G485385


Basic Information

Item Value
gene id G485385
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 21948095 ~ 21950163 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU551665
TCTTTTGCAGCAGTTCAACTGTTGAAATCCAACAGAAACGTTTACGTTTTGAATAAATCACATTATATACAATTACATCATGTTACAGTGTTACTATCCAATCACATTTTACAGAATCACAGAATACTCCTTGTATATACCAGTGTAGCCTACCCAGCATCCCATACGGTTGAGTATACTGTACTTTGTACTGCGTGAGTAGAGATGCGTCCAGTGTAGGCTCCTACCATACTGTTCAGTGCTGAAATACAGGTCAGTCCAGTCTATCCCCTGTTGTAGATTAATCCAGGGTGTACCAGGATTGGGGTCAAATTAGTTTTTAAATTGACAATTGACTTTGTGAATTGAAAAATGCCCATAGAAAGCCATGGGCTAtgttcacttcctgaattgactttATTGAAAACTGAATTGAACACAACCCTGGCATGTATTCTGTGAAATCCAGCACTGGAACAGAGATGATGTCAGTGTATACACAGTCACATGTCTGTACAATATCATCCAGCCCTACAGGAATAAGAGGAGGAGGAGGCCCAACAGAGCTGGAACAGGCAGCatgctctgtctatctgtctgtcataCTGCTCTACAGCATTCCACAAAGACATCAATAACATCATCACAGTGAGTTTCCCTTTGAGACAGTACGTGGCTCCATCAAACATTTAGATACAATATTAAGGAGTAAAATGTTGGGTTTGTCAGCATTCCATCCATTCCGTTAGGAAGGCACATACAAACACCTCATTCATAAAGCAATTTAGAAGTCAATTCATAACAAATACTGATCTTGCAATTATTTGCCTTCAGTAGGGTCTGCATGATCTTCATATCTAGCTAATTTGATAGAAAAATATAGTGCCTTACTTTCAATCAGCTCAGTTACAGTGTAAATGTAGTACAGCATCCATAGTTACAGAGAGCGAAAACGTCCATTGATCACTTGGCTGGTTGAGTTAGTGGCACCGGTGAGCAAAGACTAAGAGACAGGAGTGTAGGTTTGGGTAAATGCAACCTGTCTAAAGACTGTGGCATCAGAGTTGAAGTTAGCTGATAACATTAACATGGTCTCAATCCACTTTCTAGGAGTTTTAGGAGCACCTCGTACATTTGCATAAGACAGTGACATGAACAAAAACACATAAAATATTTAGAAATAGATCATTATTTACATTGTTGGTGTAGCCTGTTAACTTACATAGTGCACATCCCGGGAAAAATACAATGTTTTACCATCAAAGTCGTCGTTCGTGTGAACTCACACATAATCAATGTGGGGTACAGAATGTTCACAGGTAGGTATTTTATAGAAAGACACTTTATgggtcatcactccagagaagggATTAGCTGAGGAGACTCAACACGACAGCATTTCTCGAGTCTTGGGAAGAAGACAGTCTCTATCCTGCCTTTCTCTGAGGCTCTGACAGATCACATCACTTCTTTCCATAGAGGGATGAGCTCTGGGTTtaaccacccccaccaccatgacccagcagcagcagtgtgGTGGGGCCACCACTATAAGGGCATATGTCCACACCACTGGTGGCCTTTCACCCCTTGGAAACCTCTTAATGAGTCTGACCAGTCCtcgcctgtctgtgtgtgtgtctgaaccaGATAGTGTAGGTGTATGAAGCCAAGCAAAGGAAGTGTGTTTCTGTTGTGTGTAGGACTCATATGAGCCTCTCCTCAGGGGGTACTTTGAGCACGCTGCCCATCTCCAGCCGTGCCCCTGCCACCTCCTGGGCACTGGGACTATAGGTGCCCTCTGACTGGCGCTTCTTGCGGGCGgtcagcaccatgaagaccagggCCACCACAGCCAACAGCACACACAGGCTGGCCAGAGGGATGGCCACCACTAGCCAGGGCACACGCTCCC

Function

NR:

description
PREDICTED: protein crumbs homolog 2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU551665 True 1894 lncRNA 0.44 3 21948095 21950163

Neighbor

gene id symbol gene type direction distance location
tubb2b tubb2b coding downstream 53287 21892070 ~ 21894808 (-)
LOC110525119 LOC106585327 coding downstream 168933 21775601 ~ 21779162 (-)
LOC110525478 LOC106585434 coding downstream 183972 21745476 ~ 21764123 (-)
LOC110525477 LOC106585431 coding downstream 207764 21738368 ~ 21740331 (-)
p2ry2 p2ry2 coding downstream 210490 21735689 ~ 21737605 (-)
nr5a1a LOC106585443 coding upstream 265652 22215815 ~ 22231402 (-)
nr6a1a LOC106585444 coding upstream 314460 22264623 ~ 22378999 (-)
LOC110525492 rpl35 coding upstream 488723 22438886 ~ 22441136 (-)
LOC110525493 LOC106585445 coding upstream 491081 22441244 ~ 22457748 (-)
LOC110525495 LOC102784428 coding upstream 510606 22460769 ~ 22464361 (-)
G485371 NA non-coding downstream 32554 21915322 ~ 21915541 (-)
G485359 NA non-coding downstream 51785 21896077 ~ 21896310 (-)
G485358 NA non-coding downstream 52225 21895652 ~ 21895870 (-)
G485351 NA non-coding downstream 64478 21883406 ~ 21883617 (-)
G485278 NA non-coding downstream 118343 21828677 ~ 21829752 (-)
G485395 NA non-coding upstream 15420 21965583 ~ 21967082 (-)
G485452 NA non-coding upstream 86447 22036610 ~ 22036846 (-)
G485453 NA non-coding upstream 87049 22037212 ~ 22037542 (-)
G485481 NA non-coding upstream 111811 22061974 ~ 22062201 (-)
G485494 NA non-coding upstream 126815 22076978 ~ 22084074 (-)
G485279 NA other downstream 113735 21833548 ~ 21834360 (-)
G484895 LOC106585423 other downstream 513376 21431930 ~ 21434719 (-)
G484807 LOC106585304 other downstream 649922 21296580 ~ 21298173 (-)
LOC110525458 LOC106585411 other downstream 827028 21115008 ~ 21121728 (-)
G484409 NA other downstream 939013 21007016 ~ 21009082 (-)
G485864 NA other upstream 310471 22260634 ~ 22263353 (-)
G485877 NA other upstream 330563 22280726 ~ 22281026 (-)
G486716 NA other upstream 887490 22837653 ~ 22840566 (-)
G486953 NA other upstream 1301123 23251286 ~ 23258106 (-)
G487022 bicdl1 other upstream 1435371 23385534 ~ 23385907 (-)

Expression


Co-expression Network