G485864


Basic Information

Item Value
gene id G485864
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22260634 ~ 22263353 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU552186
tgcatatttATGCATGATTTCTTTGAGTTTACCATCAGTAAACAAAGCCCGGGAACATTGAAGTGTTCCAGTCATGGTGGGGAGCAGCCAGCCACTGGTCTGGGGGGCTTAGTACACATGGCATGCCTAAACTCAGGGATCAGAACTTCTTAGGGGACACGTGTGTGAGACCCTAGCCCAGTGCTGCTGTCCCCATACAGTTTCACTATGGCCAACATACGTAAATATAGAGACTCTTAGTGGCAGATCATTCCTAGTAGTCGTTTTTTAAATCTAACGTCACATTGCTACCTACCTTACAGCCACCTCCACGACTGTTTGCCACTTTCATGTTTTGAAATACATGTATTACATTCTCATTTGTATTCTAATATTTTCTAGAATGTGTTTTCACCGATAATGGATATGTCATTTGCAATTTCTATACTGAAACTACCTCTTTTTTTGTGTCATCACGTATTTTACTTTCACACAGGTAATGCTTTAAAAAAATCATATTCATTGGTTTCAATAGCTGGTTCCCATCCAATTGGTACAGATTTTcttgcaaatattctaaaatccgcatAAAGAACATATGCGcatttcccaccagtggtgtttccaccaaacagacTTGCGGTAGTGCACAGAAAATGTACTTATTTGCTTCAATTTACATTTACCAAATAAAAATCTACATTTCAAAGTGTTTCTATCGCATTTTCAGCTCTAcggatagttttgtcacaaaaactgttgtgcTAAATGGCACACGTGACTATTCTGGTCGTGGAAcctgtgctctagccaacagctcgcacaTACAGTGCAGTTAGGCTGTGcggattatgagattattatggataagagcgagaatatttttatttgtcaaacggcgatcaagcatcgatcatcatgtcagaccctcaatatttattggaaaggagcgtaAAGCTCATCACCTTTAAtctgtagcctaataaactgcatgattTCCCGAGTCGTAGCGGGAGGACCATACACCATATCATTgtgtgactccaagttaactttcggtatgatggttattatatcaatatttgtgcataaatgcatttccaccaccatttcttgCATAATACATTTTGCTGACAcgaaaagatcccaccatgtcgaactaACAAATTATGTGTCGGCATTTATTAAATTGTACCGAAatgtcctgtttccatcacaacCGTATGACTTTACTCGCCTAAAACATTTGAATGGAAATGTGGTTATTGCACCAATGTTCTGTTATTTTGAGTCTCTTATTTTATCCAGTTACCTCTCACTGTTACTTATTGTGCATGTGAATGTTGCCTCATATGCTATTCCGTGCTACCTCAGGAAAAACTGTCGCCTAGGCCTTAGTGGGTGGGAGTTAGTTTGACCACCTTGCCACTTTACATTTACTCTAAccactttttaaaatatattttccaacaTCGATTATGTAATTAATGGCATCATACCTCACTGATCAATGAAAACTGATCTTATTTACCACCTTGTCATGATTACCATACCAAAGAATTTCGACAGGAATCTAAACTTGAATCAGTTTACTTTGTAGTGTCATATTAATAAGTATTGTATTCCAATCAATGTATTGTGTTCCTTCACTATATTGATATAGTTGTTTTGATGTACCAAACAATCTACTTGTGAAGTGTAAAGAGTAAAATGATCAGTATCATGTTTGATATTTATAACGCTGCTTGTGAGTGATTATCAATTAGAATGTAACTTTGGCCAAACTGCCATTTACTGTTGTTTACATGTTTTTCCTCACTCCTCTCAATAATAACTCTTGAATGAGTTTTGTGTTTTAAAAGTGTTTTAACAAGCTCGTTCAGTGTTATAACAATTCATTCACGGAGGCTCGTCAGCGAGCCCACAATGGGGAATGTCTAAGGCAACTAGAAGAGCAGATACAATCAGAATGTATCTCTGGGAACAACATCTTAATGTTTTTCCATTGAATGTGAAGATACCACTAGATATGCAGGTGAAACACATGACATTTGTATCTGccatgttttttgttgttatttttttatctttTGAAAAACCTTTCTCCTCGTCTTGTTACTTACTACCTGTGATGAATGT

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU552186 True 2118 TUCP 0.37 3 22260634 22263353

Neighbor

gene id symbol gene type direction distance location
nr5a1a LOC106585443 coding downstream 29232 22215815 ~ 22231402 (-)
tubb2b tubb2b coding downstream 365826 21892070 ~ 21894808 (-)
LOC110525119 LOC106585327 coding downstream 481472 21775601 ~ 21779162 (-)
LOC110525478 LOC106585434 coding downstream 496511 21745476 ~ 21764123 (-)
LOC110525477 LOC106585431 coding downstream 520303 21738368 ~ 21740331 (-)
nr6a1a LOC106585444 coding upstream 1270 22264623 ~ 22378999 (-)
LOC110525492 rpl35 coding upstream 175533 22438886 ~ 22441136 (-)
LOC110525493 LOC106585445 coding upstream 177891 22441244 ~ 22457748 (-)
LOC110525495 LOC102784428 coding upstream 197416 22460769 ~ 22464361 (-)
LOC110525498 shlb2 coding upstream 286861 22550214 ~ 22572561 (-)
G485700 NA non-coding downstream 11909 22248404 ~ 22248725 (-)
G485690 NA non-coding downstream 19233 22241199 ~ 22241401 (-)
G485651 NA non-coding downstream 65746 22194582 ~ 22194888 (-)
G485645 LOC106584485 non-coding downstream 72907 22187420 ~ 22187727 (-)
G485643 NA non-coding downstream 75569 22184833 ~ 22185065 (-)
G485868 NA non-coding upstream 87 22263440 ~ 22263661 (-)
G485875 NA non-coding upstream 15023 22278376 ~ 22278642 (-)
G485878 NA non-coding upstream 18317 22281670 ~ 22281894 (-)
G485883 NA non-coding upstream 26227 22289580 ~ 22289871 (-)
G485279 NA other downstream 426274 21833548 ~ 21834360 (-)
G484895 LOC106585423 other downstream 825915 21431930 ~ 21434719 (-)
G484807 LOC106585304 other downstream 962461 21296580 ~ 21298173 (-)
LOC110525458 LOC106585411 other downstream 1139567 21115008 ~ 21121728 (-)
G484409 NA other downstream 1251552 21007016 ~ 21009082 (-)
G485877 NA other upstream 17373 22280726 ~ 22281026 (-)
G486716 NA other upstream 574300 22837653 ~ 22840566 (-)
G486953 NA other upstream 987933 23251286 ~ 23258106 (-)
G487022 bicdl1 other upstream 1122181 23385534 ~ 23385907 (-)
G487016 NA other upstream 1126664 23390017 ~ 23392062 (-)

Expression


Co-expression Network