XLOC_023988 (CR759887.2)


Basic Information

Item Value
gene id XLOC_023988
gene name CR759887.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 16186344 ~ 16192102 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047619
CGATCGAGTAcagtgaacagtgatttaatgactTTAGCGACTTGTTTTGCATCTCAAACAGCAAATAATATGTCGACTGTGTTTTTTACTCGAGATAATTTGATCACGCCTGTATTTGTCAACAATAATCATCAGAGTGACACGATGGCTTCTCCTACACCTCGTAACACGACGAGAAGCCCAACAGAAAACCCAGAGAACGGGAGGAAAGGGAAAAGAGTCTCTGCTTTCTTTAAGAGAGTATGGAAGGCTGCAAAGCGCCCTTTCCTTAGCTCTGACCGGAGCAGAGTGGTTCCCTTTGAACCACAGTCAGATAACGACAATTTCGAGCACCTGCCTGTTCCAGGTCCCTCCAGGACCGTCGCAGCACATGCAGACCTTGAGCCGGTGTGGCTGCCAGGCCAGGTCTGTGAAGATCCTCAGCCgttgagtgttccgggcccctCCAAGATCAAGCAAACAGCAGATGTGCCGAATGCAGATCGGGCCCGTCCTGAGTCCTCAACGGCCCTCACAGGTCATGTTGACCCTGAGCAGATGCATCCGCCAGTCCAGGTCTGCGACAGTCTTGAGTCATCCTCAGCCGGGCCCCTCCAATATTAAGAAAATGACGGATGCAGATTCGGTCAGTCCTGAGTCGCCTCCGTCTGTTCAAGACCCCTCTAAAATTGATGGGACTGATGGTGAGTCATCCTGAATTTGGTTCATTTTATTTCTGCCAtctgttatttttactctttGCTTTTTTAGTTTATAAATCAGACAGTGTCATTTCTTGTACTGTTGGTGTGTATTAATTAATACACTGCAGCTCTGTTCATGgagatgtttctgtttgttttcttcattttagaaaaacccaagaaaggaaggaaagggaAAAGAGTCTCTGCTTTCTTTAAGAGAGTATGGAAGGCTGCGAAGTTCCCTTTCCTGCATTTTACGCCACAGCCTGAGCCAGAGTCAGAGCCAGACCCAGACCTTGAGTCAGTATTTCTGCCAGGCCAGGGTCCTGAGGAGGATTCTGGGCTCA
>TCONS_00049036
AATGCAGATCGGGCCCGTCCTGAGTCCTCAACGGCCCTCACAGGTCATGTTGACCCTGAGCAGATGCATCCGCCAGTCCAGTTTGAAGTCGGAGACATGATTGGAGAAGGAGCTTTTGGCCAGGTGTATGTGGCATCTCACAAACGCAGTAAAAGAGTAAAGGTTGCCCTGAAGTGTATGGTGAAGAGTCAACAGGACCGTTATCTGGACGTTGATGGTCATTCCACACCTGTGCTTGCGGAAGTGGCAATGATGCTTAGGTTGATGAATGCTCCGCGATGTCCAAACATCATCAGATTACACCACTGGCTTGAGATTGAGGACAACTTTGTTCTCATTCTGGAGTACGCAGAGTCATGCAAGACCTTGCTTCAGTACATCAAAGATACAGCGGACATTGAAGAAAACCAAGCACGCCAGTTAATGCGTCAGTTGATCCGAGCTGTAATGTTCTGCACTGAGCGTGGAGTTTTCCATGGTGATATACACACGGCGAACATCCTGGTGACTCTACCCCGATTAGAGCTCAAATTGATCGACTTTGGATGTGCTCAGCCAATTACCCAAAAGCCTTTCAACAAAAGAGCTGGACATGGCATGCCACCCGAGGCTTTGAGGTGTCGTGTATTCCATGCTTACCCGGCATACGTCTGGACAATAGGCATCATGCTGTATGAAATAATGCATGGACGACTGGCCTTTAATAACAGACAGTCAATAATGTTTGGCTGCATTGAGATACACCCCAGATTATCTACAGCATGCGTGGACCTGATTTCCCAGTGTTTGATTCGTAATCCAGCTAAACGGCTACAGTTACACCAGGTAGAAGAGCACTGCTGGTTCAAT
>TCONS_00047620
CTCAGTTTGAAGTCGGAGACATGATTGGAGAAGGAGCTTTTGGCCAGGTGTATGTGGCATCTCACAAACGCAGTAAAAGAGTAAAGGTTGCCCTGAAGTGTATGGTGAAGAGTCAACAGGACCGTTATCTGGACGTTGATGGTCATTCCACACCTGTGCTTGCGGAAGTGGCAATGATGCTTAGGTTGATGAATGCTCCGCGATGTCCAAACATCATCAGATTACACCACTGGCTTGAGATTGAGGACAACTTTGTTCTCATTCTGGAGTACGCAGAGTCATGCAAGACCTTGCTTCAGTACATCAAAGATACAGCGGACATTGAAGAAAACCAAGCACGCCAGTTAATGCGTCAGTTGATCCGAGCTGTAATGTTCTGCACTGAGCGTGGAGTTTTCCATGGTGATATACACACGGCGAACATCCTGGTGACTCTACCCCGATTAGAGCTCAAATTGATCGACTTTGGATGTGCTCAGCCAATTACCCAAAAGCCTTTCAACAAAAGTGACTATCGAGGAGCTGGACATGGCATGCCACCCGAGGCTTTGAGGTGTCGTGTATTCCATGCTTACCCGGCATACGTCTGGACAATAGGCATCATGCTGTATGAAATAATGCATGGACGACTGGCCTTTAATAACAGACAGTCAATAATGTTTGGCTGCATTGAGATACACCCCAGATTATCTACAGCATGCGTGGACCTGATTTCCCAGTGTTTGATTCGTAATCCAGCTAAACGGCTACAGTTACACCAGGTAGAAGAGCACTGCTGGTTCAATCCAACGACCCCAAATCCTGTGAAGCAGTTATACAATAGGAGAAAAAACTAAAGAAGCGAGGAGGAGAAGAGCACCATTTCCAGacatttcacaagactgttaaagttattaataactccctcatgtcattccaaacctctAAGACCTTACTTCTCTTCAGTGTCAGTTCATGACGTGTGTTGACGAGAGCTCTGtcctgcactgtatgtgtgtcgcactgctgacgtttacctcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttaaacatcagcagtgcgacacacatacagtgcagtACAGAACTTCTGTagtcattatttctgttttattatttcagaaaGTGAAAATATTTGAGATGAAAACTCTCTGATCCTCCATAAACCACAAAGATGAAGAAATGTTGAAATCACAGAAAACTTCATCAAACCATGAGAGCCCTGTCCTGCGCTGTATGTGTGTCGCGCTGCTGACGTTTACCTCGgatgtgcccacgctttgtttaaaagagaggaagtcgcgcaggcctctgggttaaacatcagcagtgcgacacacatacagtacactgtgCTCTTATGAACGTGTGGtttgagggtcagagagctctcagatttcatctaaaatgttcTCATTTGTGTTCTCAATATGAAGTAAACATGAATTTGAACTAAGGACATGAGGcgagtaattaatgacaataatggtAATTAATGGTGCCtagaccgcagctctgcacaagacgtttggccagaggagaaatggtcgtgcccaactgagcctggtttctctcgaggttttttccttcactttagtcaattggtgaagttttgttcctcgccactgtcgccgctggcttgcttggtttgggacttgtggagctgcgcatcgatggatttcctcttcagtgtttggactttcagcagtgacaattaaaccacactgaactgaactgaactgaacttcaactgtgaaatctggactgacacagtttcaatttacttctatgttaagctgctttgacagtccacattgtaaaagcgctatagaaatgaagatgaattgaactgaattaatgCTAAAACTCCATTAGGAAGTCCAGTGCTGTCACAGTTTTCTCCTCTAAAGTGTCATCAAAGATCTGCTTGACTATTTTCTACCTCATAAATGAATCTGGTGTTCTGTCAtaagagagagagattgttttataattaagtgttcataattgttttgtaatgaattgcttttatttattgtt

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-061207-69 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000070692 ENSDARG00000095238

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047619 False 1033 processed_transcript 0.48 4 16186344 16188838
TCONS_00049036 False 849 lncRNA 0.48 6 16187651 16190731
TCONS_00047620 True 2065 mRNA 0.43 6 16189044 16192102

Neighbor

gene id symbol gene type direction distance location
XLOC_023987 CR759887.4 coding upstream 483 16174902 ~ 16185861 (+)
XLOC_023986 far1 coding upstream 56666 16079913 ~ 16129678 (+)
XLOC_023985 NA coding upstream 110528 16066877 ~ 16075816 (+)
XLOC_023984 sb:cb470 coding upstream 140573 16043246 ~ 16045771 (+)
XLOC_023983 ppfibp2b coding upstream 143403 15933411 ~ 16042941 (+)
XLOC_023989 mical2b coding downstream 2348 16194450 ~ 16309747 (+)
XLOC_023990 parvaa coding downstream 120156 16312258 ~ 16345430 (+)
XLOC_023991 tead1a coding downstream 163981 16356083 ~ 16431599 (+)
XLOC_023992 CR376785.1 coding downstream 324052 16516154 ~ 16516562 (+)
XLOC_023993 atp6v1e1a coding downstream 409737 16601839 ~ 16613912 (+)
XLOC_023973 CR762411.1 misc upstream 968235 15217824 ~ 15218109 (+)
XLOC_023980 NA non-coding upstream 576349 15540766 ~ 15609995 (+)
XLOC_023979 BX323543.4 non-coding upstream 695677 15490212 ~ 15490667 (+)
XLOC_023978 BX323543.2 non-coding upstream 696700 15487494 ~ 15489644 (+)
XLOC_023997 BX004976.1 non-coding downstream 579689 16771791 ~ 16771908 (+)
XLOC_023998 NA non-coding downstream 637782 16829884 ~ 16836949 (+)
XLOC_024002 NA non-coding downstream 766070 16958172 ~ 16960501 (+)
XLOC_024007 NA non-coding downstream 1310894 17502996 ~ 17510419 (+)

Expression


Co-expression Network