G486721


Basic Information

Item Value
gene id G486721
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22814253 ~ 22827725 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU553170
AGAGGCTCCTCCATGAGGGGAGCCTCTCTAGTTGCAGGCAAGCTCTGCAATGAGGTCTGGGACCTTGAAGATAAACACACAATCACCACAAATGTGACCAACTGCTATCTAATCTGGGTCATTAGTGAGCCTGATAACCAAATTAGAGCAATGATGGTTTACTTCTCATACCACCGTAGTTCTAGAAGCCTAAAGCCAACTGACACGATTTTTTGCCTGATTTTTATGTTTGTACGACATCAGAATATGATTAATTCTGAAAGGCTGATCTATTTATTCATAGATGACTTTATGGCTTACCCAGTTAAAAATGACTTTCACCTAGACCCACCCCCTCAGTGGCAACATTTCTGACCAGAACTTAAAACTACAAGGTGTGAAttccaagttaataatttatgATAAGTATGGGTCAGGTCTTGCAATTATTAAGTTGAAATATTGCTGTGAACATACCTCTTAGGCGAACAGCATGGTGATGAGGTTCTGCGAGTGGATTTTTGGCGGAACCCTGCactgccattcctcctcctctccttagtccagtagttcatctcactgatcagcagccttttctctctctcatccagactgcctaaggaatcctcagaccctgtcagagagcactgggattctggggaggttgccccactcctcaggttcacccccatgatacgagctagcgctggtaggagaatgcggagggctgtctgggtcacgactttaacaatcttcagacacagcatggagagctgctcgaatgtgagctatggccaacaaacagagtaatgtttttgtcaatcaagcaattccatgacaccattccctatataagggcacaacttttgaccagaaccttatgtgGAGAGACTTACGTTATTTTTCATGCCATGCTGAATCACCCTCCATTGGctagagaaaagaaaagaaaggaaacatATTTTACCTGCACACTGGTGTTGAGTTAGTGGAGTCACTAGATAGCCATGTCAGGGAAAATAAAAGTGTATTTAATTAAGCTATTAGCAAGTACATGAGACATTTTGTTCTTGATTTACAGGAAGAGTTAGGGGTGTGGTTACAGTGATGTTAGGTGTAGTGTCTAAAATCCCATTTGTGGTTAGAAGGTGCACTATGACTATAAATTCAGAGTTGTTGTATGTGAGGTTGGAAAAAGACATGGGACTTGCTCATCAGTTAGactcctcaggaaggagaggaggattgggGCACAGCATGTCCCAGTCTTGAGAGAAGGCATTAGAGTCCTCTgagcctccttctccagctgctcAATGATAGATCCCCTTTCCCGGAAACCACACCCGGGTGTCTGAGAAGACTCTGGGAAACCGCAAAGAGAAATCTAAAGTTGAATCTGAACTTGATCCCTCATTTCTTTCACCTTTAGTGATTTGATTGCACTGGACAGGTAAAAGCACATCTCTCTGCGTGCCTCCactatattgctttcacctatatAGATACTATCTTCTCAGATCAGTGCTGATGAATTTGAATACAACCTGCAACCAACATGAAGTAATCTCAGACCTGCACCAATGCTGCTGTCTTCCTCCACGGAAGTCTTCTTGGCGCGGCCACTGGACTTACGTTTAGCCTACATGACAACAGATTATAGGTCTCATAGCAGATCCAAGGTCAGTGTAGCGTCTCCTCCTAATGCTTTAAGGCTAGGATTTAGTGACAGTAAactaatcctagatctgtgcctaagtagGCAGAACATGTGTAGAGGACAGCATATTTCTTACCTtgcctcctgtcctgttcttGTTGGTCTCATGTGTCTCTGTTTCATCCTTCATATTCTCCACAACCTTATTTTGGTCATCCGGGGGATCCTCCCATTTCACGCTCTGGTGGATAAATGAGAGGTCAATATCAGTCCTAGGTTGTGACTTTGTGAAACAACTTATTCGCTAATATTTTAAACAAAACGGCAATAGTGGTCAGATTTCAGTCCATGGATCAAACCAGTGAGACATATTGCTTTGGTAGTGACCTACTATATTGTTAGTAATTTCTCCTCTAAACTCAAAATAGGCTAAATGAACCATACCTTGCTGTCATCTGACATGATGTGTAGGAAATACTAATACCTCCTTTAAAAATACGTCAGTGAACCATCGGCAGACAACTGAAGTGAATATGAATGTCCTTGAATTATGCCtaagcattgttgaatactcgattCCGATTGGCTGAAGCCAGAGCATTCTTCAAAGATGTCATACACACATGATGTCACAATTAGGCCTAAATCTAATGTCTATATGAACTGTCAATGTCATTAGAAAACAGATCATAGCTTGTCAGCAGGGCATTACATTATTTTCATCCATCCGTCAACACAAATGGCATGTCAACGTTCCCCAAATAATAAAGCCAAGTCGAGATGTATGGTTCTTCATCCAGAGGACGAAGCACCATTGTATCATCTAAAACCTTCAGAGAGATCCCTTAAAACTGTAGTATAAATTCTCCACATCTGTTCTGGTAGCTAGGTTAATTTAGCGAGACATGGCCAAATCCAACACATAGCGTTTCTACTGGGTCCTGCTTAGAGGTGACTGTCTGTCATGTTGCTAGTTGTAATGACGCTTTTAAAACAACAAAAGGTATTTGTAATTGCTCTGGGAGCGTAATTATTGCAGAGCCCAGCTACACATCCTGCTCGCTGGGCTCATTATGGACAGCCAATGAGCAGTTCAGGTGAAAAAGTCAGCCAGATCTGATCTCTATAACATACATGATACTAGGATCCTGTAGCAACCTGCCGGCCTGCACAATCCTCCATGGCACGAATGCTACACGCGCAATATATTATGCTAACATCCCACAACAATTCCCCAATTGGAATTACTTGCCTAAACTTCCAATCATACTTATTTTCTAATATCAACCATTGTTTCTGCACTTAAGGCAGACTTGCCATTAGAACAAGATGGAATTAGGACAACTGTAAAGCTCGTTAAACGTGGGCTAAAATTAACCTTACCTGGCTGTCGTCAGCCATTATGTGTAGCCCGTTAATTAAGGCTCTGCGCCTCTGATACTGCAGCtgttctgataggctactgtagcttTTCTGTAGCTGTTAAACTCGTCTAATCGTATCCGTTGAAAACCGGTCAGTGAACCGTCCTCAAACACAATGAACTGATGTCAATATGGACATTAACCTTCACATAAAgatatacatgacgtcagatatGCCTAGACGTATTGTTGACTTGATCAGAATACATATCATACATAGTACGTGCTGTTGACAGCCTACCCCGAAATCAAACAGGAACATGGattttgtgaaatctgttgtgaatgtatagGGATGTTTTTACAATTgcataactgccttcattttactggaccccatgaagagtagctgctgtagctaaaggggatccacaataaatacaaatacaaacccaATGCAACATGATAATACATGCATCAACTTGTTTTGACATATCACATGGGATATGACAGTAAACcaacagaccttgagaggagaTAAAACATCATCTGTTGATCTATTTCACAGGTTTCTGGTGCTTTCTAAGCATTCTACATGTGTTGGGGAAGGACAGTGGGATCTCTCCAGAGCATCTAATTACATCAATCATGTCTTGCCATGCATGTGATATGAGATAATGTTATGCACCACGTAAATATACATTGCCTAAGGCTGCAGTGCTATACTCCATGGAGACAGTGCTCAATGTTTATTTTACATGATGGATATATGCTACTTCATTTCatacaatcaatcatcaatcaatcagtacaatttatttataaagccctttttacatcagcagatgtcacaaaatgcttattctgacacccagcttaaaacctcaaatagcatgcaatgcagatttagaagcacggtggctaggaaaaacaggaacctaggaagaaacctagagaggaaccaggctagtcctcttctggctgtgccggtggagattataagcgTACATGGCCAATAAGGCCAGATCATTCTTCAAGCATTGTAGTTCAAACAttcttcatagatgaccagcagagtcaacaaaataatgtggttatagagggtgcaacaggtcagcacctccggagtaattatcagttggcttttcaaagccgaacattcagaggtcgagacagcaggtgtggtagagagagagagagagagagagagagagagaggtgggggagagagagagcgaagatcgAAACAGCAGGTCCATGAAAAGGTATCACGTCTGGAGAACACACATGCCTCTTCATGTGATACATGATGTTTGGCTGTGCTGTGCTAAGTGTTATCTTATGGGTTTGGTGATTGTTCTGTGTGAAGCCGTATTCTGCATTGCATCatggaatgtgatgtgaaatccCTGGGCCTATGGCTGTTGAAGCTACTCCACTGCACTGCTGCTCCACTGCActtcccttctcccccgattgctcagctctaggaagagtcttggtggttccaaacttcttccgtttaagaatgatggaggccactg

Function

NR:

description
uncharacterized protein LOC110518399

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU553170 True 4547 lncRNA 0.42 2 22814253 22827725

Neighbor

gene id symbol gene type direction distance location
LOC118964915 LOC106585477 coding downstream 16905 22794034 ~ 22797348 (-)
LOC110525531 LOC106585477 coding downstream 20492 22791807 ~ 22793761 (-)
LOC110525517 LOC105014836 coding downstream 36788 22775999 ~ 22777465 (-)
LOC110525513 LOC106585307 coding downstream 54652 22758636 ~ 22759601 (-)
LOC110525508 LOC106585459 coding downstream 67644 22730507 ~ 22746609 (-)
LOC110525528 LOC106585464 coding upstream 14755 22842480 ~ 22848238 (-)
LOC110525523 LOC106585466 coding upstream 20805 22848530 ~ 22895023 (-)
LOC118965095 NA coding upstream 61370 22889095 ~ 22889286 (-)
LOC110525519 LOC106585467 coding upstream 69537 22897262 ~ 22935152 (-)
anapc7 LOC106585471 coding upstream 164748 22992473 ~ 22998067 (-)
G486727 NA non-coding downstream 32698 22780003 ~ 22781555 (-)
G486692 NA non-coding downstream 73047 22740944 ~ 22741206 (-)
G486691 NA non-coding downstream 74559 22739495 ~ 22739694 (-)
G486679 LOC106585456 non-coding downstream 101420 22712407 ~ 22712833 (-)
G486817 NA non-coding upstream 159189 22986914 ~ 22988702 (-)
G486815 NA non-coding upstream 178409 23006134 ~ 23010715 (-)
G486949 NA non-coding upstream 384971 23212696 ~ 23214656 (-)
G486952 NA non-coding upstream 404392 23232117 ~ 23232587 (-)
G486953 NA non-coding upstream 427144 23251286 ~ 23258106 (-)
G485877 NA other downstream 533227 22280726 ~ 22281026 (-)
G485864 NA other downstream 550900 22260634 ~ 22263353 (-)
G485279 NA other downstream 979893 21833548 ~ 21834360 (-)
G484895 LOC106585423 other downstream 1379534 21431930 ~ 21434719 (-)
G484807 LOC106585304 other downstream 1516080 21296580 ~ 21298173 (-)
G486716 NA other upstream 9928 22837653 ~ 22840566 (-)
G487022 bicdl1 other upstream 557809 23385534 ~ 23385907 (-)
G487016 NA other upstream 562292 23390017 ~ 23392062 (-)
LOC110525180 hps4 other upstream 755311 23582127 ~ 23587892 (-)

Expression


Co-expression Network