LOC110526218 (LOC106587128)


Basic Information

Item Value
gene id LOC110526218
gene name LOC106587128
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57744132 ~ 57760940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607002.2
GCTCATATTCCCTTATCTGGGGGTCCGTTATCTACGTGTATATATGCCTGAGGACAAAGTATAAAAAAACAACCCTAACTACTGCTACTTCACTCATACTTTCTCGGAGCTCTGAGTCCTTTTGCTGCCATGTTTGTGTTCAAGTTCACTGTGGGTCTCCTGGCTCTGATGTTGGTGTCCTCTGCTTGGGCTGAGGAACTGACTGAGTCTAAAGAGAATGTTGCTGAGGAAGACACGTCGGCTGACCTCTCTGTTGGTGAGCTGCTGGTCAGAGCCAACAGGGATCTCACCCCCGAAGCCGATGAGCCTACTCTGATGGGAGACATTGCCATGCCCTCGGAGAAGAACGCTGACCCCTGCACCGCCCGCGGATGTCTGTGGCAAAAGTACAGTGACGGAAACATCTGGGTGCCCTACGTCATTGCCAACCACTTCTCATCTCGCGAAGTAGCCATCATCCTGCGAGGTCTTGACTCCTTCGCCGAAACCACCTGCATCCGCTTCTTCCAGCGCCAGAATGAGAGGGACTACCTCAGCATTGAGAATCGCAGCGGGTGCTACTCTTATGTTGGCCGTCGGGGTAATGCCCAGACTGTGTCCCTGGCCCGTCAGGGCTGCCTGTACCACAGCACCGTCCAGCATGAGCTCCTCCACGCCCTGGGTTTTAACCACGAGCAGACCCGCAGCGACCGTGACAACCACATCCGTGTCGTCTGGGAGAACATCATTGATGAGTATAAGTACGCATTCGAAAAGATTGCCACCCTGAACCAGGGAACTTCCTATGACTACAACTCTGTCATGCAGTACCACAGGTACGCCTTCTCCAAGAACAACCGCCCCACCATGGAGCCCATCCCCGACAGCAACGTGTCTTTCGGCGAGGCCACTCAGATGAGCAAGAACGACATCGACAGGCTGAACAGGCTGTATGGCTGCTAAACAGTTGGATACCTGTGGTCTCATGTCCGATGGACTCAAGATCATTCCGCTGAAGGAGTAAGAGTGACCTCTAGTGGTAGAACTGTTAGAATGTAATTTGCCTCAAAACATCAAGACTGCAACCTCTAATAAATCACAATAAACATCTGATCAACTGAAATCAAAAGCTTAA

Function

NR:

description
low choriolytic enzyme-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08076 E3.4.24.21; astacin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607002.2 True 1114 mRNA 0.52 10 57744132 57760940

Neighbor

gene id symbol gene type direction distance location
LOC110526219 LOC106587128 coding upstream 9197 57729444 ~ 57734935 (+)
LOC110526217 hce2 coding upstream 27854 57713161 ~ 57716278 (+)
psmc3 psmc3 coding upstream 84203 57649932 ~ 57659929 (+)
aplnr2 LOC106586995 coding upstream 97079 57644667 ~ 57647053 (+)
LOC110526214 LOC106587124 coding upstream 101645 57639437 ~ 57642487 (+)
LOC110526223 LOC106561972 coding downstream 82054 57842994 ~ 57863756 (+)
fgf3 LOC106587135 coding downstream 155405 57916345 ~ 57921070 (+)
LOC110526226 LOC106587136 coding downstream 167838 57928778 ~ 57936266 (+)
fgf19 LOC106586997 coding downstream 180300 57941240 ~ 57943684 (+)
LOC110526232 dhcr7 coding downstream 390900 58151840 ~ 58158582 (+)
G525908 NA non-coding upstream 45368 57698450 ~ 57698764 (+)
G525905 NA non-coding upstream 48644 57695268 ~ 57695488 (+)
G525903 NA non-coding upstream 49292 57694632 ~ 57694840 (+)
G525897 NA non-coding upstream 61936 57681988 ~ 57682196 (+)
G525655 NA non-coding upstream 149463 57594401 ~ 57594669 (+)
G525969 NA non-coding downstream 49800 57810740 ~ 57810945 (+)
G526375 NA non-coding downstream 69601 57830541 ~ 57830787 (+)
G526386 NA non-coding downstream 79571 57840511 ~ 57840853 (+)
G526395 NA non-coding downstream 90053 57850993 ~ 57851197 (+)
G526411 NA non-coding downstream 108560 57869500 ~ 57869702 (+)
G525912 NA other upstream 33792 57703458 ~ 57710340 (+)
fbxo3 fbxo3 other upstream 116513 57621795 ~ 57635241 (+)
G525861 LOC106587122 other upstream 137765 57604108 ~ 57606367 (+)
G525645 NA other upstream 163062 57576084 ~ 57581070 (+)
G525972 NA other downstream 56884 57817824 ~ 57818280 (+)
G526547 NA other downstream 349966 58110906 ~ 58112819 (+)
G526628 LOC106587143 other downstream 511139 58272079 ~ 58272836 (+)
LOC110526933 LOC106562045 other downstream 557980 58318920 ~ 58408967 (+)
G527450 NA other downstream 1017783 58778723 ~ 58779017 (+)

Expression


Co-expression Network