LOC110525706


Basic Information

Item Value
gene id LOC110525706
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 30102891 ~ 30141156 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981739.1
atgccatacacgctgtctgacATCTGCtctCACATCCCTAGGGCCAAACCTGAGCTTGTCCTCCTTAACCACTACTATGAAGATCTGGACTGCATCGCCCTGTCTGACATGGCCTGCTCTGAGATCAGCGAGCTGCTGGAGAAGTTGGGCTTCTACAAGAAGGCTCAACCTGAGGATGTGATCCCAGTGGAGTTCTGCTTCTCCCCCGCCAAGGACAGCCCCTTCAAAGGCACCCCCAAATCCCAGTCCtccccctcctcagcccccccCAGACAACGCTTCCTCAGAGTCCACGGAGAGGCGGAGAGGCCAAACACTATGACCTATAACCCTCACAGCAGTAAAGAGGAGTGTGGACCTGGATAGACAGGGCTACTCACCCCCAGTTCTGGTCCAAGACCAGTTTGTTTCTGCATCTCATAACAGAAATGTTTTGGATCATAATTACAAGCAGGTCCTGGATTAGCACTTGAGGGAACAGTCTCTGTAGCATCAGAAAAGGTTTTGAAGGTCACACTAAAATTGCATGTACATTTTTCCTGCTGTTTGTCCATTTATTTCTGGTGATGCGTATGATTTACCACAAAGTGTCAAGTATGTGGTCTCTCTGCTGATCTCGTGTGTAAAATGACTTCCTGTACACTGTGGAACTGAATGATGCCTGGTGTGTGGAGCTTAGGCACAAGGGGATTCAAGTGAAGGGGATGACAAATAGTTGTAAAAGAAAAATGTGTCACTCAATATTTTTGAAAATGTGTATACCATCCATTTGCCATTTCTAGACTATCCATTCTAAAAACAAATTCCCATTGCAAacacaattgtttttttttacagtaacaGACAAATTAAAGACAAACAATCAACAACAAATATTTAGAACTTAAATTGGTTTTAATTGTTAATTTACATTTAATTGTAGAGtacaaatttatttataaagccctttttacatcagcagatgtaaaAAGATGTCACAAAGATCTTATACAGAATccctgcctaaaaccccaaacagcaagcaatgcagatgtagaagcacagtggctaggaaaaactcccttgaaaAGCAGGAACctcggaagaaacctagagaggaaccaggctctgagggggggCCAGTACTCTTCTACAAAAACAAGGAATTATAATGTGTCCaagcatgtacagtg
>TU562107
TTAGAACTTAAATTGGTTTTAATTGTTAATTTACATTTAATTGTAGAGtacaaatttatttataaagccctttttacatcagcagatgtaaaAAGATGTCACAAAGATCTTATACAGAATccctgcctaaaaccccaaacagcaagcaatgcagatgtagaagcacagtggctaggaaaaactcccttgaaaAGCAGGAACctcggaagaaacctagagaggaaccaggctctgagggggggCCAGTACTCTTCTACAAAAACAAGGAATTATAATGTGTCCaagcatgtacagtgcattcacattttgttacgttacacccttattctaaaatgtatgagatctacacacaatacctcacaatgacaaaggaaaaacaggtttttagacatttttgcaaatgtattcagacactttactcagtactttgttgaagcacctttggcagcgattacagccttgagtcttcttgggtatgacgctacaagcattgaacacctgtatttggggagattctcccaatcttctctgcagatctgctcaagctctgtcaggttggatggggagaatagctgcacagctattttcaggtctctccagagatgtttgactgGGTTCAAGtatgggctctggctgggccactcaaggacattcagagacttgtccagaagccactcctgtgttgttttggctgtgtgcttagggttgttgtcctgttggaaggtgaaccttcgccctagtctgaggtcctgagtgctctggagcatgttttcatcaaggatatctttgtactttgctctgttcatctttccctcgagcctgacatttcaaggatgatcaatggaaacaggatgcacctgagctcaatttcgagtctcatagcaaaggatctgaatactcaTGTTTCTTCTTTTTAtacatgtgcaaacatttctaccaACCTgctattgctttgtcattatggggtattgtgtgtagattgctgagaatttgtatttatttaatcaattttagaataaggctgcaacataacaaaatgtgtgaaaagtcaaggggtctgaatactttctgaatgcactgtatgtacagtacaggaTTCACTAGTTTGAGAAAGCTCTCTCTGATTGCCAAATTGGCAGGAGCGGAATATTGAAAAAGTGTAACTTTCTCAAGTCTCTATTACAGATGTACAGAGAACAAAGCAGTTCATTACATCAAAACCAGTTCTAAATCTAACTGAAAAGTATTACAATTCTTGATATATAAATCATAATATAtaatggaatatatatatattttttcttcactTAAGTTCAGAAAATATACATTGGAAATAAAGTACATTTAGCCTTTATCAGTAATACTCTCCTGTTCATCGGTCATAGAATCGACTGAGCTGAAAGCCAGCCTTCATTGGGCCAAAGGATGTAGAGAAGAGAAGTTGGCCTCGCCAACAAACCTTTCATATTCAATCAAATAATCACATTACCATAAACTTTGTTCTGGCTATAGGTTTGATTCATAGAAATGAAACACTCATGAAACAAAACTTCAAAGCATATGGTGCTGGCAGTGTGAATGTGACACCATTGTGAATCTGGCAAAAATAACTAAGCACTTCCAGGTCACGGATTTTGAGTCCTGTCCTGTATACTTTGTATATTAATAACTAGGGAGAAAATTATGGAAAATGTGCACAATTATCAATATATTTTATACATTATCAAACAAATAATTATTTAAAGTATTTCTATGATATATGTCTCTTTTTTCATGCGTAAATGgtcaacaatgtttttttctgttcTATCATTTTTTGGACTGTACAAAATGTTCTGTACATTGTGTCGCAGTAAAAGGGTTGTCCATTCTACTCAACAGCACTTCTAGTTTCCAAATCCACAGAGTTTACACCCCAGTCAGGGCTGCTAATTTTGTGGCCCTTAAAGCCCCATGCAgtctttttaattgtatttttaaatcaTCACTCTGTCTAATAAATCACTCTGTGTGTTTATTTaaagaaaaatattttttatcatTTATTTTCCTGCGCCTATTTTGGCTATTTGAATGCTCAGTCTGATCGTATGGGCGTTGGGAAACTATTTTCCTTTTTTTATATTGTTAAACAAAATTTTAAAAATGTTATTAGGAAAGAAAATGTCCTAATAAAATGTTACGTGTTTCGaccatttgtattatttttataCCATCTTCATTGctgggcttttattttgaagggaaATCGTTGAGGTCACAGCCTTATTCTTGCTGGCATCTCAAACATGAATGTGACATCTCAGTATTAGAAAATGGCTATTACAACCTAGTCTGGCTTTAACATCTCAGTATTAGAAAATGGCTATTACAACCTAGTCTGGCTTTAACATTTCAGTATTAGAAAATTGCTATTACAACCTAGTATGGCTTTAACGTCATCTGGGTTTGTAGATTCAGATATGGTTCTTACTCAGCATAGGGCTGTACAAACAGATCCACCAATGTCATAATGCTAACTACTATATAACACA
>TU562108
cagaccctttactcagtactttgttgatgcacctttggcagcgattacagcctcgagtcttcttgggtatgacactacaaacacctgtatttggggagattctcccaatcttctctgcagatctgctcaagctctgtcaggttggatggggagaatagctgcacagctattttcaggtctctccagagatgtttgactgGGTTCAAGtatgggctctggctgggccactcaaggacattcagagacttgtccagaagccactcctgtgttgttttggctgtgtgcttagggttgttgtcctgttggaaggtgaaccttcgccctagtctgaggtcctgagtgctctggagcatgttttcatcaaggatatctttgtactttgctctgttcatctttccctcgagcctgacatttcaaggatgatcaatggaaacaggatgcacctgagctcaatttcgagtctcatagcaaaggatctgaatactcaTGTTTCTTCTTTTTAtacatgtgcaaacatttctaccaACCTgctattgctttgtcattatggggtattgtgtgtagattgctgagaatttgtatttatttaatcaattttagaataaggctgcaacataacaaaatgtgtgaaaagtcaaggggtctgaatactttctgaatgcactgtatgtacagtacaggaTTCACTAGTTTGAGAAAGCTCTCTCTGATTGCCAAATTGGCAGGAGCGGAATATTGAAAAAGTGTAACTTTCTCAAGTCTCTATTACAGATGTACAGAGAACAAAGCAGTTCATTACATCAAAACCAGTTCTAAATCTAACTGAAAAGTATTACAATTCTTGATATATAAATCATAATATAtaatggaatatatatatattttttcttcactTAAGTTCAGAAAATATACATTGGAAATAAAGTACATTTAGCCTTTATCAGTAATACTCTCCTGTTCATCGGTCATAGAATCGACTGAGCTGAAAGCCAGCCTTCATTGGGCCAAAGGATGTAGAGAAGAGAAGTTGGCCTCGCCAACAAACCTTTCATATTCAATCAAATAATCACATTACCATAAACTTTGTTCTGGCTATAGGTTTGATTCATAGAAATGAAACACTCATGAAACAAAACTTCAAAGCATATGGTGCTGGCAGTGTGAATGTGACACCATTGTGAATCTGGCAAAAATAACTAAGCACTTCCAGGTCACGGATTTTGAGTCCTGTCCTGTATACTTTGTATATTAATAACTAGGGAGAAAATTATGGAAAATGTGCACAATTATCAATATATTTTATACATTATCAAACAAATAATTATTTAAAGTATTTCTATGATATATGTCTCTTTTTTCATGCGTAAATGgtcaacaatgtttttttctgttcTATCATTTTTTGGACTGTACAAAATGTTCTGTACATTGTGTCGCAGTAAAAGGGTTGTCCATTCTACTCAACAGCACTTCTAGTTTCCAAATCCACAGAGTTTACACCCCAGTCAGGGCTGCTAATTTTGTGGCCCTTAAAGCCCCATGCAgtctttttaattgtatttttaaatcaTCACTCTGTCTAATAAATCACTCTGTGTGTTTATTTaaagaaaaatattttttatcatTTATTTTCCTGCGCCTATTTTGGCTATTTGAATGCTCAGTCTGATCGTATGGGCGTTGGGAAACTATTTTCCTTTTTTTATATTGTTAAACAAAATTTTAAAAATGTTATTAGGAAAGAAAATGTCCTAATAAAATGTTACGTGTTTCGaccatttgtattatttttataCCATCTTCATTGctgggcttttattttgaagggaaATCGTTGAGGTCACAGCCTTATTCTTGCTGGCATCTCAAACATGAATGTGACATCTCAGTATTAGAAAATGGCTATTACAACCTAGTCTGGCTTTAACATCTCAGTATTAGAAAATGGCTATTACAACCTAGTCTGGCTTTAACATTTCAGTATTAGAAAATTGCTATTACAACCTAGTATGGCTTTAACGTCATCTGGGTTTGTAGATTCAGATATGGTTCTTACTCAGCATAGGGCTGTACAAACAGATCCACCAATGTCATAATGCTAACTACTATATAACACA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981739.1 False 1172 mRNA 0.44 3 30105365 30107695
TU562107 False 2534 lncRNA 0.36 2 30102891 30105660
TU562108 True 2120 lncRNA 0.36 3 30102891 30141156

Neighbor

gene id symbol gene type direction distance location
LOC110525703 LOC106585270 coding downstream 124587 29976158 ~ 29980778 (-)
LOC118964857 NA coding downstream 130483 29970067 ~ 29974882 (-)
kmt5ab kmt5a coding downstream 234958 29863198 ~ 29870407 (-)
LOC118965073 NA coding downstream 293582 29798141 ~ 29811783 (-)
LOC110525697 rsrc2 coding downstream 318437 29769924 ~ 29786928 (-)
LOC110525709 LOC106585264 coding upstream 81877 30189572 ~ 30191815 (-)
sftpbb LOC106585263 coding upstream 91899 30199594 ~ 30209590 (-)
LOC118965020 NA coding upstream 203365 30311060 ~ 30324946 (-)
LOC110525714 LOC106585251 coding upstream 418339 30526034 ~ 30527686 (-)
LOC110525715 tco2 coding upstream 429571 30537266 ~ 30553741 (-)
G494712 NA non-coding downstream 113210 29991887 ~ 29992155 (-)
G494671 NA non-coding downstream 124655 29974486 ~ 29980710 (-)
G494672 LOC106585272 non-coding downstream 137065 29962791 ~ 29968300 (-)
G494703 NA non-coding downstream 144004 29960983 ~ 29961361 (-)
G494702 NA non-coding downstream 144639 29960144 ~ 29960726 (-)
G494787 NA non-coding upstream 56329 30164024 ~ 30164528 (-)
G494785 NA non-coding upstream 66135 30173830 ~ 30179693 (-)
G494821 NA non-coding upstream 77609 30185304 ~ 30185520 (-)
G494826 NA non-coding upstream 84580 30192275 ~ 30196117 (-)
G494833 NA non-coding upstream 110239 30217934 ~ 30218515 (-)
G494542 NA other downstream 429792 29675323 ~ 29675573 (-)
LOC110525684 LOC106585295 other downstream 601974 29502192 ~ 29520980 (-)
LOC110525681 hectd4 other downstream 622019 29411204 ~ 29483533 (-)
G494389 LOC106585296 other downstream 690051 29411215 ~ 29415314 (-)
LOC110525655 LOC106585601 other downstream 2270063 27827231 ~ 27885634 (-)
G495554 NA other upstream 437707 30545402 ~ 30549450 (-)
G495560 NA other upstream 467423 30575118 ~ 30575573 (-)
G496772 NA other upstream 1553698 31661393 ~ 31661618 (-)
G496777 NA other upstream 1563283 31670978 ~ 31671927 (-)

Expression


Co-expression Network