G491417 (LOC106585572)


Basic Information

Item Value
gene id G491417
gene name LOC106585572
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 27039044 ~ 27039874 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU558441
TCAGTTCCTGCCAAAGTGGCACCCCGTAGGTTACAATTCTTCAGTTTAGCATTTTTTAGAGTGGCCACACGCAGATTAATTCCAGTCATCTGACTTCCCTCCATGTCAACACCTTTTAGATTGGCCTTTAAACCAGATGGGTCTTCAAAATTACATCCTTTGAGAGATGCCCCCTCAGCATTTGAACAGAGCATTTTTACACCCTGCAAGTTAGCACCATCGAGGTTGGCCCCAGAGAGGTCAGCCCGCTCCAGGTTTGAACAGCATAGGTTGGCATGTGTCAGGTTGCAGCGACTCAGGTTGGCCATCTTGAAGTTGATGTAGCGCAAGTCGAGGCGAGAGAGATCAGCACCACTGAAATTAAGTCCCTTTTGCATGGAGACAGGTATTATTTGTCATGGTCACATTTTAGGTACACTGCATCAAATGTTCAGCAGTGCGTTGTCCTTGTGGAAAATGTGGTTTTACCTGACAGCGGAGCTCTGATTTGGTGGGTGTAGCCAGCAGAAACCGAACAAACTCCTTGCGAGAGATGGGAGAGTGGTCCTCAGGTGGCTGGTTATTCTGGAGAAAAGCATGTGGTGACATGGATCAATATGCTGTGACAAAATTAAATT

Function

NR:

description
BTB/POZ domain-containing protein KCTD9 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU558441 True 617 lncRNA 0.47 3 27039044 27039874

Neighbor

gene id symbol gene type direction distance location
LOC110525629 LOC106585566 coding downstream 150739 26883863 ~ 26888305 (-)
LOC118965120 NA coding downstream 161590 26877322 ~ 26877454 (-)
LOC110525627 LOC106585561 coding downstream 163001 26828158 ~ 26876043 (-)
LOC110525624 LOC100380864 coding downstream 298401 26738279 ~ 26740643 (-)
LOC110525623 cenpe coding downstream 306100 26726252 ~ 26732944 (-)
LOC110525021 nkx31 coding upstream 211184 27251058 ~ 27252377 (-)
LOC110525638 LOC106585585 coding upstream 230947 27270821 ~ 27278551 (-)
LOC110525639 LOC106579858 coding upstream 303071 27342945 ~ 27351891 (-)
LOC110525643 LOC106585590 coding upstream 505734 27545608 ~ 27560556 (-)
LOC110525644 LOC106585592 coding upstream 521683 27561557 ~ 27578521 (-)
G491027 NA non-coding downstream 215887 26822893 ~ 26823157 (-)
G490982 NA non-coding downstream 220419 26755780 ~ 26818625 (-)
G490978 NA non-coding downstream 288481 26746242 ~ 26750563 (-)
G490963 NA non-coding downstream 309560 26707102 ~ 26729484 (-)
LOC110525621 LOC106585565 non-coding downstream 390529 26608848 ~ 26711398 (-)
G491475 LOC106585563 non-coding upstream 69500 27109374 ~ 27110138 (-)
G491435 LOC106585567 non-coding upstream 98282 27138156 ~ 27140754 (-)
G491492 NA non-coding upstream 105005 27144879 ~ 27145306 (-)
G491497 NA non-coding upstream 113832 27153706 ~ 27192358 (-)
G491598 NA non-coding upstream 277004 27316878 ~ 27317100 (-)
G491291 NA other downstream 171886 26824867 ~ 26867158 (-)
LOC110525619 LOC106585557 other downstream 487417 26481087 ~ 26551627 (-)
tmem230b LOC106585554 other downstream 581203 26455731 ~ 26457883 (-)
LOC110525606 LOC106585545 other downstream 755875 26271759 ~ 26283169 (-)
G489511 hmcn2 other downstream 1541555 25496963 ~ 25497489 (-)
G491539 NA other upstream 176733 27216607 ~ 27244193 (-)
LOC110525653 NA other upstream 695122 27734995 ~ 27737024 (-)
LOC110525655 LOC106585601 other upstream 787357 27827231 ~ 27885634 (-)
G494389 LOC106585296 other upstream 2371341 29411215 ~ 29415314 (-)
LOC110525681 hectd4 other upstream 2438781 29411204 ~ 29483533 (-)

Expression


Co-expression Network