G487754


Basic Information

Item Value
gene id G487754
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24207065 ~ 24209281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU554377
tatgtggacactgcttcaaattagtggattctgctatttcagccacacccgttgctgacaggtgtataaaatcgagcacaaagcCAAAGGatctccatagagaaacattggcagtcgaatggccttactgaagagctcagtgactttcaatgtggcaccgtcataggatgccacctttccaacaagtcagtttgtcaaatttctagagctgccctggtcaactgtaagtgctgttattgtgaagtggaaacatctaggagcaacaacagctcgctcagccacacaagctcacagaactgtaCTGAGGAGTGCTGCAGCGCATAAAAATGGTCTtccctcggttgcaacactcactacagagttccaaactgcctctggaagcaacgttagaactgttcgtcgggagcttccttgaaatgtgtttccatggccaagcagccacacacgagcctaagatcaccatgcgcaataccaagcattggctggagtggtgtaaagctcgccgccattagactctggagcagtggaaacgcattctctggagggatgaatcacgcttcaccatctggcatgtCCGAGAAGACTAATctggttttggcggatgccaggagaatgctacctgtcccaatgcatagtgccaactgtaaagtttggtggaggaggaataatggtctggggctgtttttcatggttcgggctaggcccctcagTTCTTGTGAAGGGGAacattaacactacagcatacaatgacattgtagacgattctgtgcttccaactttgtagctaCATGttggggaaggccatttccagtttcagcatgacaatgcccccgtgcactaagcgagatccatacagaaagggtttgttgagattggtgtggcagaacttaactggcctgtataaagccctgacctcatccccatcgaacacctttgggatgaagcccaacatcagtgcccgacctcaccaatgctcttgtgggtgaatgttccaacatcaagtggaaagctttcccagaagagtggaggctgttatagcagcaaaggggggaccaactccaaataatgccaatgattttggaatgagatgtttgatatgtAAGTGTCCACATATGTTGTGTATTTGATATTTGCTGCGTGCACTGCCCAAATTGCGGGCACTTCCGACTGTAGCCTAGGCgatttaaaaacttttttttttaaagaagcgaATGATCCTCTATCGCCAAGTCATGCTTTTTGTTGTAGTAGACTGTTTTGAATGATTTAAGTATAGACAGGAGTAAGCTAATTAGGATATCATTTTGGCAATTCAATGTACTTTAGGGAAAGCTTCCCCTTATGTTTTTCATGTTGAATAAACACCAGTCattatgttttcatctgattgtcaatcAGTCACTCAACAAAGGCGCTCCTGTAGGCTACTCGCGGACATTCGTCCACTCACAAAATAATTTCAACATCCAAACCccaacagtgcactgtgcacccacaatttgatgaatggaaagagacatctgttacaaaccCCCTACGTGTATTGTAATAACATTCTACGATTGTCATTAGGCCTAGATTTGTGAAATGAATTGATTAATCAACTGCGAGCCTTGGGTTTCGGTCACTCAACTCCGCCTTGTCCACGAGCGTTTCTGCCACTCAGCTCCCCGCCTTGACAAAATGTAAGTGTTCTCCTCAAACCACAACGCAATTTAGCCAGGACGCTGTATGGGACAGATACCcccttactttcacccctggttACTACTACAGTTAATTAAGTTATCCATCCATACTTCATCTGGTCAGCAATATTGTCCAGTCATGTCAACAAGCTACTCTATATAAAAGTACATGCTTTAGAAGTTAACTAATACTCCCTGAATGTTTTTCATCTTATTGTGAAGTCATGTCAATATATGGACAAACAGGAAAGAATCACACAAATGAATTGGTAATTGGAAAGTTCTTTATGCGGTTTAAGAATTGGGTCAAATCGGgcggtgtacagtatgtgtaagcAAGAGTGAGGTGTGTATGTGTCATGTATGTGACACAAATGGCAATGTCATAGCTTTCACTAAGACATTGTAGACACGCAACTTTCTGATATCTGTAAATATGTCATGGATTTATTTATTGGTTGGTTGTTTTACTTTTAATATAGAAAAATGCATCAAAATAATGGCATTATATAATCACTTATTGTCATTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU554377 True 2217 lncRNA 0.43 1 24207065 24209281

Neighbor

gene id symbol gene type direction distance location
dtx1 LOC106585516 coding downstream 22696 24129400 ~ 24184369 (-)
LOC110525317 dgcr6 coding downstream 128017 24072614 ~ 24079048 (-)
LOC110525572 LOC106585514 coding downstream 135360 24059911 ~ 24071705 (-)
LOC110525567 LOC106585510 coding downstream 165145 24032069 ~ 24041920 (-)
LOC110525568 LOC106585513 coding downstream 175066 24024546 ~ 24031999 (-)
ccdc92 LOC106585518 coding upstream 1863 24211144 ~ 24224260 (-)
ncor2 LOC106585520 coding upstream 108631 24317912 ~ 24504123 (-)
LOC118965019 LOC106585477 coding upstream 348206 24557487 ~ 24566324 (-)
LOC118965071 LOC106585477 coding upstream 369424 24578705 ~ 24579373 (-)
ep400 LOC106579917 coding upstream 388689 24597970 ~ 24634358 (-)
G487807 NA non-coding downstream 1833 24204881 ~ 24205232 (-)
G487805 NA non-coding downstream 4814 24201922 ~ 24202251 (-)
G487801 NA non-coding downstream 8368 24198066 ~ 24198697 (-)
G487798 NA non-coding downstream 11990 24194762 ~ 24195075 (-)
G487795 NA non-coding downstream 15591 24191250 ~ 24191474 (-)
G487820 NA non-coding upstream 25521 24234802 ~ 24235048 (-)
G487821 NA non-coding upstream 25922 24235203 ~ 24235484 (-)
G487826 NA non-coding upstream 32573 24241854 ~ 24242060 (-)
G488329 LOC106585519 non-coding upstream 103010 24312291 ~ 24314486 (-)
LOC110525552 LOC106585495 other downstream 489282 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 621511 23582127 ~ 23587892 (-)
G487016 NA other downstream 815003 23390017 ~ 23392062 (-)
G487022 bicdl1 other downstream 821158 23385534 ~ 23385907 (-)
G486953 NA other downstream 953704 23251286 ~ 23258106 (-)
G488386 NA other upstream 144252 24353533 ~ 24353823 (-)
LOC110525585 LOC106585524 other upstream 451616 24655788 ~ 24715090 (-)
G489038 NA other upstream 896924 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 1287682 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 2070426 26271759 ~ 26283169 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G211130 NA non-coding NC_053132.1 CM020929.1 9926654 ~ 9984696 (+)