G488487


Basic Information

Item Value
gene id G488487
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24592542 ~ 24596060 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU555254
TCACTGCTAACATTTAAAAGACCAGTATTGTAATCTGGTCTGTTAACGGGAGCACATAAGAAGACAAAGGCCAATTTAATGCAATGAATGACGTTTAATAAATTGTCTTAAGTTACTTGGTCTTTAAGGACTGTTTGAAGGGCTTGAACAGGCCTTTGGAGATGGCAGAAAACATCATGACGAGAAGTGGACGTTTGTGAGGCGTCTCCTGTTGGGAGCTGGCGGGGAGATCCTTTGGCAGTGCAGACATGGCAGCATGTGGCACTATGCTGGGCactacagaagagagagagagttgacatgcACTTTAATCTAGAAATGATGTAATATATGTTACAACTCAACATAATTGACACTGATAAATGAGAACCAACAGCTTGAGTTTTGGAGAATATAATTACTTTTACATAAGAGATGACTACTGATTGCGTATATAACCTTTGTAAGGTTATTTTGAAATGGCATTTctttgtacaccaatatctcaaacagACAATGTCCTGTCGTGTgaaggtggcagggaagtcaggcgcaggagagtcaaacggagtgtaaaatggagtcttttaataaatgtccaagtaacatgctccataacactaaatagaAAAATTaatataaacaaatatgggtacgaaaacccgtcgcgcacctatacaaaaaacactacactgacaataaacaatctctgacaaagacatgaggggaaacagagggttaaatacacaacaggtaatgaatgggattgaaaacaggtgtgtgggaagacaagacaaaaccaatagaaaatgaaaaatggatcaatgatggctagaagaccggtgacgtcgaacgccgagcaccgcccgaacaaggagaggcaacgacttcggtagaagtcgtgacaggtcTGTACTTGTTCTGATTCAGAGCGGTGGGAATCCTTGTTCCCTTTCTTGAATAGCTAAGTATTTaaagagaaaaacatgttttaaaaaatgtcacagctgaacaacctcatgatgataacaatcacacctaccacaccagcacaacaacatTTATGATTGGTTTTGGAATGAACGGATGGTTTTATAATTTTTACACTGAATTGCATTGTTTACTCACATTATCTCCCACAACTGTTCATTTAAATATGTTTGCTGTACCTTTAAGTTGCTTGTCAGCCTGACCAGCCTTTGTAGAAAATATCATTTCCCGCTGCTACCCCTCACATCCTCAGCCAGTGGAAGAGCCTTAGGCCCGGTGGTTTTGACTGATGTTCTTGAGGCTGCCCTCAATGCCTCATTACATCTGTGGAGAAGCGCTTCACTCAAAGACTAGACAAGAATCCTATCAAATGAAgagtcctgagtcgacacggccTGTTGGAGGATTTTCTCCGAGCCAAACTCCCCCAACAGATTTTTATAGACGACTCTGTAGACTTTATGAATCCTCAAGTTCTCTGGATAGGCTCAtgtctcagagcagcctgaccatgcacagaagACCTCCATAACTTTGGTGATCAGGTCTTGTGACTTGCGTGTGACGTCAACTGGGTAATCTTCTGCTGGGGTTTGGATTTCTGTTAGAATTCTCACCactaacatgctgatgaggccgGTGAAGTCATCATCACTGCCCAAGTTATCAGAGGATGGGTTTGGAAGTGTGACATCTTTGACCATGTCTGGGCTGGTCCCTGACAATGTTTTGAGCTACACCAGAATGACTGGTGGTATCTACTTCCTCTCCATCAATGTTGGCCTTTAAGATTTGTGCTGCATTGGAGGTCTCGCTTGTTACCATAATGATGCCAGAAGGAGACATCCTCTACTTTCTGCATCAGAATTCACAGAGTACATGACCTGGCTTACCATAACTTTGGTAAAGAGACTGACTGTGTCACTAAAtactgatgaagaagaagagcaTGAAATGCTATCTTCAGACACTCTAGCCAACACCTTGGCCccctgagccaaactcattgaagTTGAATAGGGCACAAAACTAGGAAGCTCTGCCATTTGCGGAGAGTTGTGTGACCTCTTGCAGTATGGCCTCACTCTTACTGAGTAGAGGAGAGTTCTGACCATGAGTACAATCTGCTCTGGTCTCAAATGGTTTCTCTTCTACAGAGCCAGATGAATCATGTCC

Function

NR:

description
uncharacterized protein LOC110512141 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU555254 True 2145 lncRNA 0.43 2 24592542 24596060

Neighbor

gene id symbol gene type direction distance location
LOC118965071 LOC106585477 coding downstream 13169 24578705 ~ 24579373 (-)
LOC118965019 LOC106585477 coding downstream 26218 24557487 ~ 24566324 (-)
ncor2 LOC106585520 coding downstream 88419 24317912 ~ 24504123 (-)
ccdc92 LOC106585518 coding downstream 368282 24211144 ~ 24224260 (-)
dtx1 LOC106585516 coding downstream 408173 24129400 ~ 24184369 (-)
ep400 LOC106579917 coding upstream 1910 24597970 ~ 24634358 (-)
LOC110525585 LOC106585524 coding upstream 59728 24655788 ~ 24715090 (-)
piwil1 piwil1 coding upstream 277163 24873223 ~ 24885005 (-)
LOC110525589 LOC106585529 coding upstream 315567 24911627 ~ 24917852 (-)
LOC110525591 LOC106579906 coding upstream 576801 25172861 ~ 25375482 (-)
G488468 NA non-coding downstream 49647 24542366 ~ 24542895 (-)
G488463 NA non-coding downstream 50902 24540846 ~ 24541640 (-)
G488462 NA non-coding downstream 53117 24539224 ~ 24539425 (-)
G488454 NA non-coding downstream 70905 24521312 ~ 24521637 (-)
G488448 NA non-coding downstream 78632 24513624 ~ 24513910 (-)
G488505 NA non-coding upstream 44465 24640525 ~ 24640755 (-)
G488506 NA non-coding upstream 45898 24641958 ~ 24642184 (-)
G488507 NA non-coding upstream 46157 24642217 ~ 24642779 (-)
G488508 NA non-coding upstream 47649 24643709 ~ 24644217 (-)
G488533 NA non-coding upstream 79261 24675321 ~ 24675587 (-)
G488386 NA other downstream 238719 24353533 ~ 24353823 (-)
LOC110525552 LOC106585495 other downstream 874759 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 1006988 23582127 ~ 23587892 (-)
G487016 NA other downstream 1200480 23390017 ~ 23392062 (-)
G487022 bicdl1 other downstream 1206635 23385534 ~ 23385907 (-)
G489038 NA other upstream 510145 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 900903 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 1683647 26271759 ~ 26283169 (-)
tmem230b LOC106585554 other upstream 1859672 26455731 ~ 26457883 (-)

Expression


Co-expression Network