G486953


Basic Information

Item Value
gene id G486953
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23251286 ~ 23258106 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU553428
ctgttcactctgccaggatacactgtctctctaccccctgttcactctgccagaatacactgtctctgccagaatacactgtctctgccagaatacactgtctctctaccatgtgttcactctgccagaaaacactgtctctgccagaatacactgtctctgccagaatacactgtctctctaccatgtgttcactctgccagaatacactgtctctttccccctgttcactctgccagaatacaatgtctctctaccctgtgttcactctgccagaatacactgtctctctaccccctgttcactctgccagaatacactgtctctctaccccctgttcactctgccagaatacactgtctctctaccccctgttcactctgccagaatacactgtctctctgccccctgttcactcttCCAGAAtacactctctctaccccctgttcactctgctagagtacactgtctctctatcccctgttcactctgccagaatacactgtctctctaccccctgttcactctgccagaatacactgtctctctgccccctgttcactctgccagaatacactctctctaccccctgttcactctgccggAATACattgtctctctgccccctgttcactctgccaggatacactgtctctcta
>TU553426
tctgccaggatacactgtctctctgcaccatgttcactctgccagaatatactgtctctgccagaatacactgtctctgccagaatacactgtctctgccagaatacactgtctctctaccatgtgttcactctgccagaaaacactgtctctgccagaatacactgtctctgccagaatacactgtctctctaccatgtgttcactctgccagaatacactgtctctttccccctgttcactctgccagaatacaatgtctctctacccctgttcactctgccagaatacactttcTCTcgaccccctgttcactctgccagaatac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU553428 False 659 TUCP 0.50 3 23251286 23253361
TU553426 True 328 lncRNA 0.48 2 23254869 23258106

Neighbor

gene id symbol gene type direction distance location
LOC110525529 ppp1cc coding downstream 190734 23061031 ~ 23064135 (-)
LOC110525530 LOC106585473 coding downstream 205070 23029762 ~ 23049799 (-)
anapc7 LOC106585471 coding downstream 256802 22992473 ~ 22998067 (-)
LOC110525519 LOC106585467 coding downstream 319717 22897262 ~ 22935152 (-)
LOC118965095 NA coding downstream 365583 22889095 ~ 22889286 (-)
LOC110525535 LOC106585482 coding upstream 138918 23397024 ~ 23410695 (-)
LOC110525536 LOC106585483 coding upstream 152950 23411056 ~ 23446557 (-)
LOC110525537 pxn coding upstream 201434 23459540 ~ 23490066 (-)
LOC110525539 NA coding upstream 232428 23490534 ~ 23492812 (-)
LOC110525016 LOC106585485 coding upstream 236598 23494704 ~ 23497340 (-)
G486952 NA non-coding downstream 22282 23232117 ~ 23232587 (-)
G486949 NA non-coding downstream 40213 23212696 ~ 23214656 (-)
G486815 NA non-coding downstream 244154 23006134 ~ 23010715 (-)
G486817 NA non-coding downstream 266167 22986914 ~ 22988702 (-)
G486721 NA non-coding downstream 427144 22814253 ~ 22827725 (-)
G487001 NA non-coding upstream 92587 23350693 ~ 23351167 (-)
G487005 NA non-coding upstream 97409 23355515 ~ 23355898 (-)
G487008 bicdl1 non-coding upstream 101073 23359179 ~ 23360028 (-)
G487021 NA non-coding upstream 119925 23378031 ~ 23378339 (-)
G487023 NA non-coding upstream 128175 23386281 ~ 23386649 (-)
G486953 NA other downstream 1508 23251286 ~ 23258106 (-)
G486716 NA other downstream 414303 22837653 ~ 22840566 (-)
G485877 NA other downstream 973843 22280726 ~ 22281026 (-)
G485864 NA other downstream 991516 22260634 ~ 22263353 (-)
G485279 NA other downstream 1420509 21833548 ~ 21834360 (-)
G487022 bicdl1 other upstream 127428 23385534 ~ 23385907 (-)
G487016 NA other upstream 131911 23390017 ~ 23392062 (-)
LOC110525180 hps4 other upstream 324930 23582127 ~ 23587892 (-)
LOC110525552 LOC106585495 other upstream 455769 23713875 ~ 23717830 (-)
G488386 NA other upstream 1095427 24353533 ~ 24353823 (-)
LOC110525523 LOC106585466 coding downstream 356263 22848530 ~ 22895023 (-)
G484895 LOC106585423 other downstream 1816567 21431930 ~ 21434719 (-)

Expression


Co-expression Network