LOC110525998 (LOC106585223)


Basic Information

Item Value
gene id LOC110525998
gene name LOC106585223
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 42766320 ~ 42788488 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606569.2
TTAAAAGCCTCTTACGAGGGTTTGGGGCTCATTGATGGTTCCCAGGACTTTGACTCAGGACTGTCGTTGGGCTTTGGGAAACATCTACAAGAGGCTAAACAACTATTTACACCTGGAGAATAACAGGAACTAGATACCACTTTCACACTTGATTTTTCAAGCACTGTcttataggactcattttacagGCCTCGTTGAGTCCTTGGCCAATATACCGGAGGTGTTGTTTCCTGacacaCAGGAGGTCATGATTCACAAAGACAGACAAGGGGGTGTTGGTGGTTGCCATGGCATCCCGAGCTCCATGTCCCTGCACAGACAACACTCCAAACTCCCCCCTAAAGAGATGTTCAACGACATCATGTACATAGTGGGCGGCTGGACCCAGGAGGACCCCTCCTGCCCAGTGGAACAGTTCTACCCCCTGGAGAATGAGTGGAAGAACATGGCCTCCATGACCAATCACCGTGGTAACGTGGCCGTGTGCGGCCTGTATGGGAAGATCTACACAGTGGGCGGGTCTGATGGCATCACCTACAAAAGCAATGTGGACAGGTACGACCCACAAACTAACATCTGGAGTAACGACGTGACCCCACTGAGCAGCCCCCGCAGCGGAGTGTGTCTGGTGGAGATGGATGGATACCTGTACGCCCTTGGAGGGTATGACGGCATGGTCTGCACCAACACTGTTGAGAGATATAATCCCAAAATGAACAGCTGGACGAAGCAGGCTCCGATGCTGAGCCGGCGTTGTGGGGCAGCTGCTGCTGTGATGGAGGGTCAGCTGTACGTGATTGGAGGCAGCGATGGAGACGTACCCATGAACACAGTGGAGCGTTTTAATCCCTTGGACGGGATATGGTATGTGTGCCCCCCCATGTTGACCGCTAGAGAGAACGCTGGCTGCTGTGTGTACCTGGGACGTCTGTTTGTGACCGGAGGACGGGATGACCTCAACCTGGAACTCAGCGCGGCAGAGAAGTTTGATCCAGACGCTCTGAGATGGACCCCCGTCAAACACATGAGGTGCAAGAGGAACAACGTGTCCCTGATGGTGTTCAACGGGTTGTTGTTGGCTGTAGGAGGCTCTGATGGCGTTACCAATCTGAAAACAATAGAAGTATACAACCACGAGTCAAACACATGGAGACACTTTGGGAGCATGAAGACCAAGCATCCAGGAGGCCATGTTGCCATGTTGAACACAAAACATGGTTACAGCCTGTAACTGGATATGGCGTTGATGGACAATAACTTATGGATTCATCATATGTATTATgatattatttatttatgatattatttatttatttgactatGTAACATAGGACAATTACAGGGGAAGCTGTATGGAATTTCTGCAACGACAACTGTTAGACTCCTGTAAATAGTGTTGTGCTTCTTCAATAGAAATGGTTTATTGATGAGTGTATGCTGAAGGGAAAGGCAAGGATGGGAACATTGAAGGATGATTGAGAAAAGTCATTTAGAATGTGTATGGCTGTGTCCCAAACGACACcttacccagctagcacatttggttccttggaagttgtgggaatgtatgTTTTTGGTTTTACATTGGTCGTGGGAATGAAGCCATACTTTTCCTGACAGGTAAAACTGAAAGCTTTTCTAaagttctgagaacagaagtaaaaatgttgcctgttctgggaacatttatttttttgtttgcagggagagaatgttttactctggttccatgAATGTTTttctgggaggttttattaatgcTCTGAGAACAGAAATGATAGGTTATTTGGAgatttttgaataacttccttaaaactttcAATTAATGTTTCAATAAAACTTAATAAAACTGCTAGCTTATTTTGGTCAACTGCATTCAGGGAGAAAGATatctgtgtaaaaaaaataagtttTAAAGGAAGATAAGTGAGTGATGGCTGAATAGTTGGCATGGGAAAGTTCTGAGTGGTTGAGAGGCTTTGAAAGTAATAACGCTGGAATCATCAAGCAGTTCCCACTAAGCATTGACAAAATATCCAGCATTTGAAGTAATGTTGCTGTTTTCTCAAGTGTTGTACCATTCATTCAGTTCAGTCTCAGTGTCTTCTTTTTCACAGCATAGGGTGTCAGGTAAAAACACGCTTTGGTGATGAAACTTTACTTCCTTACAGtatgttataaaatacattttaccaagacaaatatgattTAATGTTCTGAATTGTCCAGTGGGGTCTTTCTCTAACATTTAATTGACAGCATATCCAACAAGTCGGAGTTTGTAACCTAATGCGTCTGATATTAACAATAGGGTCCATCTAAGATGTCATCTCTCAGAGCAGTCAACCCTCAGGGTCTCGATGCTGTCACCTACTGATATGTAATCTCTCAGTGCAGTGCATCTATCAGAAAAAGAGTGGGGGTTCGAAAGCTGTGGGTGTTTAGAAAGAAACCATATTAGGAGAAATGGGGGTTTCAAAAGGAACCATATAAGGAGAAGTGGTATTTCGAAAAGAACCATATAAGGAGAAGTGGGAATTCGAAAATAACCATATAAGGAGAAGTGGGAATTTCAAAAGGAGTCAACACTAGAAGCGCTGGAATTCCATAACTACTCGAACCGCCATGACTTGAtatttcaattattattattatttaaatattaaATGATAAATAATACATTGTAAAATTAATGCATTTTGTACAAGTTACAGTAGCTAACGTTCGCTAGCATTTGCATTTATGAAAAACTTAAGGTTACATACATGGCTAAGAGTAGGTAACAATCAAAGACACAGCTCACAGTGAGTGAATAGACATGAATAGACAATTCCTTACTGTCATCTCTGCAGACCATGACTAATGTCCAATAAACCAAACGACATCTTGAATGGCACAttttccagtggtggaaaaagta
>TU578357
ttttccagtggtggaaaaagtacccaattgtcatacttgagtaaaagtaaagataccttaatagaaaatgactcaagtaaaagcgagtcacccagtaaaatactactactTGAGtcaaagtctaaaagtatttggtttgaaatatacttaagtatcaaaagtaaatgtaatagcTAAAatatatcaaaagtaaaagtacgaTAATGTaatattccttatattaagcaaacgagatggcaca
>TU578356
GGAATTTCTGCAACGACAACTGTTAGACTCCTGTAAATAGTGTTGTGCTTCTTCAATAGAAATGGTTTATTGATGAGTGTATGCTGAAGGGAAAGGCAAGGATGGGAACATTGAAGGATGATTGAGAAAAGTCATTTAGAATGTGTATGGCTGTGTCCCAAACGACACcttacccagctagcacatttggttccttggaagttgtgggaatgtatgTTTTTGGTTTTACATTGGTCGTGGGAATGAAGCCATACTTTTCCTGACAGGTAAAACTGAAAGCTTTTCTAaagttctgagaacagaagtaaaaatgttgcctgttctgggaacatttatttttttgtttgcagggaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606569.2 False 2920 mRNA 0.43 8 42766539 42788488
TU578357 False 241 lncRNA 0.29 1 42766320 42766560
TU578356 True 355 lncRNA 0.39 1 42767750 42768104

Neighbor

gene id symbol gene type direction distance location
LOC110525997 LOC106585221 coding downstream 36945 42654984 ~ 42729594 (-)
LOC110525994 LOC106585220 coding downstream 179253 42576529 ~ 42587286 (-)
noxa1 noxa1 coding downstream 217325 42539864 ~ 42549214 (-)
LOC110525992 LOC106585216 coding downstream 246044 42422990 ~ 42520495 (-)
LOC118964871 NA coding downstream 353288 42404839 ~ 42417077 (-)
zgc:101858 LOC106585225 coding upstream 203561 42992049 ~ 42997858 (-)
LOC110526002 LOC106585226 coding upstream 217082 43005570 ~ 43018519 (-)
LOC110526003 LOC106585228 coding upstream 900816 43689304 ~ 43813410 (-)
prodhb LOC100194675 coding upstream 1152302 43940790 ~ 43955257 (-)
LOC110526006 LOC106584969 coding upstream 1256558 44045046 ~ 44099131 (-)
G509555 NA non-coding downstream 399 42765883 ~ 42766140 (-)
G509498 NA non-coding downstream 1860 42764354 ~ 42764679 (-)
G509496 NA non-coding downstream 4312 42761966 ~ 42762227 (-)
G509489 NA non-coding downstream 13036 42753197 ~ 42753503 (-)
G509487 NA non-coding downstream 16621 42749522 ~ 42749918 (-)
G509854 LOC106585224 non-coding upstream 200161 42988649 ~ 42988893 (-)
G509864 NA non-coding upstream 214113 43002601 ~ 43003044 (-)
G509865 NA non-coding upstream 214685 43003173 ~ 43003444 (-)
G509875 NA non-coding upstream 240286 43028774 ~ 43028985 (-)
G509882 NA non-coding upstream 251253 43039741 ~ 43044581 (-)
G509432 NA other downstream 120670 42643519 ~ 42645869 (-)
G509034 LOC106585214 other downstream 363319 42372441 ~ 42403220 (-)
G508891 NA other downstream 621654 42144097 ~ 42144885 (-)
G508303 NA other downstream 945329 41820855 ~ 41821210 (-)
znf131 znf131 other downstream 1327525 41431651 ~ 41459095 (-)
G509902 NA other upstream 288204 43076692 ~ 43077157 (-)
G509949 LOC106578716 other upstream 334058 43122546 ~ 43123092 (-)
G509952 NA other upstream 336093 43124581 ~ 43125387 (-)
G510310 NA other upstream 735226 43523714 ~ 43524108 (-)
G509563 NA non-coding upstream 16210 42784314 ~ 42784532 (-)
G509564 NA non-coding upstream 16625 42784729 ~ 42784965 (-)

Expression


Co-expression Network