G490513 (LOC106585548)


Basic Information

Item Value
gene id G490513
gene name LOC106585548
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26369257 ~ 26370378 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU557383
CTGTTGTCAAAGTAGAAGAGTCCCTTGGCGGGGTCTACCCGCAGGCAGGTGGCCACGTCCTCGTAGTTGGGCAGGGTGGCACTGAGACCCAGAAGACGCACGTCCTCCTGGGTCAGCTCCACGTTGCGGATGGTCCTGGCCACCAGAGACTCCAGGACTGGCCCACGGTCATCATGCAGCAGATGGATCTCATCAATGATGATGAGGCGCACTAGCTGGGTGTAGGTGCGCTCGCCTCCTTTACGTGTGATAATGTCCCATTTCTCTGGGGTGCAGACGATGACCTGGGTGGCATTGATCTCCTCTTTACACAGCTGGTGGTCTCCTGTCAGCTCAGACACTGTGATGCCATAACTGGCCAGACGCTTACTAAAGCTTCCCACCATCTCCTGTACCAGCGAGCGCATAGGAGCCACATAGATGATCTTGAAGTCATCCAAGTTGATGGTTCCGTCCAGGTTGATGTGCTTGCCGATCTCTCTTAGCATAGCCATGAGGGCCACGTTGGTCTTACCTGCTCCCGTAGGAGCACACACCAGCAGGTTCTCATCGGTCTCCATAGCAGTCTTGAACAGCTTGCTCTGAATGCGGTTCAGGGTTTTGAACCCTTCGAAACCTGCCTGGGCATACTTGGGCAGCTTCTCAATGGTCACCAGCAC

Function

NR:

description
hypothetical protein cypCar_00008141

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU557383 True 659 lncRNA 0.55 4 26369257 26370378

Neighbor

gene id symbol gene type direction distance location
LOC110525608 NA coding downstream 34424 26330079 ~ 26334833 (-)
LOC110525607 LOC106585546 coding downstream 51941 26293688 ~ 26317316 (-)
LOC110525606 LOC106585545 coding downstream 86089 26271759 ~ 26283169 (-)
LOC110525604 LOC106585543 coding downstream 105222 26234552 ~ 26264035 (-)
pbx3b LOC106585542 coding downstream 301624 25978954 ~ 26067633 (-)
LOC110525611 LOC106585549 coding upstream 12582 26382960 ~ 26391291 (-)
igsf9b LOC106585552 coding upstream 33808 26404186 ~ 26455420 (-)
tmem230b LOC106585554 coding upstream 85353 26455731 ~ 26457883 (-)
dpysl2a LOC106585556 coding upstream 132566 26502944 ~ 26530832 (-)
LOC110525619 LOC106585557 coding upstream 164650 26481087 ~ 26551627 (-)
G490511 NA non-coding downstream 3812 26365205 ~ 26365445 (-)
G490506 NA non-coding downstream 13385 26355414 ~ 26355872 (-)
G490431 NA non-coding downstream 144917 26223969 ~ 26224340 (-)
G490145 NA non-coding downstream 287521 26081305 ~ 26081736 (-)
G489983 NA non-coding downstream 400625 25968402 ~ 25968632 (-)
G490517 NA non-coding upstream 19402 26389780 ~ 26390145 (-)
G490616 NA non-coding upstream 95624 26466002 ~ 26466279 (-)
G490621 NA non-coding upstream 97143 26467521 ~ 26468331 (-)
G490886 NA non-coding upstream 173112 26543490 ~ 26544586 (-)
G489511 hmcn2 other downstream 871768 25496963 ~ 25497489 (-)
G489038 NA other downstream 1262687 25106205 ~ 25106570 (-)
LOC110525585 LOC106585524 other downstream 1659837 24655788 ~ 24715090 (-)
G488386 NA other downstream 2015434 24353533 ~ 24353823 (-)
G491291 NA other upstream 454489 26824867 ~ 26867158 (-)
G491539 NA other upstream 846229 27216607 ~ 27244193 (-)
LOC110525653 NA other upstream 1364618 27734995 ~ 27737024 (-)

Expression


Co-expression Network