G488645


Basic Information

Item Value
gene id G488645
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24837596 ~ 24839086 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU555417
aaataaaggtgtacatttttattttttttatctgccaaatcggtgtccaaaaacacTGATTTCCGATtgctatgaaaacttgaaatcggccctaattaatcgtccattccgattaatcagtcaaCCTCTAGTAAGTAGTATAAACAACTCTCATAGTGACGAGCAGTAAGTGACATTAACAACAACTCTCACAGTGACGAGTAGTAAGTAGTATAAACAACAACTCTCACAGTGACAAGCAGTAAGTAGTATAAACAACAACTCTCACAGTGACGAGTAGTAAGTAGTATAAACAACAACTCTCACATTGACGAGCAATAACTAGTATTAACAACAACTTTCACAGTGACGAGCAGTAAGTAGTATTAACAACACACAGGGAAGAGCAATAACTAGCATTAACAACAACTTTCACAGTGACGAGCAGTAAGTAGTATTAACAACACACAGTGAAGAGCAGTAACTAGTATTAACAACACATAGTGAAGAGCAGTAAGTAGTATTAACAACAACTTTCACAGTGACGAGCAGTAAGTAGTATTAACAACAACTTTCACAGTGACGCGCAGTAAGTAGTATTAACAACAACACTCACAGTGACGAGCAATAAGTAGTATTAACAACAACACTCACAGTGACGAGCAGTAAGTAATATTAACAACAACTTTCACAGTGACGAGCAGTAAGTAGTATTAACAACAACACTCACAGTGACGAGCAGTAAGTAGTATTAACAACTCTCACATGGATGAGCAGTAAGTAGTATTAACAACACACAGTGAAGAGCAGTAAGTAGTATTAACAACACATAGTGAAGAGCAGTAAGTAGTATTAACAACAACTTTCACATGGATGAGCAGTAAGTAGTATTAACAACTCTCACAGTGACGAGCAGTAAGTAGTATTAACAACTCTCACAGTGACGAGTAGTAAGTAGTATAAACAACAACTCTCACAGTGACGAGTAGTAAGTAGTATAAACAACAACTCTCACAGTGACGAGCAGTAGGTAGTATTAACAACTCTCACAGTGACGAGTAGTAAGTAGTATAAACAACAACTCTCACAGTGACGAGTAGTAAGTAGTATAAACAACAACTCTCACAGTGACGAGCAGTAAGTAGTATAAACAACAACTCTCACAGTGACGAGCAGTAAGTAGTATAAACAACAACTCTCACAGTGACGAGCAGTAAGTAGTATTAACAACTCTCACAGTGACGAGCAGTAAGTAGTATTAACAACAACACTCACAGTGAAGAGCAGTAAGTAGTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU555417 True 1276 lncRNA 0.37 2 24837596 24839086

Neighbor

gene id symbol gene type direction distance location
LOC110525585 LOC106585524 coding downstream 122506 24655788 ~ 24715090 (-)
ep400 LOC106579917 coding downstream 203238 24597970 ~ 24634358 (-)
LOC118965071 LOC106585477 coding downstream 258223 24578705 ~ 24579373 (-)
LOC118965019 LOC106585477 coding downstream 271272 24557487 ~ 24566324 (-)
ncor2 LOC106585520 coding downstream 333473 24317912 ~ 24504123 (-)
piwil1 piwil1 coding upstream 34137 24873223 ~ 24885005 (-)
LOC110525589 LOC106585529 coding upstream 72541 24911627 ~ 24917852 (-)
LOC110525591 LOC106579906 coding upstream 333775 25172861 ~ 25375482 (-)
LOC110525597 NA coding upstream 609933 25449019 ~ 25451212 (-)
LOC110525601 LOC106585539 coding upstream 804146 25643232 ~ 25660249 (-)
G488620 NA non-coding downstream 33586 24803566 ~ 24804010 (-)
G488618 NA non-coding downstream 36885 24799516 ~ 24800711 (-)
G488574 NA non-coding downstream 49491 24744862 ~ 24788105 (-)
G488535 NA non-coding downstream 136838 24700369 ~ 24700758 (-)
G488646 NA non-coding upstream 913 24839999 ~ 24842967 (-)
G488693 NA non-coding upstream 68138 24907224 ~ 24907442 (-)
G488694 NA non-coding upstream 80047 24919133 ~ 24919436 (-)
G488697 NA non-coding upstream 82099 24921185 ~ 24921431 (-)
G488700 NA non-coding upstream 84593 24923679 ~ 24923888 (-)
G488386 NA other downstream 483773 24353533 ~ 24353823 (-)
LOC110525552 LOC106585495 other downstream 1119813 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 1252042 23582127 ~ 23587892 (-)
G487016 NA other downstream 1445534 23390017 ~ 23392062 (-)
G489038 NA other upstream 267119 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 657877 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 1440621 26271759 ~ 26283169 (-)
tmem230b LOC106585554 other upstream 1616646 26455731 ~ 26457883 (-)
LOC110525619 LOC106585557 other upstream 1708136 26481087 ~ 26551627 (-)

Expression


Co-expression Network