G488810


Basic Information

Item Value
gene id G488810
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 25067214 ~ 25067753 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU555598
ccgcagagccaaactgagaaattgggggagaagggccttggtcagggaggtgaccaaaaacccgattgtcactctgacagagctccagagttcctctgtggagatggaagaaccttcaagaaggacagtcatctctgcagcactccaccaattaggcctttgtggtagagtagccagacggtagccactcatcagtaaaaggcacatgacagcccgactctcagagcatgagaaacaatattctctggtctgatgaaatgaagattgaactctttggcttaaatgccaagtgtcacgtgtggaggaaacctggcaccatccatacggtgaagcatggtggtagcagcatcatgctgtggggatgtttttcagtggcagggactgggagactagtcaggattgaggcaaagatgaacgtaggaaagtacagagagccttgatgaaaacctgctccagagcgctcaggacctcagactggggcgaaggttcaccttccaacaggacaatgacccgaagcacacagccaagacaacacaggag

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU555598 True 540 lncRNA 0.51 1 25067214 25067753

Neighbor

gene id symbol gene type direction distance location
LOC110525589 LOC106585529 coding downstream 149362 24911627 ~ 24917852 (-)
piwil1 piwil1 coding downstream 182209 24873223 ~ 24885005 (-)
LOC110525585 LOC106585524 coding downstream 352124 24655788 ~ 24715090 (-)
ep400 LOC106579917 coding downstream 432856 24597970 ~ 24634358 (-)
LOC118965071 LOC106585477 coding downstream 487841 24578705 ~ 24579373 (-)
LOC110525591 LOC106579906 coding upstream 105108 25172861 ~ 25375482 (-)
LOC110525597 NA coding upstream 381266 25449019 ~ 25451212 (-)
LOC110525601 LOC106585539 coding upstream 575479 25643232 ~ 25660249 (-)
lmx1bb LOC106585540 coding upstream 636421 25704174 ~ 25768796 (-)
pbx3b LOC106585542 coding upstream 911201 25978954 ~ 26067633 (-)
G488777 NA non-coding downstream 32035 25031671 ~ 25035179 (-)
G488751 NA non-coding downstream 76109 24990732 ~ 24991105 (-)
G488750 NA non-coding downstream 77678 24989233 ~ 24989536 (-)
G488749 NA non-coding downstream 78076 24988931 ~ 24989138 (-)
G488716 NA non-coding downstream 118496 24948485 ~ 24948718 (-)
G489019 NA non-coding upstream 10824 25078577 ~ 25078897 (-)
G489028 NA non-coding upstream 28225 25095978 ~ 25096263 (-)
G489029 NA non-coding upstream 28971 25096724 ~ 25097228 (-)
G489031 NA non-coding upstream 31308 25099061 ~ 25099275 (-)
G489034 NA non-coding upstream 34357 25102110 ~ 25102516 (-)
G488386 NA other downstream 713391 24353533 ~ 24353823 (-)
LOC110525552 LOC106585495 other downstream 1349431 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 1481660 23582127 ~ 23587892 (-)
G487016 NA other downstream 1675152 23390017 ~ 23392062 (-)
G489038 NA other upstream 38452 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 429210 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 1211954 26271759 ~ 26283169 (-)
tmem230b LOC106585554 other upstream 1387979 26455731 ~ 26457883 (-)
LOC110525619 LOC106585557 other upstream 1479469 26481087 ~ 26551627 (-)

Expression


Co-expression Network