G486815


Basic Information

Item Value
gene id G486815
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23006134 ~ 23010715 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU553277
ATTTTATTGAGCTCATGTCAAATACACATTGGATAAACAAAGTGGTAAAAACAACAAACGAGGGATAAGGTGAGATATCAGGATTACTTGGATAAACACCATTGAGATTATCTGAGTGTATTGCTTCAATGTTTTAAATGCACTGAGTCTCTTTTGTAAATACAGTGATTAACAGTCTGAGGTGGTCATGTTAGCAAAACTAGAGGAAAAAGGTAATTTATGAGTCATAAAGCCTACACAGTACCATACATTTTACATCATTTGTCACATACAATCATATGAATATCTGCATTTGTATGCAATCCCAGCATAGCTAATTTGTTAGCAAGTAAACCTGCAAACATGATTGTATGTCATTAGTTGTTAGTTTAAGTATTGGTCAAGGCTTTGacattgatgatgatgatttggTGTAGGTTTTATGGTGGTTCTAATGAAAAGAACACTATCAAAGCAAAGTAGGATTATCAAGCCTATGGCAAAGCCCCCCACCACAATTTAAACATTGATTGTTGTGCATAATCTTAAATCAACATGCACCATAATTGTCCATATTAATTCACAATAACACTTGATTCCAGATTACTTTGAATTTTCATTCCTTTTCACATATCAACGAGAACATGGAAAACATATAGCtgtctgggttttctgtgcatttgcaagatagaacagctgcctccgggtTAGAGAAGGTGTAGCTATTTGTCAATAATAGCTGGTACATGAGATCTAATATTAAtcaagtcttgaggttttgctcccctgaggtagagtatctcatgataagctgtagaccacactatttaccaagagaattttaatctatatttttcatagctgcctatttaccaccacaaaccgatgctggcactaagaccgcccTCAACGAGCTGTAttaggccataagcaaacaagaaaatgctcatccagtggTGGCGCTCCTTGTGGCCgcggactttaatgcagggaaacttaaatccgttttacctcatttctaccagcatatcaaatgtgcaaccagagggaaaaaaacctCTGGACCAACTTTATTCCTCACACAGAGACGCGCACAAAGCTCTGACTCGCCCTCcatttagcaaatctgaccagttccgggattcttccggtggcgtgaggagtacaccacatcagtcactggctaaatcaataaatgcatcgatgatgtcgttcCCACGGCGACCGTACGCACATACCCCAatcagaagtcatggattacaggcaacattcacactgagctaaaggctaccACATTCAAGgggcgggactctaacccggacacttgtaagaaatcccgctgtgccctccgacgaaccatcaaacaggcaaagtgtcaatacaggactaagatcgaatcgtactacaccggctccgatgctcgtcggatgtggcagggcttgcaaactactatggactacaaaagggaagcacagccgtgaaaCAAgcttaccagacaagctaaataactttTATGcacacttcgaggcaagcaacactgaagcatgcatgagagtaccagctgttccggatgactgtgtgatcacactcttcGTAGCCGATGTGCGTAAGACCATTAAACAGATcagcattcacaaggccgcagggtcagatggattaccaggacgtgtactgcgagcttgcgctgaccaactggtatctttactgacattttcaacctgtccctggccaggtatgtaataccaacatgtttcaagcagaccaccatagtccctgtgccgaagaacaccaagttaacctgcctaaatgacaaccgacccatagcactcacgtctgtagtcatgaagggctttgaaaggctggtcgtggctcacataaacaccattatcccagaaaccctagacccactcaaatttgcataccgccccaacagatcaaccaatcaaatgtatttataaagcccttcttacatcagctgatgtcacaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactcccagaTGACgcactattgcactccacactgctctttcccacctggacaaaaaggataacctatgtgagaatgctattcattgactaaagttcaacaccatagtgccctcaaagctcatcactacgcTAAGGACCCCGGCACTAAACACCtcttctgcaactggattctggacttcctgacaggcagcccctaggtggtaaggggaggtaacaacacatccgccacagtgatcctcaacacggtgcccctcaggggtgtgcgtgctcagtcccttcctgtactcccttttcacccatgactgcatggctaagcacgactccaacaccatcattaagttagccgacgacacaacattggtaggcctgatcaccgacaacgatgagacagcctatagggaggaggtgagagacctggcagtgtggtgccaggacaacaacctctccctcaacgtgatcaagacaaaggagatgatcgtggactacaggaaaagaaggaccgagcatgcccccattctcatcgacagggctgtagtggagcaggttgacacttccttggtgtccacatcaccaatgaactgtcatggtccaaacacaccaagacagtcgtgaagagggcacgacaatgcctattccccctcaggagacttcaaaaagttctacagctgcaccatcgagagcaacaccaccttgtatggcaactgctcgggccCCAACCACAAAGCGATATAGAGGGtcaaagcttcctgccacccaggacctctataccagacagtgtcaaaggaaggccctaaaaattgccaaagactccagccaccctagccatagactgttctctcgctACCGcagggcaagcggtaccggagcaccaagtctaggtccaaaaggcttcttaacagcttctacccacaagccataagactcttggaCAGCTAACCCCCccccatttttacactgctgctactctctgcttattatctatgcatagtcactttacctctacctacatgtatatattacctcaattaccttgactaacctgtgccccctcacattgactctgtaccagtaccccttgtatataacctcgctacttttattttattgttgctctttaattatttgttatttttatttattgtttacttcagtttattttagtaaatactttaacactttttcttaactgcattgttggttaagggtttgtaagtaagcatttcaggtctacacctgttgtatttggcgcatgtgacaaaatttgatttgatcaacaaACCAACAGCAAAATCCCATATAATAAGACATAACAACTCTAGATGCCTTCTGCATATTGTAAACTGTTTTAACGAATGGTGTAATTGCATGCCTCCCAGTGATGTACCACCTGGTTTCACCAAGAGTAAACAGATGGTATATGGCAGTTATTATCATGAGACTTTTGATAGTCCTTAGAGCAAAGCAAAACAGGTTGTCCACAAGAGGCTGCACCCATAACTAAAAATTAGACTGCCTTAGTTTGAGGCTTTTGTAATCATATCATCTGaatacacaaatcaaaatataaataTTGGGGTAATTGTGAATTGTACAAGATCTGATCAAATACACATGCACCAAGAAGCCAAATGTGCCACCCATCACCCAGAAACAACCTCAGAGGGTCAAGTTCTATGTCACTTACAGCTCCCATGTAACACTAGACTAAGAACAAATAAAACATCCATAAAACCTGGATTACACATTTGTTATGTGTAATCCTTTTAAATTGAGGTAAATTCAGATGCCAGCAAACCGGTATATCCACTGAATAATCATAGCTTAAGTCTTAACATAACTTTTTGGTTGGTTCGGAAAGTTTCATTAAAACGGAGTGAGTAGGACCTCAGAGACTTGACTGGGACATGATTGGTAGCAGACATTGTGATTATCTGGGTAAAGGACCCAGTCAACAAGCACACTCACAAACCCTCCAGGGAGAGAAAAACCACCACGAGAGAGTAGAACTAACATTAGGCAAGAGGGATCAAATGACTGTGGAACGACAAAAACATGTTTGACAAGGTTTTGCAGACAGGCCGACATTATGTAAAGGTGATTGTGAGGATGGGACACTTGGTGAGAACCTAATAACGAGAAGAACTTTCACGtcttttaaattcttcaagcacAACAAACAAATTGCATAAGAAACTTGATACGAAGTAGAAAAACTGTTAAGCAGCAGATAAAAAAGCATGTTAATTTACAGTAGTGACATCTTACATCattgcaaccctgtacatgtgactattaaacttGAAATCTAATCTATATTTTTCCAAAATAAATTCACTTAAATTCCAGTTAGGAAATGGAGGGACATTTTCACTGGTAGGTTTCTCAAATTCATTCCTCTTACGAAAAACAACAACCTCtcagaaaaaagaaagaaaaggtgTCTGACCAACCAAATCCCTTCAATGGCAAAAGAAGGGGTGCTGAAGCCTTTTGCTGAACGGACTATTTGCCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU553277 True 4553 lncRNA 0.43 2 23006134 23010715

Neighbor

gene id symbol gene type direction distance location
anapc7 LOC106585471 coding downstream 8067 22992473 ~ 22998067 (-)
LOC110525519 LOC106585467 coding downstream 70982 22897262 ~ 22935152 (-)
LOC110525523 LOC106585466 coding downstream 111111 22848530 ~ 22895023 (-)
LOC118965095 NA coding downstream 116848 22889095 ~ 22889286 (-)
LOC110525528 LOC106585464 coding downstream 157896 22842480 ~ 22848238 (-)
LOC110525530 LOC106585473 coding upstream 19047 23029762 ~ 23049799 (-)
LOC110525529 ppp1cc coding upstream 50316 23061031 ~ 23064135 (-)
LOC110525124 LOC106585475 coding upstream 212380 23223095 ~ 23315185 (-)
LOC110525535 LOC106585482 coding upstream 386309 23397024 ~ 23410695 (-)
LOC110525536 LOC106585483 coding upstream 400341 23411056 ~ 23446557 (-)
G486817 NA non-coding downstream 17432 22986914 ~ 22988702 (-)
G486721 NA non-coding downstream 178409 22814253 ~ 22827725 (-)
G486727 NA non-coding downstream 224579 22780003 ~ 22781555 (-)
G486692 NA non-coding downstream 264928 22740944 ~ 22741206 (-)
G486691 NA non-coding downstream 266440 22739495 ~ 22739694 (-)
G486949 NA non-coding upstream 201981 23212696 ~ 23214656 (-)
G486952 NA non-coding upstream 221402 23232117 ~ 23232587 (-)
G486953 NA non-coding upstream 244154 23251286 ~ 23258106 (-)
G487001 NA non-coding upstream 339978 23350693 ~ 23351167 (-)
G487005 NA non-coding upstream 344800 23355515 ~ 23355898 (-)
G486716 NA other downstream 165568 22837653 ~ 22840566 (-)
G485877 NA other downstream 725108 22280726 ~ 22281026 (-)
G485864 NA other downstream 742781 22260634 ~ 22263353 (-)
G485279 NA other downstream 1171774 21833548 ~ 21834360 (-)
G484895 LOC106585423 other downstream 1571415 21431930 ~ 21434719 (-)
G487022 bicdl1 other upstream 374819 23385534 ~ 23385907 (-)
G487016 NA other upstream 379302 23390017 ~ 23392062 (-)
LOC110525180 hps4 other upstream 572321 23582127 ~ 23587892 (-)
LOC110525552 LOC106585495 other upstream 703160 23713875 ~ 23717830 (-)

Expression


Co-expression Network