G488646


Basic Information

Item Value
gene id G488646
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24839999 ~ 24842967 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU555421
GCAGTAAGTAGTATTAACAACAACACTCACAGTGAAGAGCAGTAAGTAGTATTAACAACTCTCAGTGAAGAGCAGTAACTAGTATTAACAACACTCACAGTGAAGAGCAGTAAGTAGTATTAACAACAACACTCACAGTGAAGAGCAGTAAGTAGTATTAACAACAACACTCACAGTGAAGAGCAGTAAGTAGTATTAACAACTCTCAGTGAAGAGCAGTAACTAGTATTAACAACACTCACAGTGAAGAGCAGTAAGTAGTATTAACAACAACACTCACAGTAACGAGCATTAAGTAGTATAAACAACTGTCACAGTGAAGAGCAGTAAGTAGTATTAACAACTCTCACAGTGACAACCATTAAGTAGTATTAACAACTCTCACAGTGACGAGCATGAAGTAGTATTAACAACTCTCACAGTGACGAGCAGTAGGTAGTATTGACAACTCTAACAGTGACGAGCAGTAAGTAGTATTAACAACTCTAACAGTGACGAGCAGTAAGTAGTATTAACAACTCTAACAGTGACGAGCAGTAAGTAGTATTAACAACTCTCACAGTGATGAGCAGTAAGTAGTATTAACAACTCTCACAGTGACGAGCAGTAAGTAGTATAAACAACAACTCTAACAGTGACGAGCAGTAAGTAGTATTAACAACTCTCACAGTGACGAGCAGTAAGTAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU555421 True 688 lncRNA 0.38 2 24839999 24842967

Neighbor

gene id symbol gene type direction distance location
LOC110525585 LOC106585524 coding downstream 124909 24655788 ~ 24715090 (-)
ep400 LOC106579917 coding downstream 205641 24597970 ~ 24634358 (-)
LOC118965071 LOC106585477 coding downstream 260626 24578705 ~ 24579373 (-)
LOC118965019 LOC106585477 coding downstream 273675 24557487 ~ 24566324 (-)
ncor2 LOC106585520 coding downstream 335876 24317912 ~ 24504123 (-)
piwil1 piwil1 coding upstream 30256 24873223 ~ 24885005 (-)
LOC110525589 LOC106585529 coding upstream 68660 24911627 ~ 24917852 (-)
LOC110525591 LOC106579906 coding upstream 329894 25172861 ~ 25375482 (-)
LOC110525597 NA coding upstream 606052 25449019 ~ 25451212 (-)
LOC110525601 LOC106585539 coding upstream 800265 25643232 ~ 25660249 (-)
G488645 NA non-coding downstream 913 24837596 ~ 24839086 (-)
G488620 NA non-coding downstream 35989 24803566 ~ 24804010 (-)
G488618 NA non-coding downstream 39288 24799516 ~ 24800711 (-)
G488574 NA non-coding downstream 51894 24744862 ~ 24788105 (-)
G488693 NA non-coding upstream 64257 24907224 ~ 24907442 (-)
G488694 NA non-coding upstream 76166 24919133 ~ 24919436 (-)
G488697 NA non-coding upstream 78218 24921185 ~ 24921431 (-)
G488700 NA non-coding upstream 80712 24923679 ~ 24923888 (-)
G488709 NA non-coding upstream 93365 24936332 ~ 24936571 (-)
G488386 NA other downstream 486176 24353533 ~ 24353823 (-)
LOC110525552 LOC106585495 other downstream 1122216 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 1254445 23582127 ~ 23587892 (-)
G487016 NA other downstream 1447937 23390017 ~ 23392062 (-)
G489038 NA other upstream 263238 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 653996 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 1436740 26271759 ~ 26283169 (-)
tmem230b LOC106585554 other upstream 1612765 26455731 ~ 26457883 (-)
LOC110525619 LOC106585557 other upstream 1704255 26481087 ~ 26551627 (-)

Expression


Co-expression Network