XLOC_024165 (slc13a1)


Basic Information

Item Value
gene id XLOC_024165
gene name slc13a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 27923846 ~ 27932723 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047909
GTCTAATCTTAAAGCTTAATCTCCATGGCCATAAGGGTTTATGACATGCCCGGAACGGACCAGTAACAGGGGATGCGGATGGCACCAGGGCAAAGATTAATCAGCGGCGCATTATTTAAAGGCAATCATAAGACAAAGTCCCTGAGTTGACTCCGTTTCGGCCACAAGATGAGGCGGCTTAGATGTTCTTGGAGTGCCCTGAAACCTCTAATCATCATCAGCACACCGCTGGCGATTCTACCGCTGCCACTGGTCATCAAAACCAAGGAAGCAGAATGCGCATACGTCCTGATTTTAATGGCTGTGTACTGGATGACAGAGGTTTTGCCTCTGTCTGTGACGGCACTTATCCCCGCTCTGCTTTTTCCTCTTTTTGGGATCATGAAGTCCTCCCAGGTTGCATCTCAATATTTCAAAGACTTCCACTTGTTGCTTCTGGGGGTCATCTGTTTAGCGACATCTATTGAGAAATGGGGTCTTCATCGAAGAATTGCCCTCAGATTGGTGACCGGACTTGGAGTCAACCCTGGCATGTTGATGCTGGGGTTCATGGTTGGCTGTGCTTTTCTCTCTATGTGGTTGAGCAACACCTCAACTGTGGCAATGGTTATGCCAATTGTGGAGGCAGTGATCCAACAGGTTTTGAGTGCAAGTGAAGAGGCCAATAAAGACCACAAGGGGGCATTAAACGGCATCTCTAACCCAGCTCTTCAACTTGAAGATATCGAGGCCCAGCATGACCAGTCAGAGAAGATAAAAAGCATAGAAGCAGGCATAACAGAGCCAGAGCCAACCTCTGAGGAACATGAAACTGCTAAGGCACCGACTCCACCGTATAGTGGAAAGTACAGGACCCGCGAAGATCACATGATGTGTAAAGGCTTGTCACTTTGCATTGCCTATTCATCATCCATTGGGGGGCTGACCACATTATCCGGAACATCCACAAACCTCATATTTGCTGAATACATCTATCAGTACTACCCAGAATGCACCATCGTTAATTTTGGAAACTGGTTCGTGCTTTGTCTTCCCATCTGCATAATTATGCTGATTTTGTCATGGCTGTTCCTGCACTGGATGTACCTCGGATCCAACTTTCGTGCCAGTCTTTGCTCCAGACAGCgaactgaaaaagagaaaatcacTGCCAGAGTGCTCCGGGATCATTACAACTCACTGGGGCCCATAAGTTGGCAGGAGATTGTTACATTGATCATATTCATTCTGATGGCAATTTTGTGGTTTACAAGAAATCCAGGTTTCATGCCAGGCTGGTCGTCATTGTTCTCAGATAATCCAGGTTACGCTACGGATGCCACTGTAGCGCTGTTGCTGGGATTCCTGTTCTTCCTCCTCCCTTCACACAAACTAAACGCAGATCACTACGAGGCCTTGATAACGTGGAAGGACTTCCAGGCCTGTATGCCATGGGAGATCAGTCTGCTTGTTGGTGGAGGTTTTGCTTTGGCTGAAGGAACAAAGATTTCTGGTTTATCGTCTTGGGTCGCTGAATTGTTAACTCCCTTGGGAAGTCTTCCACCTTTAGCTACTGTCACCATTGCCTGCCTTATTGTCACATCTATCACAGAGGTTGCCAGCAATGCTGCCACAATGACAATCTTTTTGCCAATACTGGCACCCCTGGCCGAGGCAATCGGAGTCAACCCTCTGTACATGCTGATTCCCACGGCTTTGGCTGTGTCCTTCTCATTCCTGCTTCCGGTTTCTAATCCCCCTAATGCTATCGTCTTCACGTATGGTCATCTGACTAGCATGGATATGGTAAAAGCAGGGCTGGGTGTGAATGTTATAGGTATTCTTACAGTCCTTTTAGCTCTCACAACTTGGGGAACACCTCTGCTTAAGTTGGATACCTACCCAGACTGGGCACCGGTGGTAAACAGCACTGGAGTATGACCATAATTCTGAGCATTTTAGAAATGtgaacatttagtttttaaaatacacGGGATCCCAATTGCAGTTGACAGTACCTAATCCACAATCCATTAGTTTCATTCCTTTGGATCACTTGCACAagaagctaaaaccagcctaccTTATCCAATACAGCAGACTGAAAACTGGGTTTGCaacgtgtgtgtttatatgtttttgtattataataatatttgtgaTTATACagaatgtgttatataaaatgtatgttttaagcTTTAAGCTGAGTTTGCAAGACAGGGTTAGTCTTGTTGTCTAACCATAGCACTTAATGTTTATAAgattgtatatttttgttatcCTCTAGCAGGTACTTGTACATAGATATGTGAATAGTATGTGTggaatgttgaaaaaaattaacaaacagcTTAGATAAAATTCACCTCTCAGAATGCTATATATTTTAAATGGAAACTCAacatcattgtttattttacttgttcatattttttgtgagatatttctttgttttttatttcaaaatgacaagtctgtatttaaaaaacaaaacaaaaacaaaacatttaaatataaccaGAACCATTTATAGTTATCATGTGCTAGCAGGAATTCAcactcatttttaataaacaatgcTTCGGAAAA

Function

symbol description
slc13a1 Enables sodium:sulfate symporter activity. Acts upstream of or within sodium ion transport and sulfate transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; eye; and pleuroperitoneal region. Orthologous to human SLC13A1 (solute carrier family 13 member 1).

GO:

id name namespace
GO:0098656 anion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0008272 sulfate transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0015382 sodium molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031222-3 Enables sodium:sulfate symporter activity. Acts upstream of or within sodium ion transport and sulfate transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; eye; and pleuroperitoneal region. Orthologous to human SLC13A1 (solute carrier family 13 member 1).

Ensembl:

ensembl_id ENSDARG00000045638

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047909 True 2571 mRNA 0.43 15 27923846 27932723

Neighbor

gene id symbol gene type direction distance location
XLOC_024164 iqub coding upstream 11473 27873671 ~ 27912373 (+)
XLOC_024163 wasla coding upstream 111036 27744293 ~ 27812810 (+)
XLOC_024162 CR354392.1 coding upstream 306792 27616938 ~ 27617054 (+)
XLOC_024161 gpr37a coding upstream 423558 27493444 ~ 27500288 (+)
XLOC_024160 pot1 coding upstream 431842 27405738 ~ 27492004 (+)
XLOC_024166 cadps2 coding downstream 4862 27937585 ~ 28139577 (+)
XLOC_024167 BX322610.1 coding downstream 28557 27961280 ~ 27961394 (+)
XLOC_024168 cadps2 coding downstream 225629 28158352 ~ 28269953 (+)
XLOC_024169 fezf1 coding downstream 340185 28272908 ~ 28276091 (+)
XLOC_024170 aass coding downstream 346854 28279577 ~ 28336106 (+)
XLOC_023973 CR762411.1 misc upstream 12705737 15217824 ~ 15218109 (+)
XLOC_024159 CR933757.1 non-coding upstream 771099 27152633 ~ 27152747 (+)
XLOC_024158 CR762471.1 non-coding upstream 840402 27083330 ~ 27083444 (+)
XLOC_024156 NA non-coding upstream 1010572 26895253 ~ 26913274 (+)
XLOC_024152 CR391977.1 non-coding upstream 1139033 26781731 ~ 26784813 (+)
XLOC_024171 CR752641.1 non-coding downstream 368601 28301324 ~ 28301448 (+)
XLOC_024172 CR356235.1 non-coding downstream 571127 28503850 ~ 28503965 (+)
XLOC_024177 CR382363.1 non-coding downstream 880434 28813157 ~ 28815574 (+)
XLOC_024181 BX323444.2 non-coding downstream 1008859 28941582 ~ 28957144 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000330_04561065_04566268 SLC13A1 coding CI01000330 null 4560846 ~ 4566515 (+)