LOC110525714 (LOC106585251)


Basic Information

Item Value
gene id LOC110525714
gene name LOC106585251
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 30526034 ~ 30527686 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606091.2
ATTGCGCACTGACTGCATACAACTGGTTTGCTGACTTTTGTTAGTTTTTTCCAGGATGCCATCAAGTGGGTGAGAAATGGACAATCACTTTCGACATGTCCTCCATCTCTGCGAGTGACGACGTCCAGCTGTCAGAGCTTCGGATCAGACTACCAGCGTTCTCCGCTTCCAAACACGTCACATTGGACATTTATCACTCACGAAAGCAGGACTGCGAGTCTGACACTGAACTGTGCAGCGAGGAGCGCCTTCTCTTGGGCAGCTTTGGCGCATCGCCCAGTGACACCAGGTCTCAATGGAACGTGTTCAATGTGACAGCTCTGCTCAAATATTGGATGCATCAGGGAGACACAGTGACGCAAAGCCAAGAAGCAAGAGTCCTTGTGATAGAGAAAGAACACGAGAGTGGGGCACCGGACGACGGAGAGGAAATTGACATGGCCTACATCGGGCATCTTACGCACAAGAAAATCAAGGTTCACCATCCGACAGACGAACGGGTTATGATGGTTGTCTTCTCCAAGCACAACCTGCCCCGAGATGGCGAGAGCGCACCCACTCTCATCCGTACTGTGGAACACTCCAAATACGCAATTTTGGACCAAGTCAGCCGCGAAGTTCAAGGGCGACGCCACAAGAGAAACCGAATGGAGAGAGTGCGGATGGCCGGCGGAATTGCAGCTAATGCTACTGGGTCCGCGGCTGAAGCCGTCCAACGCCCACTCTGTCGGAAGATTGACATGTGGGTAGATTTCGACCACATCGGCTGGAACGAGTGGATTGTGTATCCAAAACGCTACAACGCCTTCCGCTGCGAGGGCGAGTGCCCTACTCCGGTGGATGAATCCTTCAGTCCCACCAACCACGCATACATGCAAagCCTGTTGAGTCTGTACCATCCGGATCGCGTGGGTTGTCCGTCCTGCGTGCCCACGCGCCTCAGCCCGCTGTCCATGCTGTACTACGGGGACGAAGACGTGGTGTTGCGGCATCACGAGGACATGATCGTGGAGGAGTGTGGCTGTCACTGATACCCCAGCCACATCGGGCCCGCAACCACAAAGACTATTGTGAAAACACTTATTTAAAAGGCTTCACTTGGAATATATTGTGACCAATGGAATGACTCTTGAAGGTTTGGTGTCCAACCTTAAGTTGTTTGTGGTCGTTATCACAAGGAAGATACATTTCTTTGCTATGGTCCTTACTATATCTTATTCTATCATGGCCTATGTCATGATCTCTGCTGGAACCACAGCATTCCATATTAGAAGATTTGTCCTTGGTTTGAACCAGCATGATAAAGATGTACTGTGATTTATTTGAATATTTATTACCCATTTCGGGTGTTGCTTTTAGGCTATACGTTTTATGTTGTGTTTGTCAGTGTTTTGTCATTTTCAAGAAGTGAAAGAAATATGCTGCCAAAATAGTGCCTTAATTGTTatgattattttgtattttcactCATTTATTAATCCTTTAATACAAGATATATTTTTGTACatacaatgaaaaaaataacaatattaaaGCATTTT
>TU562998
CGGATCAGACTACCAGCGTTCTCCGCTTCCAAACACGTCACATTGGACATTTATCACTCACGAAAGCAGGACTGCGAGTCTGACACTGAACTGTGCAGCGAGGAGCGCCTTCTCTTGGGCAGCTTTGGCGCATCGCCCAGTGACACCAGGTCTCAATGGAACGTGTTCAATGTGACAGCTCTGCTCAAATATTGGATGCATCAGGGAGACACAGTGACGCAAAGCCAAGAAGCAAGAGTCCTTGTGATAGAGAAAGAACACGAGAGTGGGGCACCGGACGACGGAGAGGAAATTGACATGGCCTACATCGGGCATCTTACGCACAAGAAAATCAAGGTTCACCATCCGACAGACGAACGGGTTATGATGGTTGTCTTCTCCAAGCACAACCTGCCCCGAGATGGCGAGAGCGCACCCACTCTCATCCGTACTGTGGAACACTCCAAATACGCAATTTTGGACCAAGTCAGCCGCGAAGTTCAAGGGCGACGCCACAAGAGAAACCGAATGGAGAGAGTGCGGATGGCCGGCGGAATTGCAGCTAATGCTACTGGGTCCGCGGCTGAAGCCGTCCAACGCCCACTCTGTCGGAAGATTGACATGTGGGTAGATTTCGACCACATCGGCTGGAACGAGTGGATTGTGTATCCAAAACGCTACAACGCCTTCCGCTGCGAGGGCGAGTGCCCTACTCCGGTGGATGAATCCTTCAGTCCCACCAACCACGCATACATGCAAagCCTGTTGAG

Function

NR:

description
nodal homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606091.2 False 1541 mRNA 0.47 2 30526034 30527686
TU562998 True 749 TUCP 0.54 2 30526686 30527546

Neighbor

gene id symbol gene type direction distance location
LOC118965020 NA coding downstream 201088 30311060 ~ 30324946 (-)
sftpbb LOC106585263 coding downstream 316444 30199594 ~ 30209590 (-)
LOC110525709 LOC106585264 coding downstream 334219 30189572 ~ 30191815 (-)
LOC110525706 NA coding downstream 418339 30102891 ~ 30141156 (-)
LOC110525703 LOC106585270 coding downstream 545256 29976158 ~ 29980778 (-)
LOC110525715 tco2 coding upstream 9580 30537266 ~ 30553741 (-)
si:ch211-102c2.8 LOC106585256 coding upstream 33735 30561421 ~ 30579113 (-)
LOC110525719 LOC106580333 coding upstream 51792 30579478 ~ 30656421 (-)
LOC110525721 LOC106584972 coding upstream 135263 30662949 ~ 30686072 (-)
LOC110525722 LOC106584973 coding upstream 167099 30694785 ~ 30748758 (-)
G495505 LOC106585258 non-coding downstream 2653 30522006 ~ 30523381 (-)
G495502 NA non-coding downstream 7620 30501931 ~ 30518414 (-)
G495520 LOC106585259 non-coding downstream 54714 30471105 ~ 30471320 (-)
G495518 NA non-coding downstream 56854 30468974 ~ 30469180 (-)
G495516 NA non-coding downstream 57395 30468417 ~ 30468639 (-)
G495540 NA non-coding upstream 588 30528274 ~ 30528571 (-)
G495543 NA non-coding upstream 3461 30531147 ~ 30531348 (-)
G495546 NA non-coding upstream 6666 30534352 ~ 30534597 (-)
G495578 NA non-coding upstream 89327 30617013 ~ 30617233 (-)
G494542 NA other downstream 850461 29675323 ~ 29675573 (-)
LOC110525684 LOC106585295 other downstream 1022643 29502192 ~ 29520980 (-)
LOC110525681 hectd4 other downstream 1042688 29411204 ~ 29483533 (-)
G494389 LOC106585296 other downstream 1110720 29411215 ~ 29415314 (-)
LOC110525655 LOC106585601 other downstream 2690732 27827231 ~ 27885634 (-)
G495554 NA other upstream 17716 30545402 ~ 30549450 (-)
G495560 NA other upstream 47432 30575118 ~ 30575573 (-)
G496772 NA other upstream 1133707 31661393 ~ 31661618 (-)
G496777 NA other upstream 1143292 31670978 ~ 31671927 (-)
G496851 NA other upstream 1315777 31843463 ~ 31892649 (-)

Expression


Co-expression Network