G485969


Basic Information

Item Value
gene id G485969
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22424226 ~ 22427128 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU552298
ctcacattgactctgtaccagtaccccctgtacatagcctcgctactgtcattttattgctgctctttaaatTTTTCTCATACTTTAGGtgagtaaatactttcttaattaacacttatttttcttaaaactgcattgttggttaagggcttgtatgtaagcatttcactttattcggcgcgtgtgacaaaAAATTATCATTGTTTAAATAGGTATTGATTTTTAATCCAAGGGTATCCTGCAATGGCGCTTGTTGAATTATGCAACATAATGTGACAACAACAGTAATTAATGAGGCAGTCTAGACCgcacaggtgagtgcaggtagggtagacagagcaagtGTTTGGGGGTTGCAGCCATGTTCAACCCCTTTGTGTTAATTCATTCGTATATGCAAATACACCCAGTATATTATGCAAATTAGGCACATATAATTTTCTATATTTTAACACAAAATATTTTGTTAAAATGCCTGACACAATGAGAACATGTATGTATGAGTGCATTCAAAAAAGAAAAGTGAATATGTTTTGCTTTTTTGCTTTGCAAAGGTATTAAAAACATATATCAATGCAATATCATAATAGAAACAATCCAACACTTATATATCATAGATTTAAACATGTATATGCATATACGTATAATCATACAACATGATCCTGTCACTGGAAGCAGTACTGTATACATTGTGGTCTACTATGTCTGGCTTTattttgtgtttgtgagagtggcAGTGGGCAGTAATCAGGCCTAATACCCGAAGGGTAAATGTTTGGCTAAGGTTTCTGTGATGATCATAACCAGCTGTGAGTTGGGCAGTAATCAGGCCTAATACCTGAAGGGTAAATGTTTGGCTAAGGTTTCTGTGATGATCATAACCAGCTGTGAGTTGGGCAGTAATCAGGCCTAATACCTGAAGGGTAAATGTTTGGCTAAGGTTTCTGTGATGATCATAACCAGCTGTGAGTTGAGTTTACAGAGCAGCCCCTCATTAGAGGATCACAGTGGAAGGAACTGGATTGTCACTTTGATTAGAGGTCTGGTGTCAATCTAACTAAATGGAAATATCTTAATGCAAGAGGTACAGTTTAACCTGGGAACAATTCATCCCCAAATCCCTTGAACTGCTCTCTCGTAACCCAACTTCTATCTCAATATATTATAATGAATATACAAGGCTTGTAATTCTGGAATGGATTCAGTAATGATATTTTGTTTTAGTGCATTGGGAAAAAATCTTTGTAACACAGAGCCTTTTAGCATTTCCACCACAACAACGTTTTCCAAACCATTCTTGCCTGCTCGCCCAAGACCTTGAGGGAATGTTTCTGTGGTGTTCTGATTGTCAGCACATTTTCTAATGGGTTTCTCTGAGTCTTTGTCCACACCTAGGGATTTACAGGGCTGACGATTAAATCCACTTTACTGTTGCCAAGGGCACAATGAGCTAAGTTGCAGGTGGGATTTGTTTGTGATTTGTTTGTGGTTGGATGAGGTGTCAATATTGTCATAGTAACAAATAATAAACATACTAACAAGTGTATATGATTCACAGACATCCTGGTTAATAGTCTATGAACAGTTTCTCAGTTGAGAGTAAAATAAGTCATTAATTCTCTGTGGAGCAAAAATAAACCATTGCATGTACTGTACACCTTCCTGTGCAGGGGAGAAAATATGTTGGAAGTTATAACCAACTATGTTTCTTTTTGGGTCCCATAAAGCTTGTTTACCTGACATGAACCTAAACTTGGGCTCTAGATATATCCCAGAACCCAGTTATATATTTGATCGCTTAGGACACTAAACGTTTTAAACCATTGATTCTTTAATAGTTTTCTCTATCATTCATACTTGGGCTTACTGTTCTGTTCTTTATTCGAGCAACAATGTCAGTAAAGAAACAGAAGTCACTGAATCCCAATAAATCCCCAATTATCTCATCTCAGTCTTTGGCCCCCTTGTACCAGTTCTTCCCTAGTTACCCATTCGAGTCACCCAGTCCCCGGTCCCCAAACCCATGGCCGTGCTATAATAAGAGATGGGACGTCTGAATGTGGAAATGAACCGTTGGACATAGGAGTAGTGTGCTCATGTCCCCGACACTGCCTGTCCTTGTCTGTAGGCCCATTAACTCCACAACATTTAGAAAGAGCTCTTGCCCCCCTCACTAGGCCCACTATGGGGGTTTCCTGGCCTTCCCCATGATGTCATCCTGATAGCTTAGGGCGTCTGGGTTGGGCCTTTTTATACTGTCAAATGGTTGGGGCCTCACTGTAGGGGGTACAGTGATGAACTGCACATGATCTTTACTGGGCCAGAACTGTAATACATCtgatccatctctccatctgtacTGATGAGGTGTTCCATTTCACCTAGAGCCAACCTTAACTGCTTCAGTTGGGAGAGACCTGTACTGTCGTTCACATCAGTTTACTATTACACCCAAAGAGACTGAAGTCTCTctgggttaggagaatgtatcaaCAGCACACAGCCCATGGGATCCTAGAAGGCCAGGTGGTGATGAGAGAGAGTTAAAGCATGGTTCATGTGGAGCAGGCTGAGCACATGTGAGATGAGGG
>TU552300
ctcacattgactctgtaccagtaccccctgtacatagcctcgctactgtcattttattgctgctctttaaatTTTTCTCATACTTTAGGtgagtaaatactttcttaattaacacttatttttcttaaaactgcattgttggttaagggcttgtatgtaagcatttcactttattcggcgcgtgtgacaaaAAATTATCATTGTTTAAATAGGTATTGATTTTTAATCCAAGGGTATCCTGCAATGGCGCTTGTTGAATTATGCAACATAATGTGACAACAACAGTAATTAATGAGGCAGTCTAGACCgcacaggtgagtgcaggtagggtagacagagcaagtGTTTGGGGGTTGCAGCCATGTTCAACCCCTTTGTGTTAATTCATTCGTATATGCAAATACACCCAGTATATTATGCAAATTAGGCACATATAATTTTCTATATTTTAACACAAAATATTTTGTTAAAATGCCTGACACAATGAGAACATGTATGTATGAGTGCATTCAAAAAAGAAAAGTGAATATGTTTTGCTTTTTTGCTTTGCAAAGGTATTAAAAACATATATCAATGCAATATCATAATAGAAACAATCCAACACTTATATATCATAGATTTAAACATGTATATGCATATACGTATAATCATACAACATGATCCTGTCACTGGAAGCAGTACTGTATACATTGTGGTCTACTATGTCTGGCTTTattttgtgtttgtgagagtggcAGTGGGCAGTAATCAGGCCTAATACCCGAAGGGTAAATGTTTGGCTAAGGTTTCTGTGATGATCATAACCAGCTGTGAGTTGGGCAGTAATCAGGCCTAATACCTGAAGGGTAAATGTTTGGCTAAGGTTTCTGTGATGATCATAACCAGCTGTGAGTTGGGCAGTAATCAGGCCTAATACCTGAAGGGTAAATGTTTGGCTAAGGTTTCTGTGATGATCATAACCAGCTGTGAGTTGAGTTTACAGAGCAGCCCCTCATTAGAGGATCACAGTGGAAGGAACTGGATTGTCACTTTGATTAGAGGTCTGGTGTCAATCTAACTAAATGGAAATATCTTAATGCAAGAGGTACAGTTTAACCTGGGAACAATTCATCCCCAAATCCCTTGAACTGCTCTCTCGTAACCCAACTTCTATCTCAATATATTATAATGAATATACAAGGCTTGTAATTCTGGAATGGATTCAGTAATGATATTTTGTTTTAGTGCATTGGGAAAAAATCTTTGTAACACAGAGCCTTTTAGCATTTCCACCACAACAACGTTTTCCAAACCATTCTTGCCTGCTCGCCCAAGACCTTGAGGGAATGTTTCTGTGGTGTTCTGATTGTCAGCACATTTTCTAATGGGTTTCTCTGAGTCTTTGTCCACACCTAGGGATTTACAGGGCTGACGATTAAATCCACTTTACTGTTGCCAAGGGCACAATGAGCTAAGTTGCAGGTGGGATTTGTTTGTGATTTGTTTGTGGTTGGATGAGGTGTCAATATTGTCATAGTAACAAATAATAAACATACTAACAAGTGTATATGATTCACAGACATCCTGGTTAATAGTCTATGAACAGTTTCTCAGTTGAGAGTAAAATAAGTCATTAATTCTCTGTGGAGCAAAAATAAACCATTGCATGTACTGTACACCTTCCTGTGCAGGGGAGAAAATATGTTGGAAGTTATAACCAACTATGTTTCTTTTTGGGTCCCATAAAGCTTGTTTACCTGACATGAACCTAAACTTGGGCTCTAGATATATCCCAGAACCCAGTTATATATTTGATCGCTTAGGACACTAAACGTTTTAAACCATTGATTCTTTAATAGTTTTCTCTATCATTCATACTTGGGCTTACTGTTCTGTTCTTTATTCGAGCAACAATGTCAGTAAAGAAACAGAAGTCACTGAATCCCAATAAATCCCCAATTATCTCATCTCAGTCTTTGGCCCCCTTGTACCAGTTCTTCCCTAGTTACCCATTCGAGTCACCCAGTCCCCGGTCCCCAAACCCATGGCCGTGCTATAATAAGAGATGGGACGTCTGAATGTGGAAATGAACCGTTGGACATAGGAGTAGTGTGCTCATGTCCCCGACACTGCCTGTCCTTGTCTGTAGGCCCATTAACTCCACAACATTTAGAAAGAGCTCTTGCCCCCCTCACTAGGCCCACTATGGGGGTTTCCTGGCCTTCCCCATGATGTCATCCTGATAGCTTAGGGCGTCTGGGTTGGGCCTTTTTATACTGTCAAATGGTTGGGGCCTCACTGTAGGGGGTACAGTGATGAACTGCACATGATCTTTACTGGGCCAGAACTGTAATACATCtgatccatctctccatctgtacTGATGAGGTGTTCCATTTCACCTAGAGCCAACCTTAACTGCTTCAGTTGGGAGAGACCTGTACTGTCGTTCACATCAGTTTACTATTACACCCAAAGAGACTGAAGTCTCTctgggttaggagaatgtatcaaCAGCACACAGCCCATGGGATCCTAGAAGGCCAGGTGGTGATGAGAGAGAGTTAAAGCATGGTTCATGTGGAGCAGGCTGAGCACATGTGAGATGAGGG

Function

NR:

description
PREDICTED: uncharacterized protein LOC105014231

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU552298 False 2591 lncRNA 0.40 4 22424226 22427128
TU552300 True 2591 lncRNA 0.40 2 22424226 22427128

Neighbor

gene id symbol gene type direction distance location
nr6a1a LOC106585444 coding downstream 45227 22264623 ~ 22378999 (-)
nr5a1a LOC106585443 coding downstream 192824 22215815 ~ 22231402 (-)
tubb2b tubb2b coding downstream 529418 21892070 ~ 21894808 (-)
LOC110525119 LOC106585327 coding downstream 645064 21775601 ~ 21779162 (-)
LOC110525478 LOC106585434 coding downstream 660103 21745476 ~ 21764123 (-)
LOC110525492 rpl35 coding upstream 11758 22438886 ~ 22441136 (-)
LOC110525493 LOC106585445 coding upstream 14116 22441244 ~ 22457748 (-)
LOC110525495 LOC102784428 coding upstream 33641 22460769 ~ 22464361 (-)
LOC110525498 shlb2 coding upstream 123086 22550214 ~ 22572561 (-)
LOC110525497 LOC106585448 coding upstream 145658 22572786 ~ 22579398 (-)
G485959 NA non-coding downstream 16960 22406935 ~ 22407266 (-)
G485935 NA non-coding downstream 63670 22360190 ~ 22360556 (-)
G485930 NA non-coding downstream 69637 22353136 ~ 22354589 (-)
G485929 NA non-coding downstream 72276 22351724 ~ 22351950 (-)
G485928 NA non-coding downstream 72734 22351137 ~ 22351492 (-)
G486024 NA non-coding upstream 87309 22514437 ~ 22514684 (-)
G486037 NA non-coding upstream 101357 22528485 ~ 22529833 (-)
G486573 NA non-coding upstream 113474 22540602 ~ 22540811 (-)
G486575 NA non-coding upstream 116235 22543363 ~ 22543636 (-)
G486586 NA non-coding upstream 152872 22580000 ~ 22580206 (-)
G485877 NA other downstream 143200 22280726 ~ 22281026 (-)
G485864 NA other downstream 160873 22260634 ~ 22263353 (-)
G485279 NA other downstream 589866 21833548 ~ 21834360 (-)
G484895 LOC106585423 other downstream 989507 21431930 ~ 21434719 (-)
G484807 LOC106585304 other downstream 1126053 21296580 ~ 21298173 (-)
G486716 NA other upstream 410525 22837653 ~ 22840566 (-)
G486953 NA other upstream 824158 23251286 ~ 23258106 (-)
G487022 bicdl1 other upstream 958406 23385534 ~ 23385907 (-)
G487016 NA other upstream 962889 23390017 ~ 23392062 (-)
LOC110525180 hps4 other upstream 1155908 23582127 ~ 23587892 (-)

Expression


Co-expression Network