G489328


Basic Information

Item Value
gene id G489328
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 25435443 ~ 25435959 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU556126
GAAACGGCAGCTAGTGACAATGCAGTGCTTCTGTCTGTTTTAACAGAGAAAATAGTCTCAGAGTGTACTAGTGGGGTTTTGGTGACACCTTGTGTATCACAAGGGATATAGATTCATAAGTGTGACAAAACACTATTCTCTTCAAGGCTGTTAAAAGACAATGGGAACGGTAAAGGTATACTAATTAATGTTGGATCTTTGAATTTCATAAATTATATCATTCAACAAAATACATTTCCCCAAGCAGATGCTCATTGCTCTAATGTAACTCTATAAACTTGTAAAACGCAAGCAGACCATTTCTATTCCCTGCAATGCAGTCTGCAAACTAATTTCGGTGTATTAGGGAAGAGGGAAGGTGCTGAAAGGGGAAAAAAGGAATGAGGCTGTAGGCCAGTAAAGATGCATACAATTGTCTCCACCCAGCAAGCGTGGTACATTTACATATGCAAATGCAAGGTTACTGTGAGGGTGGAACAACAAGCGGAGAGAGAGCGATGTAGGGGGAAGATCAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU556126 True 517 lncRNA 0.41 1 25435443 25435959

Neighbor

gene id symbol gene type direction distance location
LOC110525591 LOC106579906 coding downstream 59961 25172861 ~ 25375482 (-)
LOC110525589 LOC106585529 coding downstream 517591 24911627 ~ 24917852 (-)
piwil1 piwil1 coding downstream 550438 24873223 ~ 24885005 (-)
LOC110525585 LOC106585524 coding downstream 720353 24655788 ~ 24715090 (-)
ep400 LOC106579917 coding downstream 801085 24597970 ~ 24634358 (-)
LOC110525597 NA coding upstream 13060 25449019 ~ 25451212 (-)
LOC110525601 LOC106585539 coding upstream 207273 25643232 ~ 25660249 (-)
lmx1bb LOC106585540 coding upstream 268215 25704174 ~ 25768796 (-)
pbx3b LOC106585542 coding upstream 542995 25978954 ~ 26067633 (-)
LOC110525604 LOC106585543 coding upstream 798593 26234552 ~ 26264035 (-)
G489311 NA non-coding downstream 830 25433514 ~ 25434613 (-)
G489317 NA non-coding downstream 15661 25419528 ~ 25419782 (-)
G489316 NA non-coding downstream 17226 25418011 ~ 25418217 (-)
G489315 NA non-coding downstream 18236 25416890 ~ 25417207 (-)
G489307 NA non-coding downstream 28776 25406046 ~ 25406667 (-)
G489329 LOC106585340 non-coding upstream 1704 25437663 ~ 25437968 (-)
G489309 NA non-coding upstream 19138 25455097 ~ 25458118 (-)
G489332 NA non-coding upstream 24432 25460391 ~ 25460724 (-)
G489333 NA non-coding upstream 25417 25461376 ~ 25461681 (-)
G489038 NA other downstream 328873 25106205 ~ 25106570 (-)
G488386 NA other downstream 1081620 24353533 ~ 24353823 (-)
LOC110525552 LOC106585495 other downstream 1717660 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 1849889 23582127 ~ 23587892 (-)
G489511 hmcn2 other upstream 61004 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 843748 26271759 ~ 26283169 (-)
tmem230b LOC106585554 other upstream 1019773 26455731 ~ 26457883 (-)
LOC110525619 LOC106585557 other upstream 1111263 26481087 ~ 26551627 (-)
G491291 NA other upstream 1388908 26824867 ~ 26867158 (-)

Expression


Co-expression Network