LOC110525990 (LOC106585213)


Basic Information

Item Value
gene id LOC110525990
gene name LOC106585213
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42302921 ~ 42360392 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606544.2
CAGTGAATTGGCCCCATATGTCGAAGGACTACCTCTGTCGAAACCACACTTTCGACATGCCTAAAGAAATGTCTGACTGGCATAGTTCAACGAGTAGTGACTCACATTTAGGGTGTCTCCCTCCTGCTCAAGGCGAGCTCAACTTTTATTCTCTTTCCCTCCGCTTGCATTCTTCCAATCATTCACCACGCTGTGTGCACGCGAGTTCAACATAGTTCCTGTTAATTTGTTTAGTATATTTGTACGTTCTATTTGCCTTTGAAACGAACGGCATTGTTGTCACTGGATTAAGTTTTATTTGTTGTTATGGGGGACTTGATTTCGAGCCACCTGGATGAGGGCAAGCGGGAGATCATTAAAGCCCGGACAGGCGAGGTGATTGGAGAGTTTGGCCGTCTGTATGAGCAGCAGTATGCAGTGGCCCTCTTCAACAAGGTCCGCTTTGACattgagggaggaggggggccCCAGCCACAGCTACTGCGCCGTAAGGCCCCGCTGGAGAATAGGTCCATCTTCTCTGGAGCTCTGTTCCAGTTTCTGGAGGAGAACAAGAAATGGAGAAACCGTTTCCTCTTCGTTCCTGACTCCTACAACATTAACTACTATGACAACAAAGCGTCTCATGAGAGAGGGCTGCACCCCAAGGGAACCATCAACTGTGCCGGATACAAAGTGCTGACCTCGATGGATCAGTACCTGGAGCTACTCAACAATAGCCTGCCTGATGTAAAGGCTAAAGTGGGCAACACTCCCTTCCTGAAGTGTGCCACCGAGTTCCTTCTGATCCTGTGGCACCCGTATGCCCGCCACTACTACTTCTGTGTGGTAACGGAGAAAGAGCAGAAGAAGTGGCATGCAGTTTTTCAGGACTGCGTGAGACATACCAATGATGGTTTGTTGGAGGAGAGTAAGGTGCAGACGCCAGCCTTCACAGACTCAGTGAGGCTTTTTCGCCAGGCCCATGGGCAGTATGGCACCTGGGAGATGATGTGTGGCGCACCTCCACAGATTCTGGCCAACCTGGTGATGGAGACACTTCTCCCTGAGGTCAGGGATCTCATCACCCCGGGACTGAaaggcaaaatgcacgaaaggcAGAGGAACTGGATGCTGATCTGCGATGCTGTTTATGGTCTGGTGGTGAGGCAGGCCCAGGCCCAGTATGAGGCTGTGGTGCAGAGCTGTGAGGCTGGACGCCCCCTTCTAGAGGCCTCCATACGCACAGACATGGATCAGATCATCACCTCCAAGGAGCACGTCAGCAACAAAATCAAAGCGGTGGCGCTGCCTAAGGCAGAGAAGCTGCTGAAGGTGAGTATCCAGCCCTACATCAGCTCTATCCTGGAGGCCCTGATGGAGCCCACCAGTCGAGGCTTCTCTGAGGTCAGGGACGTCTTCTTCAGAGAGCTGGTGGACATGAGCAAGAACACAGTGAACGACAGCACCAAGGAAAAACTGGGAGAGCACATGGAGAAGATCTCTATGCTGGCTTTCCACCCGGTGAAGATGCAGAGCTGCTATGAGAAAGTAGAGGACCTGAGTCTGGACGGCCTGCAGCAGAGGTTCGACGTCTCCAGCCCCTCCGTGTTCGTCCAGAGGGCACAGATCCTCATGAGAGAGCAAATGGACGATGCGGTGTACACCTTTGAGCAGATCctccaccagagtctggaggacCAGGGGCCAGAGGGTCTCTGTAAGAACATCCAGCGCTGCCAGGACCGGGTCATCAAGAAATTTGACTATGACAGCAGCACAGTCCGGAAGAGGTTCTTCCGAGAGGCTCTTCTTCAGATCTTCATCCCTTACATGCTGAAGCAGCTCACTCCCTCTGTCGCATCTGAGCTGCCTCGTTTCCAGGAGCTGATTTTTGAGGACTTCTCTCGTTTCATCCTGGTGGAGAACATCTTTGAGGAAGTGGTGCTGCACTCTGTCATGAAGGACATCATGATGGCTGTGAAGGAGGCAGCAGTCCAGAGGAGACACAACCTGTACAGGGACAGCATTGTATTGACCAGCAGTGACCCCAACCTGCACCTGCTGGGGGACAACCCTGCCATCGATTGGGCTGGGGAGTACGGGACAGGACAAGAGGAAGGACAGGGACAAGATGAGGTAGAGGGGGAAGAGGCTGGTGATAGTGGGGAGGCCCATAGGAGGCGCAGGATGAAGCAGGTGGTCTCTATGATCCAGCTGGATGGCTCCCCCATCCTGGTCAACGAGTCCTGCCTCGAGGTGCCCAGTGTGGATGGCATccctgaggagagggagggagagggggaggaccaggatgcTCCATCGTCTCCAGATATCGTCCACCAGGGTCCAGTCAAAGTTAATGCAACCACTCCAAAAGAAAAGAAGAAAGCCCCTCCACCTCCTGTCCAGCCAGAGAACAGTCCATCCCCTGCCCTAACGAACGGCTCCGTCCTGAAAGGAGGAGAGTCGGTGACGATCGTGAGTGTCGCCCCAGAGGTGCAGACCAAAATCTCAGAGGATGTGACCCAGGAAGCTGAGCGTGAGGAGAAGTACCTAGAGATTGAGAGCTCCTTACAGGACTCAGAGAACACGGCATCAGCCATCGAGAGTGCCATACAGGAGATAGAGAATGCTGTGCAGGAAGAGGACAGCGAGCCAGGCGTGGAGGTGGCTGCAGTTTCACAGGAGACCGCAGCAGAAGTGTCCCCCTCAAGCCAGGAGGTTAGAAGTGTACCCTCAAGCAAAGAGAAGGAATCTCTGAAAACAGTTCCGGAAGAGGCTTCGGCACCAGCAGCTCTAACCCAAGAGGATACGTCTCCTAGTTCAGACGCGGTATCTTCCCTACCCTCAACGCAGATGGAGGCAGTAGCAGTAACACCCATAGCACAAGAGGAGATCCCCATACCAACAGCCCTGGACACAGAGCTCCAAGTGCCTGCACCCACACAAACAGAAATTCCTGCAGCCACAACAACGGCCCTGGAGAAAGTCCCTGTCCCTGCACCAATGCCAGAGGAGTCGGAGAGCACTGAGAGCACTTCAAATGTCCAGAGAGCAAATCCACAACCCACGGTGGATTTGAACTCcctgccccctccacctccacaggaCGACAGTGGCTTCCAGTCTCCCACCAGTGAGGCGGTGGAGAAGGCTGCCCCCAGTACAGAGGAGCCAGAGGCAGCAGAGGTGATCCctgaggcagggggagagggagtgacTGTGGCCCAGGAGGGAGCAGCAGCGCAGAAGAAGGACTCAGAGAAGGCAGACGGCCCCAGTGTGGAATGAGTCATTGTTTGGGCTGTATGCCGGTTGTCAATTtggaatttgtttttttttaccaagacCGGGATATTATACATAATTAATCTCACAATAGCATAGACAATTTCATCAATGGAAATGGTTTGTATACAGTAGTTTTGCCAATAATTTTACCGCTTAGTTTTCGTTGTCAAGATTATTCTCTTCATAACAGTTACTTTTTTTTCACCATTATTATCCACCTCTACCAAATCATCAGTCTGTATGTACATTGATCCGGGTTCAGGTACAACTTCAATGCCTGTATATGTTGTTTTCCTATTGTTTCTATATTTTGACAGATTACGTCCACATTCCAGTTGATAGCATGTGCATTGTGGCTTGAGTGCCAGATGTTTGTGCGCTCATGCCAACTCTCACTGTCACTCattgtcataaaaaaaaaaaaacatggcttgGCAATGGCAGCTTTGGAATTAGAAAGGCCACAAACTGATCTGGAACCAGATTTAGGGACTCACTCCATTgtccttttttttttactatataTTCACTGGGTAGTGAATGAGGAGCACAATAGAAAGACCCAGTTGTGTCCATATTATGGTGTGCTGTGAATATGAAATTAACTCACACACTTCAGGTGTTCTTGGTGGGGTATATAACGTTCAATATCATCATTGATTTGTCCTCTATGATCTGCACTACTGCTCAACCACTTGAATTGGCTTTACCCTGAATCCAAAAGCTGTCAACGGTCTGACTTATCTAGTTTGTGTTCAATTGTATTTAGAGTGGACCATGACAACATGAGCAAAGCTACAGTATAGCTAGCCATGGCTAAATTCAAAATCACAGAGTATTTATTCCAATGGGTTCAACGACTGATATTATGTCCATTGTTGTCATCTTATTGTTGTTCTTTCATTGTCACTTTCGTACAGTTGCTCTCTACTCTGAAGTTTCCTGTCCGTTTTTTGAATCTCTTTTTCTATCAGAGTAATTCCAATACTTTTATAATTGTGCATCAACCTCCAATAATATTCTTCTGACGTTTATTTATTGAGATATGTTGAAAAGGTGTCTGGGAAGCAAGCAATTCTGTAGTAACAGTGCCTTATGAAATACTAGAAAACATCTCATTCAAAGTACTTTTTATTTTCTGTTTCAAATTGAAATGACAATCCGTCAAACATATTGATGTGTTAACTGTTCTGTTATCGCAAGACGTGGAAAGCAAGGCAAACGAGTAATTGTATTTGATATGTTGTCCTTAATATTtgacaaattcttattgacatgAATACCTCAGTTAAAACATTGAGCTATTCCCAACAGAGAGAGaatctgtacatactgtatttaatGCTATGTTGACTTCATACGTTTTTGACCCTTTTCACTGTCATACAGCCTTTCCACAGATGCTCGTCTTAGCAGCTGTgacaagtttttattttttactttctcTTCAGTGCCTTCATTGATACACTTAAATGATCTCCtcaattatttgtatttattatgtatTGCACTCTGCATTTACGTCCCTGTCCTGCATCCCTTTTGATGCCTGTACTTTTAGATTTATTTTACTCAATGTTATACACAGGACTGTTACTGATAATAAATAATTGTTGATTCaa

Function

NR:

description
niban-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606544.2 True 4895 mRNA 0.48 14 42302921 42360392

Neighbor

gene id symbol gene type direction distance location
npdc1b LOC106585212 coding downstream 1172 42252483 ~ 42301749 (-)
LOC110525987 LOC106585210 coding downstream 61483 42146502 ~ 42241438 (-)
dph7 dph7 coding downstream 163866 42129218 ~ 42139055 (-)
ipo11 ipo11 coding downstream 178857 41889859 ~ 42124064 (-)
si:dkey-250l23.4 LOC106584965 coding downstream 533710 41759479 ~ 41769211 (-)
LOC118964871 NA coding upstream 44447 42404839 ~ 42417077 (-)
LOC110525992 LOC106585216 coding upstream 63019 42422990 ~ 42520495 (-)
noxa1 noxa1 coding upstream 179472 42539864 ~ 42549214 (-)
LOC110525994 LOC106585220 coding upstream 216137 42576529 ~ 42587286 (-)
LOC110525997 LOC106585221 coding upstream 294592 42654984 ~ 42729594 (-)
G508888 NA non-coding downstream 159081 42142383 ~ 42143840 (-)
G508902 NA non-coding downstream 182530 42120186 ~ 42120391 (-)
G508899 NA non-coding downstream 187179 42115494 ~ 42115742 (-)
G508884 NA non-coding downstream 199407 42103030 ~ 42103514 (-)
G508882 NA non-coding downstream 200771 42101869 ~ 42102150 (-)
G509045 NA non-coding upstream 25681 42386073 ~ 42386706 (-)
G509034 LOC106585214 non-coding upstream 38584 42372441 ~ 42403220 (-)
G509058 NA non-coding upstream 57433 42417825 ~ 42418041 (-)
G509059 NA non-coding upstream 57719 42418111 ~ 42418353 (-)
G508891 NA other downstream 158036 42144097 ~ 42144885 (-)
G508303 NA other downstream 481711 41820855 ~ 41821210 (-)
G507906 selenop other downstream 840999 41421024 ~ 41461922 (-)
znf131 znf131 other downstream 863907 41431651 ~ 41459095 (-)
G507063 NA other downstream 1760592 40540659 ~ 40542329 (-)
G509432 NA other upstream 283127 42643519 ~ 42645869 (-)
G509902 NA other upstream 716300 43076692 ~ 43077157 (-)
G509949 LOC106578716 other upstream 762154 43122546 ~ 43123092 (-)
G509952 NA other upstream 764189 43124581 ~ 43125387 (-)

Expression


Co-expression Network