323 ~ 29675573 (-)
LOC110525684 LOC106585295 other downstream 472767 29502192 ~ 29520980 (-)
LOC110525681 hectd4 other downstream 492812 29411204 ~ 29483533 (-)
G494389 LOC106585296 other downstream 560844 29411215 ~ 29415314 (-)
LOC110525655 LOC106585601 other downstream 2140856 27827231 ~ 27885634 (-)
G495554 NA other upstream 564624 30545402 ~ 30549450 (-)
G495560 NA other upstream 594340 30575118 ~ 30575573 (-)
G496772 NA other upstream 1680615 31661393 ~ 31661618 (-)
G496777 NA other upstream 1690200 31670978 ~ 31671927 (-)

Expression


Co-expression Network