G486643


Basic Information

Item Value
gene id G486643
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22667816 ~ 22668420 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU553088
agagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttctttacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcattgaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatat

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU553088 True 605 lncRNA 0.41 1 22667816 22668420

Neighbor

gene id symbol gene type direction distance location
LOC110525506 LOC106585454 coding downstream 21728 22642795 ~ 22646088 (-)
LOC110525501 LOC106585453 coding downstream 31425 22627955 ~ 22636391 (-)
LOC110525500 LOC106585450 coding downstream 50250 22593509 ~ 22617566 (-)
LOC110525497 LOC106585448 coding downstream 88418 22572786 ~ 22579398 (-)
LOC110525498 shlb2 coding downstream 95255 22550214 ~ 22572561 (-)
ptgesl LOC106585457 coding upstream 14165 22682585 ~ 22692496 (-)
derl3 derl2 coding upstream 58665 22727085 ~ 22730428 (-)
LOC110525508 LOC106585459 coding upstream 62087 22730507 ~ 22746609 (-)
LOC110525513 LOC106585307 coding upstream 90216 22758636 ~ 22759601 (-)
LOC110525517 LOC105014836 coding upstream 107579 22775999 ~ 22777465 (-)
G486642 NA non-coding downstream 764 22666771 ~ 22667052 (-)
G486623 NA non-coding downstream 30849 22636754 ~ 22636967 (-)
G486612 NA non-coding downstream 52439 22615099 ~ 22615377 (-)
G486594 NA non-coding downstream 79621 22587974 ~ 22588195 (-)
G486647 NA non-coding upstream 5793 22674213 ~ 22674454 (-)
G486651 NA non-coding upstream 11960 22680380 ~ 22688647 (-)
G486658 NA non-coding upstream 20535 22688955 ~ 22690157 (-)
G486679 LOC106585456 non-coding upstream 43987 22712407 ~ 22712833 (-)
G485877 NA other downstream 386790 22280726 ~ 22281026 (-)
G485864 NA other downstream 404463 22260634 ~ 22263353 (-)
G485279 NA other downstream 833456 21833548 ~ 21834360 (-)
G484895 LOC106585423 other downstream 1233097 21431930 ~ 21434719 (-)
G484807 LOC106585304 other downstream 1369643 21296580 ~ 21298173 (-)
G486716 NA other upstream 169233 22837653 ~ 22840566 (-)
G486953 NA other upstream 582866 23251286 ~ 23258106 (-)
G487022 bicdl1 other upstream 717114 23385534 ~ 23385907 (-)
G487016 NA other upstream 721597 23390017 ~ 23392062 (-)
LOC110525180 hps4 other upstream 914616 23582127 ~ 23587892 (-)

Expression


Co-expression Network