G494672 (LOC106585272)


Basic Information

Item Value
gene id G494672
gene name LOC106585272
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29962791 ~ 29968300 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU562004
CTGTTCTTCATACTTACTTTATACACTGTACATGGAAACACAAAGAATGGGTAAAATAACTGTCTAAAACTTCAGAGTAATACAAAGTATgttgatactgtatatagccaagatATTGGGACATTTTTACAGCCAGGTAAGGTCATTTTGATGGGATCAAATTCAGTCAGCATTGCCATTTCAATAAGCGTGAGATGAAACATTTTTTAAGTGCAGAGTGGAGGCTTGATATGATACGGGTGCAAGTAGTTTTATTTGTAATATATTCCTATGTACATTTATACTATTTCCCTGTCGATACAACCAACCAGACATAAAAGTCATACCAACGTCTCATTGGTAAAAAATGGTCATTTTCAGTGACCATACAGCAAATTCTACTGGAGGATTATTCCAGAGGCATGAGTCAGAACAGGGAAACAGCAAATTTAAGGCAAAAAGGGAAATGTACTGTAAGGCCTGTGGTAATATCTGGATTTGCCAGTAGGATAACTATGGGGATTGTTTTTGTGTAGAGGTGTCTTGAGTTTAACTGATGATTGACACCTGGAGAATGTAAAGGTAGATCTGTGCAATGTCCAGTTGACTGATACAGTATCTCTGGAGCAGGATGATGCTTTAAAGAGCAGCCATGTAATAATTGTTAGAAGGGTGCATGTTTTCTTTTAGCTGGATGTGCTAAACTGTCTTATCCAATTTCACTGTCAGGATGCACAGAAGGACTCAGTGTTATCTACAGAGAAATCCATGTGGGTTGCCCTTAGAGTTATGTGCTACTTAAAGAAAAGGTAACCATATCATATGAACAGAGACTTGAAGCATAATGCAGTATCAGTTAAAACTGCATTCCTTTACCACACAAGCCCCTCCAGCTCAACTGACTGCATATTTACCATGCCTGTTGCATGTTTGTGTATTTGGGGCAATGCTTTCAGAGTCCCCCTGGAATGTGCCTATAGTCGGAAATTGAACAGGAATAGCATGATCTCATATATGTATGAGATTAATTGGTGGTTATCTAAGGATTCTAGAACATTGGGTTCACAATAGCCTCGTTCAAACCTTGTGCTAACATGCAAGTTTTATGATTTGATCAATATGATCCAATCACTATCTGATCAAGGTTTGTCGCTTCTAGATATTGTATTACAATGAGGGAGTTCTGTTAACCTGAGCTTCGGTGCACTGGTCTATGGCTCGTGAACGGGCAAAAGCGATGAGGGAGGAGCGCCCTTCTAAAAATTGAACAGTAATCTGCGCAGCTCGGCCATGTTTTCAACAAGGAAGCATGCTGTATCATCCAGAAACATACAGCTCTTTTTCCTAAAATATATGTTAAACTTTtcaaactagttttcattgggaaggcaaTCACATTCAcaaagcaatcacttttgcatgcaaaaacacagaatcctactcattacttcACGTGCCTTATCTAGCCTAGGCTACATCACTTCTGTTTTGAGCAGACTGCAAACTCCTCCCACTGGGGGTAAACCTGGCCAAATAATTGAATCCCATcaatggctgcatttacacaggcagccaaaGTGCCTCATCCTGCCACTGTGTTCGCATTGTGAACAGATTAGCAGGTGCCTCCCAGTATGCAAAATATTTGACTGCTATTCTttcaaaaatatttatttatttattttaagacaattaCTGATGCCATAAATCAACCGTGATACCTGTCAATAATTTGAGGCCGTTATTACGATGATTTGACCATCCAGATCTGTTTACCCTTGATTGATATTCAGACACAATGTGTGCTTAATTACCTACGGAGGTGATCAGGAAGGTCTGATGACAATCAGAATGTgaacaagatcaggacaaagtgTGAACGTTAGTGCCAGGTTGGCTGTGTTCGCACAGGCAGCCCACTTCTGATCTTTTTTACaatttggtcttttgaccaattagATCAGCTCTATTTCCCTTAATTGTCCAAAAGATCAGAATGAGTCTGCCTGTGTAAATACAGCAGTTTAAATAGGGCTATAGACAGTCTGGTGCCTCATTCATTCCCTACCAGAGCAATCTGTTTAGATTGAGACGACCCCACTTCACCATGATGGTCCTCCCTCCCCATATATCCCTCACACAGTCTTCCTTATTTTCCCAGGATCACATAAGCAATGTAATAACAGTTCAACCAAGATGCCATTTGTCGAAACAATTTTCTATGATCATGTTTATACCCGTATGTCTCAAATCACACGGCACCAAGACATTCTGTTTCTCTACTTCTGCATGTGCCTGCTTAACTGATTGTCGATGCATTGTGGAATTCTTTCTCTATGGTGGATCTGCTGCTGTGGCATGCGTGTGGGTAATATTGAACCTTTTCACTAACATTTCAATTCTCATTGGTCGATTACTGTTATAGTTCTACACAGGTTTGAAACAAGGTAGTACAAATCATTTGAATGATAAACTGACGGTCAATCATCTTAAATTATTAATCAACATTATTGAACAAATCTGAACTCTGTGTTCCTACTTTCCAAAGCATATTCTTTACATTATCTACAAACTGTTCATCGGAGGCTTCAACAAATGACTTCCAATTGAACCTAAATAGTATCGTCTATGTGCATAATCATTCAGTGCCTTATTTACAGCTTAGGAAGTGATTGTATTTCATATTTTCTAAATACATGGTActgtgctttcggaaagtattcagaccccttgactttttacacattgttacgttacagcctttttctcaAATTGATTCAATGGTTGTTTTcccgtcatcaatctacacacatattccgtaatgacaaaggaaaaacaggttgtgtgcaaataaaaaaaacaaatataaaatgtaaattttttacaagtattcagaccctttactcagtactttgttaaagcacctttggcagtgattacagcctcgagtcttcttgggtatggcactacacgcttggcacacctgtatttggggagtttctcccattcttctctgcagatcctctcaagctctgtcaggttggatggggagcatcgctgcacagctattttcaggtctctcctgttggaaggtgaaccttcacccgaatctgaggtcctgagcgctctggagcaggttttcatcaagaatctctctgtactttgctccgttcagctttctctcaatcctgactagtctcccagtccctgccgctgaaaaacatccccacagcatgatgctgccaccaccatgcttcaccgtagggatggtgccaggattcctccagatgtgacctttggcattcaggccaaagagttcaatattggtttcatcagaccagggaatcttgtttctcatggtctaagagtcctttaggtgccttttgtcaaactacAAACAGGCTGTCCTGTGCTTTTTACTGGCTTCCGTTgcactgtgggaacttatatatgtgcctttccaaatcatgtccaatcaattgaatttacaggtgggctccaatcaagttgtagaaacatctcaaggataagcaatggaaaaaggatgcacctgagctgacagcaaagggtctgaatacttatgtcctttacattttttacatttgcaaacatttctaaaaacctgttttcactttgtcattatggtgtgtgtagattgatccattttagattaacaaaatgtggcaaaagtcaaggggtctgaatagtttccgaatgcactgtaataatAGCAGATAATGCAAATCACAAGACTTGTATTAATGTATCAGTCAATCTGGTAGAAATACAATACTGTGCAAGGCAAATACCTCTGCTGTGTATTGGCTGCTGCGAATGATTGCTTGAGAAAACAACCTAGAAAATGAAACACTATGTAGTTAACAGAACTAAAACACTTAAGTTcacaaaaaaagtatatatacatttatatctatcaaaaaataattaaaaagtgTATCCTGATTGTGAATCTCCTCCGTGTGAAGAGGATACTAGATAATGGCCCCTTGGTAGACCTGACCCCAGCTCAACAAACAATATTATAGACAAGCCTTGATCATCTTCAACTATACAATCAATCATCCCAAACGAGGACCACAGAGCAGTTTCAGCCTGTCTCAAAGGACATCTTGGATTCAGCTTATCCCTTCACATATAGTATACAATTTCATACGGCCTACTTTGGCACATCACCTTACAGTAATACAAGTTTGCCCTGAAAGTGATATCTATAAATATACCTGTTGTGTAGGTAATGATTGCAGTGGCCTATAGCTAATGTAACATTCTGTATGATAGCACAGACAATAATTGGGTTCTCAACTGTAACCAAAGAGCAATTGGTACACAAACCTGGAAGTATTGCAGTATCTGAAGAAATGCCATGATTCTATATTGGCTGTATTTGTGTGGTTCTGGGAGACTGTAGACTGCCATGGTGCAAGGAGGATAAAACACACCTGTATAGCCCAGGGTGGAAGATGGGGAACATTGATCTATCAGGACTTAACCCAAACCTGCAGCATGGGGGCGCTGAATTACCAGAGAATGGAACCAGCTCCACTCTGAAGCCCCAGTCCAGGACACACACTATGTATTGGTATTACAGACATTGATAAATAAACACTAAAACAATATGCAACTTTTTCTTTAGCAACTTTTGCTATTGTTGGCCAATGGTTTGTGTGTTGTGCATGCATGTTCCTTGCTTAAATAAGATGCTTCTTAAAAGGCTTTTCTCCATTGTATCACTGTCTGAAGTAAAAAGAGCCTCTGACCGTATATTTTTGTTGATTCAGATGGTGTCGCTTTACAAAGACTGGTTCGTAGCACCTAAGGTTTTCAATGCTGTATTCTCTCATTCTACTTCCTGTCTATATATAGAGCCTTGAAAGCCTACTTTAAGCAATACTCCCATCTTGAAATTACTTGTCATCtcaatttattttattattttgcaGCCTTTCCCTCCTTTCTCATTTTCATCCTCTTCTCTAACTTTACACACTCTCCTTATCCTCCCTCTCTTATCTACCTCTCCAACCCTACTTTGGGTTGAAAATCCCAGGTTCCAGCTTTGTGCTGCCACTGCGGCCCCAGCAGCCTGCTGCCATGCTCATGCTGCGCTGGGCTGGTCCCGGGCCGtgctggctgtggctgtggctgtctgactggctctGTGTGCGCTCTGGTCTGCTGTGGCCGCTGCCGGTGGACGAGCTGGGGGCCGGCTGGGCGGAAATGGTGCGCAGCAGGTGGTTCCGCTTCCGCAGAAAGTCGCTTTTTGCACCCAGACCAAAGCTGCCTTTCCGTAGGACCATGCGGGCACTGCTGGTCTTTGGTGGCCGGGAGCGCTGGTTGTACTCCAGCTGAGAGAGGTGGGTCGCATAGCCCTCAG

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU562004 True 5377 lncRNA 0.41 2 29962791 29968300

Neighbor

gene id symbol gene type direction distance location
kmt5ab kmt5a coding downstream 92384 29863198 ~ 29870407 (-)
LOC118965073 NA coding downstream 151008 29798141 ~ 29811783 (-)
LOC110525697 rsrc2 coding downstream 175863 29769924 ~ 29786928 (-)
LOC110525696 LOC106585281 coding downstream 202419 29754902 ~ 29760372 (-)
LOC110525694 LOC106585282 coding downstream 208388 29706059 ~ 29754403 (-)
LOC118964857 NA coding upstream 1767 29970067 ~ 29974882 (-)
LOC110525703 LOC106585270 coding upstream 7858 29976158 ~ 29980778 (-)
LOC110525706 NA coding upstream 137065 30102891 ~ 30141156 (-)
LOC110525709 LOC106585264 coding upstream 221272 30189572 ~ 30191815 (-)
sftpbb LOC106585263 coding upstream 231294 30199594 ~ 30209590 (-)
G494703 NA non-coding downstream 1430 29960983 ~ 29961361 (-)
G494702 NA non-coding downstream 2065 29960144 ~ 29960726 (-)
G494701 NA non-coding downstream 2970 29959613 ~ 29959821 (-)
G494700 LOC106585272 non-coding downstream 3515 29958981 ~ 29959276 (-)
G494679 NA non-coding downstream 4587 29956552 ~ 29958204 (-)
G494671 NA non-coding upstream 6186 29974486 ~ 29980710 (-)
G494712 NA non-coding upstream 23587 29991887 ~ 29992155 (-)
G494787 NA non-coding upstream 195724 30164024 ~ 30164528 (-)
G494785 NA non-coding upstream 205530 30173830 ~ 30179693 (-)
G494542 NA other downstream 287218 29675323 ~ 29675573 (-)
LOC110525684 LOC106585295 other downstream 459400 29502192 ~ 29520980 (-)
LOC110525681 hectd4 other downstream 479445 29411204 ~ 29483533 (-)
G494389 LOC106585296 other downstream 547477 29411215 ~ 29415314 (-)
LOC110525655 LOC106585601 other downstream 2127489 27827231 ~ 27885634 (-)
LOC110525714 LOC106585251 other upstream 558386 30526034 ~ 30527686 (-)
G495554 NA other upstream 577102 30545402 ~ 30549450 (-)
G495560 NA other upstream 606818 30575118 ~ 30575573 (-)
G496772 NA other upstream 1693093 31661393 ~ 31661618 (-)
G496777 NA other upstream 1702678 31670978 ~ 31671927 (-)

Expression


Co-expression Network