G486727


Basic Information

Item Value
gene id G486727
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22780003 ~ 22781555 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU553177
CAAAGTGCAATAACATCATCCATGATaccaaaatataaaaataaatgttgaaaGAGAATAATGAAGTCATTCTGTGTGTTGCCTCCACTTGATTGCTATTTTCAACAGAAAATATCTTATGATCTAATAATTCCTAACTCGGAAGGTAGTGTTGAGTCATATACTGAAGCAAAACCTGCAAGGCATCCATCTACCTCGTACCGAGTACTTCACACTTTCCACTGTGTCTCCATTCTCCCTTTTCCAAACTCAAAGAGCATGGAGATCGAGGCATGTAGTGCAACACTGAAAAAACGTcagacagtggaAACTATagctgattctctgtaataatctCCTTGATGTGAATGACACTGACATGGACTGTAATCATCGGTTCACACAACAAAAGCAAAGTCTGTACAAAGCAGCAGGCTGAGGTTGAACATGATGTCCTGATGACTGACACCTAGGCCTGCCAGGCAGATTTGGTTCCATAAACAGGAAATGGGTCAAGGTGTATTGCATTAAAGAAAATACATTTGTAACATGGGTTTGCTATTGTAATACAACACATCAGACTCTATGGACATGAATTACCTGAGTCTTTCAAAAACAATTTCTCCCTCTATTCCATGTTATTAGAaaatactaaataatacatgaaGTTCAACAAACAGTATCAAAATAACTATTAATAAAATAAGACCAGGCTAGTCTAAGGGGAGGAAAGCAGCAATACATGGCCCATCAGACTTGCATGACACCAGGTAAAACCAAAGAGAGCATCATGTTGCCATAAGCCCTTGTATGTGCATTGTTTTGTCCTCCTCTACAAGTCTAGAATCAACTTGAGTGTCATGTTATTTTTTCCACCCAGCATTAGAAATAGGATTTCAAGTCTTGCACTGCTCACTCTTCACACGTCAATTGGTAGAATCAACTAACTGAAGTAAAACTAAACAAAATGGGACACAGGAAAAATTCCTTTATTCTATTTCATCTATCTGCTTGTCCCCCAACCAACTTAAAAACCACACTTTATTTATGTCTTCAGTGATTATTCCTTTACACACTGACGACTAGCATGGGCTATGTGAAGTGAGGCTGGTGTGGTGACGTTGGAGTGATGTGTGTTCTGTGAGCAGTCAGTTAGCACTGGAGAGGACAGCCCGGGACCATCTACAACACTGGGCAAGAGCTGGAACCAGCAGTCCCAGTTCAGGGACCTGTAGACCCACTGATGTGTCATCATAGTGAGGATGGGGCACCATAGCGATGTGGAGACCATCTGCATCTTCATTGTCCCGAAGCCATCAGCTCTCCTTGAAGATGAACAGAATATCCTCATCTGTCCCGTAGCTCATTCGAGCCTCTTCAAAGTTACTAATGCT

Function

NR:

description
protein GUCD1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU553177 True 1373 lncRNA 0.41 2 22780003 22781555

Neighbor

gene id symbol gene type direction distance location
LOC110525517 LOC105014836 coding downstream 2538 22775999 ~ 22777465 (-)
LOC110525513 LOC106585307 coding downstream 20402 22758636 ~ 22759601 (-)
LOC110525508 LOC106585459 coding downstream 33394 22730507 ~ 22746609 (-)
derl3 derl2 coding downstream 49575 22727085 ~ 22730428 (-)
ptgesl LOC106585457 coding downstream 87507 22682585 ~ 22692496 (-)
LOC110525531 LOC106585477 coding upstream 10252 22791807 ~ 22793761 (-)
LOC118964915 LOC106585477 coding upstream 12479 22794034 ~ 22797348 (-)
LOC110525528 LOC106585464 coding upstream 60925 22842480 ~ 22848238 (-)
LOC110525523 LOC106585466 coding upstream 66975 22848530 ~ 22895023 (-)
LOC118965095 NA coding upstream 107540 22889095 ~ 22889286 (-)
G486692 NA non-coding downstream 38797 22740944 ~ 22741206 (-)
G486691 NA non-coding downstream 40309 22739495 ~ 22739694 (-)
G486679 LOC106585456 non-coding downstream 67170 22712407 ~ 22712833 (-)
G486658 NA non-coding downstream 89846 22688955 ~ 22690157 (-)
G486721 NA non-coding upstream 32698 22814253 ~ 22827725 (-)
G486817 NA non-coding upstream 205359 22986914 ~ 22988702 (-)
G486815 NA non-coding upstream 224579 23006134 ~ 23010715 (-)
G486949 NA non-coding upstream 431141 23212696 ~ 23214656 (-)
G486952 NA non-coding upstream 450562 23232117 ~ 23232587 (-)
G485877 NA other downstream 498977 22280726 ~ 22281026 (-)
G485864 NA other downstream 516650 22260634 ~ 22263353 (-)
G485279 NA other downstream 945643 21833548 ~ 21834360 (-)
G484895 LOC106585423 other downstream 1345284 21431930 ~ 21434719 (-)
G484807 LOC106585304 other downstream 1481830 21296580 ~ 21298173 (-)
G486716 NA other upstream 56098 22837653 ~ 22840566 (-)
G486953 NA other upstream 469731 23251286 ~ 23258106 (-)
G487022 bicdl1 other upstream 603979 23385534 ~ 23385907 (-)
G487016 NA other upstream 608462 23390017 ~ 23392062 (-)
LOC110525180 hps4 other upstream 801481 23582127 ~ 23587892 (-)

Expression


Co-expression Network